Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004525.1

Orthogroup ID

OG0005759

Physical Location & Seq

Genomic Coordinates Forward (+)

51571 .. 52383

Gene Structure 813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgaacgacgagagcctccggcaggatttggacccccaaagcgatcagagctccgattacctcccacctcagccccaccaccctctcccttcccaaccccaaccccacccccagcctcgccgcccacgtggcttcgccgccacagccgcagccggctcggtgggccccgtctctccctcctccaccaaggggggaaggagagagagggagaaggagaaggagcggacgaagctccgagaacgcctccgccgatcaatcaccagccgcatgctcgccggactccgccagtacggcaatttccccctgcctgcgcgcgcagacatgaacgatgtgctcgcagctctggcgcgtgaggccggctgggtcgtcgaggttgacggcaccacttatcgccagtctccacctcaaattggaggagcgtattcgatgagcttgaggtcagtggagactccagtgtcaggtgttaaagcagccttggagtgtcatccatcatcagtagttagaattgatgagagtttgtctccggcttcgcttgattctgttgtgattggggagaagaatgagaagttttcgaatagtagtcctgccatgaactctgtaaattgcttggagactgatcagctcatgcagcacattccttctgccgcagggtttgcacctgccccatacgtccctctctatgtgacacttgcagtgagtggtttttaccccccaagcttagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

BES1_N Glyco_hydro_14

Protein Analysis

241

Amino Acids

26.13

Weight (kDa)

7.81

Isoelectric Point (pI)

75.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BES1_N	PF05687	64 - 203	3.2e-45	BES1/BZR1 plant transcription factor, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45300 AT5G45300 AT5G45300
fragaria_vesca	FvH4_5g24520 FvH4_5g24520 FvH4_5g24520 FvH4_5g24520 FvH4_5g24520
malus_domestica	MD06G1012600.v1.1
prunus_persica	Prupe.5G013400_v2.0.a1 Prupe.5G013400_v2.0.a1 Prupe.5G013400_v2.0.a1 Prupe.5G013400_v2.0.a1 Prupe.5G013400_v2.0.a1
pyrus_communis	pycom06g01050
rosa_chinensis	RchiOBHm_Chr7g0215001
rosa_laevigata	RLG00000002702
rosa_multiflora	Rmu_co8013204.1_g000001 Rmu_sc0004525.1_g000013 Rmu_ssc0000134.1_g000045
rosa_roxburghii	Rroxscaffold_3G00244800
rosa_rugosa	Rorug07G0149100
rosa_samantha	Rh7AG286200 Rh7BG277900 Rh7CG305300 Rh7CG305400 Rh7DG289500
rosa_wichuraiana	Rw7G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	667
AasI	GACNNNNNNGTC	1 cut(s)	454
Acc36I	ACCTGC	1 cut(s)	667
AccB1I	GGYRCC	1 cut(s)	380
AccBSI	CCGCTC	1 cut(s)	223
AccII	CGCG	3 cut(s)	313, 315, 349
AciI	CCGC	8 cut(s)	121, 138, 147, 223, 247, 265, 283, 645
AcvI	CACGTG	1 cut(s)	128
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	4 cut(s)	22, 189, 410, 458
AluBI	AGCT	6 cut(s)	51, 232, 341, 432, 622, 717
AluI	AGCT	6 cut(s)	51, 232, 341, 432, 622, 717
Alw21I	GWGCWC	2 cut(s)	53, 336
Alw26I	GTCTC	5 cut(s)	175, 402, 440, 525, 605
AoxI	GGCC	2 cut(s)	163, 354
ApaI	GGGCCC	1 cut(s)	167
ApeKI	GCWGC	4 cut(s)	149, 338, 470, 628
AspLEI	GCGC	4 cut(s)	313, 315, 317, 349
AspS9I	GGNCC	3 cut(s)	31, 163, 164
AsuHPI	GGTGA	1 cut(s)	250
AsuII	TTCGAA	1 cut(s)	572
AvaII	GGWCC	1 cut(s)	31
BaeGI	GKGCMC	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	380
BanII	GRGCYC	2 cut(s)	53, 167
BbrPI	CACGTG	1 cut(s)	128
Bbv12I	GWGCWC	2 cut(s)	53, 336
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	4 cut(s)	161, 350, 482, 640
BccI	CCATC	1 cut(s)	496
BceAI	ACGGC	2 cut(s)	307, 394
BcgI	CGANNNNNNTGC	2 cut(s)	138, 172
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	5 cut(s)	175, 402, 440, 525, 605
BfuAI	ACCTGC	1 cut(s)	667
BglI	GCCNNNNNGGC	2 cut(s)	129, 291
BisI	GCNGC	9 cut(s)	121, 138, 147, 150, 265, 339, 471, 629, 645
BlsI	GCNGC	9 cut(s)	122, 139, 148, 151, 266, 340, 472, 630, 646
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	3 cut(s)	31, 163, 164
BmiI	GGNNCC	4 cut(s)	33, 165, 166, 382
BplI	GAGNNNNNCTC	4 cut(s)	228, 260, 505, 537
BpmI	CTGGAG	1 cut(s)	435
Bpu10I	CCTNAGC	1 cut(s)	69
Bpu14I	TTCGAA	1 cut(s)	572
BpuEI	CTTGAG	1 cut(s)	454
BsaAI	YACGTR	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	186, 474
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 189, 410, 458
Bse118I	RCCGGY	2 cut(s)	152, 356
Bse1I	ACTGG	3 cut(s)	286, 394, 452
BseDI	CCNNGG	2 cut(s)	186, 474
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	4 cut(s)	22, 189, 410, 458
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	3 cut(s)	286, 394, 452
BsePI	GCGCGC	2 cut(s)	311, 313
BseRI	GAGGAG	2 cut(s)	169, 429
BseSI	GKGCMC	1 cut(s)	167
BseXI	GCAGC	4 cut(s)	161, 350, 482, 640
BseYI	CCCAGC	2 cut(s)	111, 360
Bsh1236I	CGCG	3 cut(s)	313, 315, 349
BshFI	GGCC	2 cut(s)	165, 356
BshNI	GGYRCC	1 cut(s)	380
BsiHKAI	GWGCWC	2 cut(s)	53, 336
BsiSI	CCGG	5 cut(s)	19, 153, 276, 357, 524
BslFI	GGGAC	1 cut(s)	656
BslI	CCNNNNNNNGG	4 cut(s)	22, 189, 410, 458
BsmAI	GTCTC	5 cut(s)	175, 402, 440, 525, 605
BsmBI	CGTCTC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	656
BsnI	GGCC	2 cut(s)	165, 356
Bsp119I	TTCGAA	1 cut(s)	572
Bsp120I	GGGCCC	1 cut(s)	163
Bsp1286I	GDGCHC	3 cut(s)	53, 167, 336
Bsp143I	GATC	3 cut(s)	43, 251, 616
BspACI	CCGC	8 cut(s)	121, 138, 147, 223, 247, 265, 283, 645
BspANI	GGCC	2 cut(s)	165, 356
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	3 cut(s)	313, 315, 349
BspLI	GGNNCC	4 cut(s)	33, 165, 166, 382
BspMI	ACCTGC	1 cut(s)	667
BspT104I	TTCGAA	1 cut(s)	572
BspT107I	GGYRCC	1 cut(s)	380
BsrBI	CCGCTC	1 cut(s)	223
BsrFI	RCCGGY	2 cut(s)	152, 356
BsrI	ACTGG	3 cut(s)	286, 394, 452
BssAI	RCCGGY	2 cut(s)	152, 356
BssECI	CCNNGG	2 cut(s)	186, 474
BssHII	GCGCGC	2 cut(s)	311, 313
BssMI	GATC	3 cut(s)	43, 251, 616
BssT1I	CCWWGG	2 cut(s)	186, 474
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstBAI	YACGTR	1 cut(s)	128
BstBI	TTCGAA	1 cut(s)	572
BstC8I	GCNNGC	8 cut(s)	154, 269, 273, 309, 313, 315, 336, 358
BstDEI	CTNAG	2 cut(s)	69, 718
BstENI	CCTNNNNNAGG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	484
BstFNI	CGCG	3 cut(s)	313, 315, 349
BstHHI	GCGC	4 cut(s)	313, 315, 317, 349
BstKTI	GATC	3 cut(s)	46, 254, 619
BstMAI	GTCTC	5 cut(s)	175, 402, 440, 525, 605
BstMBI	GATC	3 cut(s)	43, 251, 616
BstNSI	RCATGY	1 cut(s)	271
BstSLI	GKGCMC	1 cut(s)	167
BstUI	CGCG	3 cut(s)	313, 315, 349
BstV1I	GCAGC	4 cut(s)	161, 350, 482, 640
BsuRI	GGCC	2 cut(s)	165, 356
BtsCI	GGATG	1 cut(s)	484
BtsI	GCAGTG	1 cut(s)	699
BtsIMutI	CAGTG	3 cut(s)	447, 459, 699
BveI	ACCTGC	1 cut(s)	667
Cac8I	GCNNGC	8 cut(s)	154, 269, 273, 309, 313, 315, 336, 358
CfoI	GCGC	4 cut(s)	313, 315, 317, 349
Cfr10I	RCCGGY	2 cut(s)	152, 356
Cfr13I	GGNCC	3 cut(s)	31, 163, 164
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	4 cut(s)	268, 322, 589, 625
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	2 cut(s)	69, 718
DpnI	GATC	3 cut(s)	45, 253, 618
DpnII	GATC	3 cut(s)	43, 251, 616
DrdI	GACNNNNNNGTC	1 cut(s)	454
DseDI	GACNNNNNNGTC	1 cut(s)	454
EciI	GGCGGA	2 cut(s)	236, 272
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	2 cut(s)	186, 474
Eco24I	GRGCYC	2 cut(s)	53, 167
Eco47I	GGWCC	1 cut(s)	31
Eco53kI	GAGCTC	1 cut(s)	51
Eco72I	CACGTG	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	164
EcoT14I	CCWWGG	2 cut(s)	186, 474
EcoT38I	GRGCYC	2 cut(s)	53, 167
ErhI	CCWWGG	2 cut(s)	186, 474
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	4 cut(s)	271, 325, 592, 628
FaiI	YATR	6 cut(s)	269, 323, 590, 626, 667, 681
FaqI	GGGAC	1 cut(s)	656
FatI	CATG	4 cut(s)	267, 321, 588, 624
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	9 cut(s)	121, 138, 147, 150, 265, 339, 471, 629, 645
FokI	GGATG	1 cut(s)	471
FriOI	GRGCYC	2 cut(s)	53, 167
Fsp4HI	GCNGC	9 cut(s)	121, 138, 147, 150, 265, 339, 471, 629, 645
GlaI	GCGC	4 cut(s)	312, 314, 316, 348
GluI	GCNGC	9 cut(s)	121, 138, 147, 150, 265, 339, 471, 629, 645
GsaI	CCCAGC	2 cut(s)	115, 364
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	2 cut(s)	165, 356
HapII	CCGG	5 cut(s)	19, 153, 276, 357, 524
HhaI	GCGC	4 cut(s)	313, 315, 317, 349
Hin1II	CATG	4 cut(s)	271, 325, 592, 628
Hin6I	GCGC	4 cut(s)	311, 313, 315, 347
HinP1I	GCGC	4 cut(s)	311, 313, 315, 347
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HindIII	AAGCTT	1 cut(s)	715
HinfI	GANTC	3 cut(s)	279, 448, 536
HpaII	CCGG	5 cut(s)	19, 153, 276, 357, 524
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	3 cut(s)	48, 55, 236
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	2 cut(s)	11, 371
HpyAV	CCTTC	5 cut(s)	99, 189, 205, 211, 648
HpyCH4IV	ACGT	2 cut(s)	127, 669
HpyCH4V	TGCA	3 cut(s)	628, 656, 692
HpyF3I	CTNAG	2 cut(s)	69, 718
HpySE526I	ACGT	2 cut(s)	127, 669
Hsp92II	CATG	4 cut(s)	271, 325, 592, 628
HspAI	GCGC	4 cut(s)	311, 313, 315, 347
KroI	GCCGGC	2 cut(s)	152, 356
KroNI	GCCGGC	2 cut(s)	154, 358
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	3 cut(s)	43, 251, 616
LmnI	GCTCC	4 cut(s)	56, 220, 237, 416
Lsp1109I	GCAGC	4 cut(s)	161, 350, 482, 640
MaeII	ACGT	2 cut(s)	127, 669
MaeIII	GTNAC	1 cut(s)	682
MalI	GATC	3 cut(s)	45, 253, 618
MbiI	CCGCTC	1 cut(s)	223
MboI	GATC	3 cut(s)	43, 251, 616
MboII	GAAGA	1 cut(s)	568
MhlI	GDGCHC	3 cut(s)	53, 167, 336
MluCI	AATT	4 cut(s)	295, 408, 504, 601
MlyI	GAGTC	2 cut(s)	273, 442
MroNI	GCCGGC	2 cut(s)	152, 356
MseI	TTAA	1 cut(s)	465
MspI	CCGG	5 cut(s)	19, 153, 276, 357, 524
MvnI	CGCG	3 cut(s)	313, 315, 349
NaeI	GCCGGC	2 cut(s)	154, 358
NdeII	GATC	3 cut(s)	43, 251, 616
NgoMIV	GCCGGC	2 cut(s)	152, 356
NlaIII	CATG	4 cut(s)	271, 325, 592, 628
NlaIV	GGNNCC	4 cut(s)	33, 165, 166, 382
NmuCI	GTSAC	1 cut(s)	682
NspI	RCATGY	1 cut(s)	271
NspV	TTCGAA	1 cut(s)	572
PaeI	GCATGC	1 cut(s)	271
PaqCI	CACCTGC	1 cut(s)	667
PauI	GCGCGC	2 cut(s)	311, 313
PcsI	WCGNNNNNNNCGW	2 cut(s)	124, 247
PdiI	GCCGGC	2 cut(s)	154, 358
PfeI	GAWTC	1 cut(s)	536
PkrI	GCNGC	9 cut(s)	122, 139, 148, 151, 266, 340, 472, 630, 646
PleI	GAGTC	2 cut(s)	273, 442
PmaCI	CACGTG	1 cut(s)	128
PmlI	CACGTG	1 cut(s)	128
PpsI	GAGTC	2 cut(s)	273, 442
Ppu21I	YACGTR	1 cut(s)	128
Psp124BI	GAGCTC	1 cut(s)	53
PspCI	CACGTG	1 cut(s)	128
PspFI	CCCAGC	2 cut(s)	111, 360
PspN4I	GGNNCC	4 cut(s)	33, 165, 166, 382
PspOMI	GGGCCC	1 cut(s)	163
PspPI	GGNCC	3 cut(s)	31, 163, 164
PteI	GCGCGC	2 cut(s)	311, 313
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	9 cut(s)	121, 138, 147, 150, 265, 339, 471, 629, 645
Sau3AI	GATC	3 cut(s)	43, 251, 616
Sau96I	GGNCC	3 cut(s)	31, 163, 164
SchI	GAGTC	2 cut(s)	273, 442
SduI	GDGCHC	3 cut(s)	53, 167, 336
SfuI	TTCGAA	1 cut(s)	572
SinI	GGWCC	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
SphI	GCATGC	1 cut(s)	271
Sse9I	AATT	4 cut(s)	295, 408, 504, 601
SsiI	CCGC	8 cut(s)	121, 138, 147, 223, 247, 265, 283, 645
SstI	GAGCTC	1 cut(s)	53
StyI	CCWWGG	2 cut(s)	186, 474
TaiI	ACGT	2 cut(s)	130, 672
TaqI	TCGA	3 cut(s)	369, 425, 572
TasI	AATT	4 cut(s)	295, 408, 504, 601
TauI	GCSGC	5 cut(s)	123, 140, 149, 267, 647
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	3 cut(s)	447, 459, 699
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	4 cut(s)	149, 338, 470, 628
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	3 cut(s)	17, 338, 605
TspRI	CASTG	3 cut(s)	447, 459, 699
VpaK11BI	GGWCC	1 cut(s)	31
XagI	CCTNNNNNAGG	1 cut(s)	20
XceI	RCATGY	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.