Rmu_sc0004811.1_g000001

Maspardin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004811.1
OG0012477
Physical Location & Seq
Reverse (-)
257 .. 3978
3722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004811.1_g000001.1.cds

Sequence Viewer

Length: 681 bp
atgaaaggcgtctactcggcgcccggagattacatctacttcaagtcccaggtccctcttcacaagatcccaattggcacaaagcagtggcgatactatgattttggtccgaaagcagtaactccacttatatgtcttcctggaacagcagggacagcagatgtctgttacaagcagatcatggcattgtccatgaagggttacagggtcatttctgttgatattccacgtgtatggaatcatcaagaatggattcaagcatttgaaaagttcttggatgctattgatgttcatcatatacatctctatggtacatcccttgggggctttttggctcaactttttgctcagcatcgtccaagacgggttcgatcgttgatactatcaaatacctttctggacacacgcgacttctctgcagcaatgccatgggctcccattgttagttggaccccctcttttttgctgaaaagatacgtcttatcaggaattcgtgatggcccccacgagccatttattgcggattcagtggactttgttgtttctcaggctgtctgctcagcaattctctttgttaacttagttggccttgattcaatagacagagaaaatgctgagataacaatagaactgaacaatcttgtgctaggctttggatttaagctccactttggtttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Abhydrolase_1

Protein Analysis

226

Amino Acids

25.52

Weight (kDa)

8.4

Isoelectric Point (pI)

26.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012477)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12230
fragaria_vesca FvH4_5g00640 FvH4_5g00640 FvH4_5g00640
malus_domestica MD04G1079900.v1.1 MD06G1074900.v1.1
prunus_persica Prupe.5G079200_v2.0.a1
pyrus_communis pycom04g07200 pycom06g05350
rosa_chinensis RchiOBHm_Chr7g0201621
rosa_laevigata RLG00000003661
rosa_multiflora Rmu_sc0004811.1_g000001
rosa_roxburghii Rroxscaffold_3G00255190
rosa_rugosa Rorug07G0065200
rosa_samantha Rh7AG191900 Rh7BG194100 Rh7CG203100 Rh7DG197100
rosa_wichuraiana Rw7G016830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 19
AccI GTMKAC 1 cut(s) 12
AccII CGCG 1 cut(s) 408
AciI CCGC 1 cut(s) 521
AclWI GGATC 1 cut(s) 61
AcsI RAATTY 1 cut(s) 489
AcvI CACGTG 1 cut(s) 230
AcyI GRCGYC 2 cut(s) 9, 20
AfaI GTAC 1 cut(s) 313
AflIII ACRYGT 1 cut(s) 229
AgsI TTSAA 4 cut(s) 43, 257, 266, 597
AjnI CCWGG 2 cut(s) 48, 139
AluBI AGCT 1 cut(s) 664
AluI AGCT 1 cut(s) 664
AlwI GGATC 1 cut(s) 61
AoxI GGCC 2 cut(s) 499, 586
ApeKI GCWGC 1 cut(s) 419
ApoI RAATTY 1 cut(s) 489
Asp700I GAANNNNTTC 1 cut(s) 252
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 4 cut(s) 52, 107, 450, 500
AsuC2I CCSGG 1 cut(s) 24
AvaII GGWCC 3 cut(s) 52, 107, 450
BanI GGYRCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 436
BauI CACGAG 1 cut(s) 506
BbrPI CACGTG 1 cut(s) 230
BbsI GAAGAC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 431
BccI CCATC 1 cut(s) 491
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciT130I CCWGG 2 cut(s) 50, 141
BcnI CCSGG 1 cut(s) 24
BfaI CTAG 1 cut(s) 647
BfmI CTRYAG 1 cut(s) 417
BfoI RGCGCY 1 cut(s) 23
BisI GCNGC 1 cut(s) 420
BlpI GCTNAGC 2 cut(s) 348, 559
BlsI GCNGC 1 cut(s) 421
Bme1390I CCNGG 3 cut(s) 24, 50, 141
Bme18I GGWCC 3 cut(s) 52, 107, 450
BmgT120I GGNCC 4 cut(s) 52, 107, 450, 500
BmiI GGNNCC 5 cut(s) 21, 54, 435, 452, 502
BmrFI CCNGG 3 cut(s) 24, 50, 141
BmsI GCATC 2 cut(s) 268, 361
BpiI GAAGAC 1 cut(s) 128
Bpu1102I GCTNAGC 2 cut(s) 348, 559
BpuMI CCSGG 1 cut(s) 24
BsaAI YACGTR 1 cut(s) 230
BsaBI GATNNNNATC 1 cut(s) 291
BsaHI GRCGYC 2 cut(s) 9, 20
BsaJI CCNNGG 3 cut(s) 48, 319, 428
Bse3DI GCAATG 1 cut(s) 429
Bse8I GATNNNNATC 1 cut(s) 291
BseBI CCWGG 2 cut(s) 50, 141
BseDI CCNNGG 3 cut(s) 48, 319, 428
BseGI GGATG 2 cut(s) 283, 314
BseJI GATNNNNATC 1 cut(s) 291
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 4 cut(s) 362, 560, 573, 606
BseXI GCAGC 1 cut(s) 431
Bsh1236I CGCG 1 cut(s) 408
Bsh1285I CGRYCG 1 cut(s) 374
BshFI GGCC 2 cut(s) 501, 588
BshNI GGYRCC 1 cut(s) 19
BsiEI CGRYCG 1 cut(s) 374
BsiSI CCGG 1 cut(s) 24
BslFI GGGAC 3 cut(s) 31, 38, 166
BsmFI GGGAC 3 cut(s) 31, 38, 166
BsnI GGCC 2 cut(s) 501, 588
Bsp1286I GDGCHC 1 cut(s) 436
Bsp143I GATC 3 cut(s) 66, 177, 371
Bsp1720I GCTNAGC 2 cut(s) 348, 559
Bsp19I CCATGG 1 cut(s) 428
BspACI CCGC 1 cut(s) 521
BspANI GGCC 2 cut(s) 501, 588
BspCNI CTCAG 4 cut(s) 361, 559, 572, 607
BspFNI CGCG 1 cut(s) 408
BspLI GGNNCC 5 cut(s) 21, 54, 435, 452, 502
BspMAI CTGCAG 1 cut(s) 421
BspPI GGATC 1 cut(s) 61
BspT107I GGYRCC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 429
BssECI CCNNGG 3 cut(s) 48, 319, 428
BssMI GATC 3 cut(s) 66, 177, 371
BssNI GRCGYC 2 cut(s) 9, 20
BssSI CACGAG 1 cut(s) 506
BssT1I CCWWGG 2 cut(s) 319, 428
Bst2BI CACGAG 1 cut(s) 506
Bst2UI CCWGG 2 cut(s) 50, 141
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 2 cut(s) 9, 20
BstBAI YACGTR 1 cut(s) 230
BstDEI CTNAG 5 cut(s) 348, 546, 559, 580, 615
BstDSI CCRYGG 1 cut(s) 428
BstF5I GGATG 2 cut(s) 283, 314
BstFNI CGCG 1 cut(s) 408
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 3 cut(s) 69, 180, 374
BstMBI GATC 3 cut(s) 66, 177, 371
BstMCI CGRYCG 1 cut(s) 374
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 2 cut(s) 50, 141
BstSCI CCNGG 3 cut(s) 22, 48, 139
BstSFI CTRYAG 1 cut(s) 417
BstUI CGCG 1 cut(s) 408
BstV1I GCAGC 1 cut(s) 431
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 66
BstXI CCANNNNNNTGG 1 cut(s) 234
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 2 cut(s) 501, 588
BtgI CCRYGG 1 cut(s) 428
BtsCI GGATG 2 cut(s) 283, 314
BtsI GCAGTG 1 cut(s) 92
BtsIMutI CAGTG 2 cut(s) 92, 534
CfoI GCGC 1 cut(s) 22
Cfr13I GGNCC 4 cut(s) 52, 107, 450, 500
Csp6I GTAC 1 cut(s) 312
CviAII CATG 3 cut(s) 181, 193, 429
CviJI RGCY 9 cut(s) 327, 335, 434, 501, 511, 551, 588, 651, 664
CviKI_1 RGCY 9 cut(s) 327, 335, 434, 501, 511, 551, 588, 651, 664
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 5 cut(s) 348, 546, 559, 580, 615
DinI GGCGCC 1 cut(s) 21
DpnI GATC 3 cut(s) 68, 179, 373
DpnII GATC 3 cut(s) 66, 177, 371
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 2 cut(s) 319, 428
Eco24I GRGCYC 1 cut(s) 436
Eco47I GGWCC 3 cut(s) 52, 107, 450
Eco72I CACGTG 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 489
EcoRII CCWGG 2 cut(s) 48, 139
EcoT14I CCWWGG 2 cut(s) 319, 428
EcoT38I GRGCYC 1 cut(s) 436
EgeI GGCGCC 1 cut(s) 21
EheI GGCGCC 1 cut(s) 21
ErhI CCWWGG 2 cut(s) 319, 428
FaeI CATG 3 cut(s) 184, 196, 432
FalI AAGNNNNNCTT 1 cut(s) 653
FaqI GGGAC 3 cut(s) 31, 38, 166
FatI CATG 3 cut(s) 180, 192, 428
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 420
FokI GGATG 2 cut(s) 290, 301
FriOI GRGCYC 1 cut(s) 436
Fsp4HI GCNGC 1 cut(s) 420
FspBI CTAG 1 cut(s) 647
GlaI GCGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 420
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 2 cut(s) 501, 588
HapII CCGG 1 cut(s) 24
HhaI GCGC 1 cut(s) 22
Hin1I GRCGYC 2 cut(s) 9, 20
Hin1II CATG 3 cut(s) 184, 196, 432
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 4 cut(s) 238, 253, 524, 593
HpaI GTTAAC 1 cut(s) 577
HpaII CCGG 1 cut(s) 24
Hpy166II GTNNAC 3 cut(s) 13, 532, 577
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 4 cut(s) 245, 398, 486, 494
Hpy8I GTNNAC 3 cut(s) 13, 532, 577
HpyAV CCTTC 1 cut(s) 190
HpyCH4IV ACGT 2 cut(s) 229, 477
HpyCH4V TGCA 1 cut(s) 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 5 cut(s) 348, 546, 559, 580, 615
HpySE526I ACGT 2 cut(s) 229, 477
Hsp92I GRCGYC 2 cut(s) 9, 20
Hsp92II CATG 3 cut(s) 184, 196, 432
HspAI GCGC 1 cut(s) 20
KasI GGCGCC 1 cut(s) 19
KspAI GTTAAC 1 cut(s) 577
Kzo9I GATC 3 cut(s) 66, 177, 371
LmnI GCTCC 2 cut(s) 439, 669
Lsp1109I GCAGC 1 cut(s) 431
LweI GCATC 2 cut(s) 268, 361
MaeI CTAG 1 cut(s) 647
MaeII ACGT 2 cut(s) 229, 477
MaeIII GTNAC 3 cut(s) 118, 167, 200
MalI GATC 3 cut(s) 68, 179, 373
MboI GATC 3 cut(s) 66, 177, 371
MboII GAAGA 2 cut(s) 50, 128
MfeI CAATTG 1 cut(s) 72
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 3 cut(s) 72, 489, 564
Mly113I GGCGCC 1 cut(s) 20
MmeI TCCRAC 1 cut(s) 428
MnlI CCTC 2 cut(s) 66, 466
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 2 cut(s) 576, 660
MslI CAYNNNNRTG 3 cut(s) 130, 232, 306
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 3 cut(s) 24, 50, 141
MunI CAATTG 1 cut(s) 72
MvaI CCWGG 2 cut(s) 50, 141
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 1 cut(s) 155
NarI GGCGCC 1 cut(s) 20
NciI CCSGG 1 cut(s) 24
NcoI CCATGG 1 cut(s) 428
NdeII GATC 3 cut(s) 66, 177, 371
NlaIII CATG 3 cut(s) 184, 196, 432
NlaIV GGNNCC 5 cut(s) 21, 54, 435, 452, 502
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 4 cut(s) 238, 253, 524, 593
PfoI TCCNGGA 1 cut(s) 139
PkrI GCNGC 1 cut(s) 421
Ple19I CGATCG 1 cut(s) 374
PluTI GGCGCC 1 cut(s) 23
PmaCI CACGTG 1 cut(s) 230
PmlI CACGTG 1 cut(s) 230
Ppu21I YACGTR 1 cut(s) 230
PpuMI RGGWCCY 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 52
Psp6I CCWGG 2 cut(s) 48, 139
PspCI CACGTG 1 cut(s) 230
PspGI CCWGG 2 cut(s) 48, 139
PspN4I GGNNCC 5 cut(s) 21, 54, 435, 452, 502
PspPI GGNCC 4 cut(s) 52, 107, 450, 500
PspPPI RGGWCCY 1 cut(s) 52
PstI CTGCAG 1 cut(s) 421
PsuI RGATCY 1 cut(s) 66
PvuI CGATCG 1 cut(s) 374
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
RseI CAYNNNNRTG 3 cut(s) 130, 232, 306
SaqAI TTAA 2 cut(s) 576, 660
SatI GCNGC 1 cut(s) 420
Sau3AI GATC 3 cut(s) 66, 177, 371
Sau96I GGNCC 4 cut(s) 52, 107, 450, 500
ScrFI CCNGG 3 cut(s) 24, 50, 141
SduI GDGCHC 1 cut(s) 436
SetI ASST 5 cut(s) 54, 232, 395, 480, 666
SfaNI GCATC 2 cut(s) 268, 361
SfcI CTRYAG 1 cut(s) 417
SfoI GGCGCC 1 cut(s) 21
SinI GGWCC 3 cut(s) 52, 107, 450
SmiMI CAYNNNNRTG 3 cut(s) 130, 232, 306
Sse9I AATT 3 cut(s) 72, 489, 564
SsiI CCGC 1 cut(s) 521
SspDI GGCGCC 1 cut(s) 19
SspMI CTAG 1 cut(s) 647
StyD4I CCNGG 3 cut(s) 22, 48, 139
StyI CCWWGG 2 cut(s) 319, 428
TaiI ACGT 2 cut(s) 232, 480
TaqI TCGA 1 cut(s) 370
TasI AATT 3 cut(s) 72, 489, 564
TfiI GAWTC 4 cut(s) 238, 253, 524, 593
Tru1I TTAA 2 cut(s) 576, 660
Tru9I TTAA 2 cut(s) 576, 660
TscAI CASTG 2 cut(s) 92, 534
TseI GCWGC 1 cut(s) 419
TspDTI ATGAA 3 cut(s) 17, 209, 281
TspRI CASTG 2 cut(s) 92, 534
VpaK11BI GGWCC 3 cut(s) 52, 107, 450
XapI RAATTY 1 cut(s) 489
XmiI GTMKAC 1 cut(s) 12
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.