Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004904.1

Orthogroup ID

OG0018103

Physical Location & Seq

Genomic Coordinates Forward (+)

55707 .. 61569

Gene Structure 5863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

atgagggaaatcaaggtccagaagctagtcctcaacatctccgtcggcgagagcggcgatcgtctcaccaaggccgccaagaatgaaaaaccccctattaatctcagtctcagactctctatacgactggtgaatgagaatgtggcacaatatggtggggatgaagtgtgtgccccgatgccggttataagggacgtcctgtatgatgatgttgcactctatggggctggttatctctgcaatctcactcgaagcttcaaccttcagacaggaaccctcactgaaggaaaacctgttgtttctagcattgcttctttcaagttcaaacaattgtatatgttggacgtgaaggggaagggaagagttctggctggaagaagtgttgtggatgagtccatgctcacaggagaatcgcttcctatattcaaggaaaaagaacttaccgtctcagctggaacaataaattgggatggtcctctgagaattgaagcaacttcaactggctccaattcaatgatttccaagattgttcgcatggttgaggatgctcaaggccatgaagcaccaattcaaaggcttgctgattcaatagctggaccttttgtatacactataatgactctctcagctacaacatttgctttttggtactacattggaactcatatttttcctgatgttttgctcaatgatattgctgggccagatggagattcattgctgttgagcttgaaactagctgtggatgtcttggtagtttcttgcccttgtgcactgggtcttgcaacacccacagcaatcctagttggcacttctcttggagcaaggcaaggactccttgtgagaggagcagatgtattggaacgcttggccagtatagatcatattgctttagacaaggttggtgatggcataaatgatgcaccttctttggctcttgccgacgttgggattgctcttcagattgagggacaagaaaatgctgcttcaaatgctgcatcgattatactacttggaaacaaattatcacaagaacctctttctcatatggaccagaatgtccagaattgtccctatccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005375 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0035434 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

360

Amino Acids

38.45

Weight (kDa)

5.05

Isoelectric Point (pI)

28.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1-E2_ATPase	PF00122	120 - 181	5.8e-16	P-type ATPase actuator domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018103)

Species	Orthologous Gene IDs
malus_domestica	MD09G1288500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0494461 RchiOBHm_Chr5g0017581
rosa_laevigata	RLG00000022668
rosa_multiflora	Rmu_sc0004142.1_g000030 Rmu_sc0004904.1_g000014 Rmu_sc0005381.1_g000001 Rmu_sc0006413.1_g000025
rosa_roxburghii	Rroxscaffold_4G00314810
rosa_samantha	Rh3BG323700 Rh5DG520900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	188
AasI	GACNNNNNNGTC	1 cut(s)	1058
AatII	GACGTC	1 cut(s)	198
AccBSI	CCGCTC	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	606
AciI	CCGC	2 cut(s)	54, 75
AcoI	YGGCCR	1 cut(s)	870
AcuI	CTGAAG	3 cut(s)	248, 303, 944
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	1 cut(s)	650
AfiI	CCNNNNNNNGG	2 cut(s)	181, 948
AjiI	CACGTC	1 cut(s)	346
AjuI	GAANNNNNNNTTGG	2 cut(s)	448, 480
AluBI	AGCT	7 cut(s)	25, 255, 452, 593, 629, 729, 740
AluI	AGCT	7 cut(s)	25, 255, 452, 593, 629, 729, 740
Alw21I	GWGCWC	1 cut(s)	775
Alw26I	GTCTC	3 cut(s)	68, 113, 451
Alw44I	GTGCAC	1 cut(s)	771
AoxI	GGCC	4 cut(s)	72, 553, 701, 870
ApaLI	GTGCAC	1 cut(s)	771
ApeKI	GCWGC	2 cut(s)	983, 995
AseI	ATTAAT	1 cut(s)	99
Asp700I	GAANNNNTTC	1 cut(s)	414
AspS9I	GGNCC	5 cut(s)	16, 473, 596, 701, 1051
AsuHPI	GGTGA	3 cut(s)	58, 142, 917
AvaII	GGWCC	4 cut(s)	16, 473, 596, 1051
BaeGI	GKGCMC	2 cut(s)	175, 775
BalI	TGGCCA	1 cut(s)	872
Bbv12I	GWGCWC	1 cut(s)	775
BbvI	GCAGC	2 cut(s)	970, 982
BccI	CCATC	3 cut(s)	464, 701, 902
BcoDI	GTCTC	3 cut(s)	68, 113, 451
BfaI	CTAG	4 cut(s)	26, 303, 737, 803
BisI	GCNGC	4 cut(s)	55, 75, 984, 996
BlsI	GCNGC	4 cut(s)	56, 76, 985, 997
Bme18I	GGWCC	4 cut(s)	16, 473, 596, 1051
BmgBI	CACGTC	1 cut(s)	346
BmgT120I	GGNCC	5 cut(s)	16, 473, 596, 701, 1051
BmiI	GGNNCC	2 cut(s)	274, 505
BmrI	ACTGGG	1 cut(s)	785
BmsI	GCATC	4 cut(s)	168, 535, 910, 1007
BmuI	ACTGGG	1 cut(s)	785
BpuEI	CTTGAG	1 cut(s)	534
Bsa29I	ATCGAT	1 cut(s)	1001
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	840, 870
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 948
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	4 cut(s)	132, 505, 780, 873
Bse3DI	GCAATG	2 cut(s)	306, 716
BseCI	ATCGAT	1 cut(s)	1001
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	5 cut(s)	166, 394, 475, 550, 751
BseLI	CCNNNNNNNGG	2 cut(s)	181, 948
BseMI	GCAATG	2 cut(s)	306, 716
BseMII	CTCAG	5 cut(s)	118, 124, 462, 470, 639
BseNI	ACTGG	4 cut(s)	132, 505, 780, 873
BseRI	GAGGAG	1 cut(s)	861
BseSI	GKGCMC	2 cut(s)	175, 775
BseXI	GCAGC	2 cut(s)	970, 982
BseYI	CCCAGC	1 cut(s)	698
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	4 cut(s)	74, 555, 703, 872
BshVI	ATCGAT	1 cut(s)	1001
BsiEI	CGRYCG	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	775
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	3 cut(s)	206, 984, 1056
BslI	CCNNNNNNNGG	2 cut(s)	181, 948
BsmAI	GTCTC	3 cut(s)	68, 113, 451
BsmBI	CGTCTC	2 cut(s)	68, 451
BsmFI	GGGAC	3 cut(s)	206, 984, 1056
BsnI	GGCC	4 cut(s)	74, 555, 703, 872
Bsp1286I	GDGCHC	2 cut(s)	175, 775
Bsp143I	GATC	2 cut(s)	58, 880
BspACI	CCGC	2 cut(s)	54, 75
BspANI	GGCC	4 cut(s)	74, 555, 703, 872
BspCNI	CTCAG	5 cut(s)	117, 123, 461, 471, 638
BspDI	ATCGAT	1 cut(s)	1001
BspLI	GGNNCC	2 cut(s)	274, 505
BspQI	GCTCTTC	1 cut(s)	963
BsrBI	CCGCTC	1 cut(s)	54
BsrDI	GCAATG	2 cut(s)	306, 716
BsrFI	RCCGGY	1 cut(s)	181
BsrI	ACTGG	4 cut(s)	132, 505, 780, 873
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	58, 880
BssNAI	GTATAC	1 cut(s)	607
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	69
Bst1107I	GTATAC	1 cut(s)	607
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	2 cut(s)	355, 963
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	579
BstDEI	CTNAG	6 cut(s)	104, 110, 448, 479, 625, 1080
BstF5I	GGATG	5 cut(s)	166, 394, 475, 550, 751
BstKTI	GATC	2 cut(s)	61, 883
BstMAI	GTCTC	3 cut(s)	68, 113, 451
BstMBI	GATC	2 cut(s)	58, 880
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 992
BstSLI	GKGCMC	2 cut(s)	175, 775
BstV1I	GCAGC	2 cut(s)	970, 982
BstZ17I	GTATAC	1 cut(s)	607
Bsu15I	ATCGAT	1 cut(s)	1001
BsuRI	GGCC	4 cut(s)	74, 555, 703, 872
BsuTUI	ATCGAT	1 cut(s)	1001
BtrI	CACGTC	1 cut(s)	346
BtsCI	GGATG	5 cut(s)	166, 394, 475, 550, 751
BtsIMutI	CAGTG	2 cut(s)	279, 773
Cac8I	GCNNGC	1 cut(s)	579
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	5 cut(s)	16, 473, 596, 701, 1051
ClaI	ATCGAT	1 cut(s)	1001
Csp6I	GTAC	1 cut(s)	649
CviAII	CATG	3 cut(s)	397, 535, 557
CviQI	GTAC	1 cut(s)	649
DdeI	CTNAG	6 cut(s)	104, 110, 448, 479, 625, 1080
DpnI	GATC	2 cut(s)	60, 882
DpnII	GATC	2 cut(s)	58, 880
DrdI	GACNNNNNNGTC	1 cut(s)	1058
DseDI	GACNNNNNNGTC	1 cut(s)	1058
EaeI	YGGCCR	1 cut(s)	870
Eam1104I	CTCTTC	2 cut(s)	355, 963
EarI	CTCTTC	2 cut(s)	355, 963
Eco130I	CCWWGG	1 cut(s)	69
Eco47I	GGWCC	4 cut(s)	16, 473, 596, 1051
Eco57I	CTGAAG	3 cut(s)	248, 303, 944
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
Esp3I	CGTCTC	2 cut(s)	68, 451
FaeI	CATG	3 cut(s)	400, 538, 560
FalI	AAGNNNNNCTT	4 cut(s)	822, 854, 1023, 1055
FaqI	GGGAC	3 cut(s)	206, 984, 1056
FatI	CATG	3 cut(s)	396, 534, 556
FauNDI	CATATG	1 cut(s)	1047
FblI	GTMKAC	1 cut(s)	606
Fnu4HI	GCNGC	4 cut(s)	55, 75, 984, 996
FokI	GGATG	5 cut(s)	173, 401, 482, 557, 758
Fsp4HI	GCNGC	4 cut(s)	55, 75, 984, 996
FspBI	CTAG	4 cut(s)	26, 303, 737, 803
GluI	GCNGC	4 cut(s)	55, 75, 984, 996
GsaI	CCCAGC	1 cut(s)	702
HaeIII	GGCC	4 cut(s)	74, 555, 703, 872
HapII	CCGG	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	400, 538, 560
HindIII	AAGCTT	1 cut(s)	253
HinfI	GANTC	7 cut(s)	114, 392, 410, 584, 619, 713, 834
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	3 cut(s)	58, 142, 917
Hpy166II	GTNNAC	2 cut(s)	607, 773
Hpy188I	TCNGA	4 cut(s)	113, 267, 480, 963
Hpy188III	TCNNGA	3 cut(s)	19, 674, 1063
Hpy8I	GTNNAC	2 cut(s)	607, 773
Hpy99I	CGWCG	2 cut(s)	47, 947
HpyAV	CCTTC	5 cut(s)	272, 278, 343, 349, 936
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4IV	ACGT	3 cut(s)	195, 345, 945
HpyCH4V	TGCA	6 cut(s)	215, 240, 773, 785, 923, 998
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 992
HpyF3I	CTNAG	6 cut(s)	104, 110, 448, 479, 625, 1080
HpySE526I	ACGT	3 cut(s)	195, 345, 945
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	400, 538, 560
Kzo9I	GATC	2 cut(s)	58, 880
LguI	GCTCTTC	1 cut(s)	963
LmnI	GCTCC	3 cut(s)	509, 821, 848
Lsp1109I	GCAGC	2 cut(s)	970, 982
LweI	GCATC	4 cut(s)	168, 535, 910, 1007
MaeI	CTAG	4 cut(s)	26, 303, 737, 803
MaeII	ACGT	3 cut(s)	195, 345, 945
MalI	GATC	2 cut(s)	60, 882
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	2 cut(s)	58, 880
MboII	GAAGA	3 cut(s)	372, 387, 950
MfeI	CAATTG	1 cut(s)	329
MhlI	GDGCHC	2 cut(s)	175, 775
MlsI	TGGCCA	1 cut(s)	872
MluCI	AATT	7 cut(s)	329, 463, 483, 508, 567, 1022, 1066
MluNI	TGGCCA	1 cut(s)	872
MlyI	GAGTC	4 cut(s)	108, 401, 613, 828
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	7 cut(s)	41, 287, 486, 535, 839, 961, 1047
Mox20I	TGGCCA	1 cut(s)	872
MroXI	GAANNNNTTC	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	872
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	614
Msp20I	TGGCCA	1 cut(s)	872
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	1 cut(s)	182
MunI	CAATTG	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	54, 992
NdeI	CATATG	1 cut(s)	1047
NdeII	GATC	2 cut(s)	58, 880
NlaIII	CATG	3 cut(s)	400, 538, 560
NlaIV	GGNNCC	2 cut(s)	274, 505
PciSI	GCTCTTC	1 cut(s)	963
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	3 cut(s)	410, 584, 713
PkrI	GCNGC	4 cut(s)	56, 76, 985, 997
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	4 cut(s)	108, 400, 613, 828
PpsI	GAGTC	4 cut(s)	108, 400, 613, 828
PshBI	ATTAAT	1 cut(s)	99
PsiI	TTATAA	1 cut(s)	188
PspFI	CCCAGC	1 cut(s)	698
PspN4I	GGNNCC	2 cut(s)	274, 505
PspPI	GGNCC	5 cut(s)	16, 473, 596, 701, 1051
PvuI	CGATCG	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	1 cut(s)	650
RsaNI	GTAC	1 cut(s)	649
RseI	CAYNNNNRTG	1 cut(s)	614
SapI	GCTCTTC	1 cut(s)	963
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	4 cut(s)	55, 75, 984, 996
Sau3AI	GATC	2 cut(s)	58, 880
Sau96I	GGNCC	5 cut(s)	16, 473, 596, 701, 1051
SchI	GAGTC	4 cut(s)	108, 401, 613, 828
SduI	GDGCHC	2 cut(s)	175, 775
SfaNI	GCATC	4 cut(s)	168, 535, 910, 1007
SinI	GGWCC	4 cut(s)	16, 473, 596, 1051
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	1 cut(s)	549
SmoI	CTYRAG	1 cut(s)	549
Sse9I	AATT	7 cut(s)	329, 463, 483, 508, 567, 1022, 1066
SsiI	CCGC	2 cut(s)	54, 75
SspMI	CTAG	4 cut(s)	26, 303, 737, 803
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	445
TaiI	ACGT	3 cut(s)	198, 348, 948
TaqI	TCGA	2 cut(s)	250, 1001
TasI	AATT	7 cut(s)	329, 463, 483, 508, 567, 1022, 1066
TauI	GCSGC	2 cut(s)	57, 77
TfiI	GAWTC	3 cut(s)	410, 584, 713
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	2 cut(s)	286, 780
TseI	GCWGC	2 cut(s)	983, 995
TspDTI	ATGAA	4 cut(s)	99, 177, 573, 705
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	2 cut(s)	286, 780
VneI	GTGCAC	1 cut(s)	771
VpaK11BI	GGWCC	4 cut(s)	16, 473, 596, 1051
VspI	ATTAAT	1 cut(s)	99
XmiI	GTMKAC	1 cut(s)	606
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	4 cut(s)	26, 303, 737, 803
ZraI	GACGTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.