Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004947.1

Orthogroup ID

OG0008055

Physical Location & Seq

Genomic Coordinates Reverse (-)

131902 .. 138314

Gene Structure 6413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3618 bp

atgtcgagcgatccgaatccaaacccaccgcctctgacctcgacctccgccgccggcaacgcagaccccgccgccgcatcgtctccgactcatccttctccctccagagccaagctccgtaagattcctcccattccgattcgccggagccccaggcatttggccgaggtcaacgaacaatgcgacgaagagggagacgatgatgaagatgacgacgacgacgatgattttagggaacgtagagaaaccacgccgatcctattggctgcgtcgctagggctcaatcacatacggactcgatcggcgccgtcaccgctccggttctcttcctccgccggcgagcctctaattcccggtgaggaagcgaataatatgaactacacggtcaagtcaaagccccaaccaggtctgaatttcgatgtttttagcttttctgtaaaattggatcaatatgagttcaaatcctttttcaattttgaaattaatttggcaaatatttacaatgtgtttatagtgaaatatgtgcactcgagtcaatcaaaatcgctgagaactccatcgccactcaatcctgtgttggagggtggtcaagctggtcttacaaaggaaatgcagtcgcctaggtttcaggcaatactgcgagttacgagtggacgaaagaagagaacacctgacatcaagagtttctctcatgagctaaattccaaaggggttagaccatttccggtgtggaagtcccgtgcattcgggcatatggaggtgacattaccttcacctgtggcaagatttgagaggttgaaggatgaggttgatgttgatttgggtgcatttgcgggtgatttggtgggtattcttgaaaagtcttcagagtctcaccctgaatggaaagagaattttgaggatttgctagttattgcccggcagtgtgcaaagatgtctcctaacgaattttggatcaagtgtgaaggcattgtacagaagttggatgaccggcgtcaagagctaccaatgggggccctgaaacaagcccatactcgtcttctttttattcttactcggtgcacacggcttgtgcagttccacaaagagagtggttatgaggaagagcacattcttagtcttcaccagctcagtgaccttggtgtttatccagaacaaattttggacggtgcagaacagaagtttagtggtccactgagtgggaaagatgcaaatgagaagcccaagaagtctcgtgagcaagaaatagctagtggagctgatggtgcggaggttagcactgccaagagcgttgaatctactggtagctataggatgtcatcttggaaaaaacttccatcggctgctgagaaaaagcagaaagtacctgattctgttgatacaccatcgaaggacaaatcagaacgtttgcatgccaaagaaattctggatactccatcatcccatcatgaacactcagagatgtccacaagtgcacaaagagtatcttgggtttcaattggggagcagcaaaatgttacatatgagaatttgatgatctgtcgtatatgtgaggttgaaataccaactgtccacgtagaggagcactctcgaatatgtacaattgctgacagatgtgacttgaagggcttaactgtgaatgaaagacttgaaagagttgctgaagctcttgaaaggataatggaatctcggacaacaaaaaatgttgatacacaagagacaagttttgatgctgcaaaagtgtatccatcaagtatccatgaagattttattgccaaaagaaaaaaaagtatccatgaagatttagatgacttatcacctaaacgaaatgacttgcctcaagacatgcttgattgtgttcctgatgctgacaattcttttgtcatggaagatcttaatattatgcctgacatgtcatgtgacgcacgttctgctttgacacctgaacaagggaccagaacctcatcagcaggtagctccactccaagatcgccacttttaacccctagaaccactcatattgaaatgctgttgagtggaaggggaacaataccagaacttgagaattgtcagcagatacacaagctactggatattgctcgttctgttgcaaatgttagcaattgtgaatacagtgcattggagtatatgcttgaccgactagaagacctaaaatatgctatccaggacaggaaggtggatgcccttgttgtagagacgtttggaagacgtattgaaaaattattgcaggaaaaatatgtacatctttgtgggcagatagaagatgagaaattggattcatcaaatggtatggcagacgaagaaagttcagtggaagatgatacagttcgtagtctacgtaccagccccatcaatccgtcttctaaggatcgaacatctattgaagattttgaaataataaaaccaataagcaggggtgcatttggacgagtttttcttgccagaaaacgagcgactggtgacttatttgctataaaggtattaaagaaggctgatatgattcgtaagaatgcagttgaaagtattttggcagagcgtaacatccttattttggttcgcaatccttttgtggtccgatttttctattccttcacgtgcagggaaaatctttatctggtcatggagtacttaaacggtggagacctttactctttattgagaaatctaggctgcttagatgaggatatggcccgtgttcttgctttggagtatctgcattcattaaatgttattcatagagacttgaagccagacaacttgttgattggtcaagatggtcacatcaagttgacagattttgggctctccaaggttggtctaatcagcagcactgatgacttagcaggtccatctgttggtgatactgattttgttggagacgatgaaccaaaaagtcaatcttcatctcagaggtcacagcgtcaaaaacattcagttgttggcacccccgattatttggcacctgaaatacttcttggcatgggacatagtgcaactgctgattggtggtctgtgggtgttatactttttgaactacttgttggcattccaccattcaatgcagaacatccacagcaaattttcaacaatataataaacagagatatcccctggcctaaggtacctgaggagatgagcaacgaagcatatgacttaattgaccaattactgactgaaaacccagttcaaagacttggagcgacaggtgctagggaggtgaagcaacatacttttttcaaggatattaactgggatacacttgcaaggcagaaggctatgttcataccttcaacagatgcacatgatacaagttatttcatgagccggtacatatggaatccagaagatgagcatgttaatggaggcagtgactttgatgacctgactgaaacatgcagcagtactggttcatattatctagatgaagacggggatgagtgtggtagtttggcggacttcagtgctccagcccttgatgtgcagtactcatttagtaatttctcatttaagaacttgtctcagctggcttccatcaattatgatcttgtcgtgaagaccaaggagtcaccagaagcctccaagtcatctgttccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009987 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032502 GO:0032989 GO:0035556 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

1205

Amino Acids

135.0

Weight (kDa)

5.17

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IREH1	PF26031	244 - 362	1.6e-51	IREH1-like domain
Pkinase	PF00069	804 - 1086	2.9e-59	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	805 - 945	2.8e-21	Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr	PF07714	978 - 1072	6.5e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62310
fragaria_vesca	FvH4_7g27920 FvH4_7g27920 FvH4_7g27920 FvH4_7g27920 FvH4_7g27920
malus_domestica	MD00G1104600.v1.1 MD07G1256300.v1.1
prunus_persica	Prupe.2G255800_v2.0.a1 Prupe.2G280200_v2.0.a1 Prupe.2G280200_v2.0.a1
pyrus_communis	pycom01g19590 pycom07g22920
rosa_chinensis	RchiOBHm_Chr1g0374881
rosa_laevigata	RLG00000026710
rosa_multiflora	Rmu_sc0003145.1_g000005 Rmu_sc0004947.1_g000030
rosa_roxburghii	Rroxscaffold_4G00283210
rosa_rugosa	Rorug01G0385500
rosa_samantha	Rh1AG397100 Rh1BG360900 Rh1CG374600 Rh1DG391900
rosa_wichuraiana	Rw1G035210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3583
Acc36I	ACCTGC	2 cut(s)	1961, 2855
Acc65I	GGTACC	1 cut(s)	3142
AccB1I	GGYRCC	4 cut(s)	304, 2963, 2980, 3142
AccB7I	CCANNNNNTGG	2 cut(s)	1199, 2876
AccBSI	CCGCTC	1 cut(s)	316
AccI	GTMKAC	1 cut(s)	2356
AclI	AACGTT	1 cut(s)	1405
AclWI	GGATC	5 cut(s)	5, 250, 453, 962, 2397
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	8 cut(s)	412, 700, 892, 947, 1158, 1422, 1528, 3099
AcuI	CTGAAG	3 cut(s)	849, 1683, 3463
AcvI	CACGTG	1 cut(s)	2616
AcyI	GRCGYC	2 cut(s)	305, 994
AdeI	CACNNNGTG	1 cut(s)	1199
AfiI	CCNNNNNNNGG	6 cut(s)	404, 1199, 1579, 1949, 2572, 2876
AflIII	ACRYGT	1 cut(s)	1911
AjnI	CCWGG	4 cut(s)	152, 403, 2184, 3131
AjuI	GAANNNNNNNTTGG	4 cut(s)	2979, 3011, 3045, 3077
Alw21I	GWGCWC	6 cut(s)	528, 1064, 1110, 1477, 1587, 3487
Alw44I	GTGCAC	3 cut(s)	524, 1060, 1473
AlwI	GGATC	5 cut(s)	5, 250, 453, 962, 2397
Ama87I	CYCGRG	1 cut(s)	529
AoxI	GGCC	4 cut(s)	162, 1014, 2709, 3134
ApaI	GGGCCC	1 cut(s)	1018
ApaLI	GTGCAC	3 cut(s)	524, 1060, 1473
ApeKI	GCWGC	7 cut(s)	266, 1343, 1507, 1733, 2691, 2847, 3417
ApoI	RAATTY	8 cut(s)	412, 700, 892, 947, 1158, 1422, 1528, 3099
ArsI	GACNNNNNNTTYG	2 cut(s)	1862, 1894
AseI	ATTAAT	1 cut(s)	483
Asp700I	GAANNNNTTC	1 cut(s)	2991
Asp718I	GGTACC	1 cut(s)	3142
AspA2I	CCTAGG	1 cut(s)	620
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	7 cut(s)	1014, 1015, 1190, 1953, 2593, 2710, 2867
AsuC2I	CCSGG	2 cut(s)	354, 919
AvaI	CYCGRG	1 cut(s)	529
AvaII	GGWCC	4 cut(s)	1190, 1953, 2593, 2867
AvrII	CCTAGG	1 cut(s)	620
AxyI	CCTNAGG	2 cut(s)	3138, 3147
BaeGI	GKGCMC	4 cut(s)	528, 1018, 1064, 1477
BanI	GGYRCC	4 cut(s)	304, 2963, 2980, 3142
BanII	GRGCYC	4 cut(s)	152, 282, 1018, 2826
BarI	GAAGNNNNNNTAC	2 cut(s)	957, 989
BauI	CACGAG	1 cut(s)	1233
BbrPI	CACGTG	1 cut(s)	2616
BbsI	GAAGAC	8 cut(s)	855, 1031, 1112, 2172, 2233, 2373, 3453, 3581
Bbv12I	GWGCWC	6 cut(s)	528, 1064, 1110, 1477, 1587, 3487
BbvI	GCAGC	7 cut(s)	253, 1330, 1519, 1720, 2678, 2859, 3429
BceAI	ACGGC	2 cut(s)	292, 1082
BciT130I	CCWGG	4 cut(s)	154, 405, 2186, 3133
BciVI	GTATCC	5 cut(s)	1423, 1755, 1766, 1802, 3268
BcnI	CCSGG	2 cut(s)	354, 919
BfaI	CTAG	9 cut(s)	275, 621, 908, 1251, 2007, 2162, 2687, 3231, 3440
BfmI	CTRYAG	1 cut(s)	1309
BfoI	RGCGCY	1 cut(s)	308
BfuAI	ACCTGC	2 cut(s)	1961, 2855
BfuI	GTATCC	5 cut(s)	1423, 1755, 1766, 1802, 3268
BglII	AGATCT	1 cut(s)	1891
BlnI	CCTAGG	1 cut(s)	620
BmcAI	AGTACT	3 cut(s)	2648, 3424, 3506
Bme1390I	CCNGG	6 cut(s)	154, 354, 405, 919, 2186, 3133
Bme18I	GGWCC	4 cut(s)	1190, 1953, 2593, 2867
BmeT110I	CYCGRG	1 cut(s)	529
BmgT120I	GGNCC	7 cut(s)	1014, 1015, 1190, 1953, 2593, 2710, 2867
BmiI	GGNNCC	8 cut(s)	149, 306, 1015, 1016, 1954, 2965, 2982, 3144
BmrFI	CCNGG	6 cut(s)	154, 354, 405, 919, 2186, 3133
BmrI	ACTGGG	2 cut(s)	3197, 3280
BmsI	GCATC	6 cut(s)	86, 1198, 1720, 1855, 2191, 3307
BmuI	ACTGGG	2 cut(s)	3197, 3280
BoxI	GACNNNNGTC	1 cut(s)	993
BpiI	GAAGAC	8 cut(s)	855, 1031, 1112, 2172, 2233, 2373, 3453, 3581
BplI	GAGNNNNNCTC	6 cut(s)	99, 131, 673, 705, 1571, 1603
BpmI	CTGGAG	2 cut(s)	88, 3471
BpuEI	CTTGAG	2 cut(s)	1824, 2081
BpuMI	CCSGG	2 cut(s)	354, 919
BsaAI	YACGTR	3 cut(s)	1576, 2360, 2616
BsaBI	GATNNNNATC	1 cut(s)	15
BsaHI	GRCGYC	2 cut(s)	305, 994
BsaI	GGTCTC	1 cut(s)	2655
BsaJI	CCNNGG	7 cut(s)	152, 165, 620, 1138, 2829, 3131, 3579
BsaWI	WCCGGW	2 cut(s)	318, 724
Bsc4I	CCNNNNNNNGG	6 cut(s)	404, 1199, 1579, 1949, 2572, 2876
Bse118I	RCCGGY	4 cut(s)	53, 335, 990, 3345
Bse1I	ACTGG	6 cut(s)	1306, 2094, 2482, 3203, 3275, 3430
Bse21I	CCTNAGG	2 cut(s)	3138, 3147
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	4 cut(s)	154, 405, 2186, 3133
BseDI	CCNNGG	7 cut(s)	152, 165, 620, 1138, 2829, 3131, 3579
BseGI	GGATG	9 cut(s)	91, 808, 991, 1320, 1439, 2206, 2562, 3088, 3460
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	6 cut(s)	404, 1199, 1579, 1949, 2572, 2876
BseMII	CTCAG	8 cut(s)	539, 1144, 1187, 1338, 1470, 2942, 3138, 3554
BseNI	ACTGG	6 cut(s)	1306, 2094, 2482, 3203, 3275, 3430
BseRI	GAGGAG	2 cut(s)	1595, 3164
BseSI	GKGCMC	4 cut(s)	528, 1018, 1064, 1477
BseXI	GCAGC	7 cut(s)	253, 1330, 1519, 1720, 2678, 2859, 3429
BsgI	GTGCAG	4 cut(s)	1094, 1191, 2638, 3521
Bsh1285I	CGRYCG	1 cut(s)	302
BshFI	GGCC	4 cut(s)	164, 1016, 2711, 3136
BshNI	GGYRCC	4 cut(s)	304, 2963, 2980, 3142
BsiEI	CGRYCG	1 cut(s)	302
BsiHKAI	GWGCWC	6 cut(s)	528, 1064, 1110, 1477, 1587, 3487
BsiHKCI	CYCGRG	1 cut(s)	529
BsiSI	CCGG	9 cut(s)	54, 145, 319, 336, 354, 725, 919, 991, 3346
BslFI	GGGAC	3 cut(s)	721, 1966, 3018
BslI	CCNNNNNNNGG	6 cut(s)	404, 1199, 1579, 1949, 2572, 2876
BsmBI	CGTCTC	4 cut(s)	87, 189, 2210, 2892
BsmFI	GGGAC	3 cut(s)	721, 1966, 3018
BsmI	GAATGC	4 cut(s)	743, 2536, 2737, 3066
BsnI	GGCC	4 cut(s)	164, 1016, 2711, 3136
Bso31I	GGTCTC	1 cut(s)	2655
BsoBI	CYCGRG	1 cut(s)	529
Bsp120I	GGGCCC	1 cut(s)	1014
Bsp1407I	TGTACA	3 cut(s)	973, 1598, 2260
BspANI	GGCC	4 cut(s)	164, 1016, 2711, 3136
BspCNI	CTCAG	8 cut(s)	540, 1143, 1188, 1339, 1469, 2941, 3139, 3553
BspHI	TCATGA	3 cut(s)	691, 1447, 3339
BspLI	GGNNCC	8 cut(s)	149, 306, 1015, 1016, 1954, 2965, 2982, 3144
BspMI	ACCTGC	2 cut(s)	1961, 2855
BspPI	GGATC	5 cut(s)	5, 250, 453, 962, 2397
BspQI	GCTCTTC	1 cut(s)	1098
BspT107I	GGYRCC	4 cut(s)	304, 2963, 2980, 3142
BspTNI	GGTCTC	1 cut(s)	2655
BsrBI	CCGCTC	1 cut(s)	316
BsrFI	RCCGGY	4 cut(s)	53, 335, 990, 3345
BsrGI	TGTACA	3 cut(s)	973, 1598, 2260
BsrI	ACTGG	6 cut(s)	1306, 2094, 2482, 3203, 3275, 3430
BssAI	RCCGGY	4 cut(s)	53, 335, 990, 3345
BssECI	CCNNGG	7 cut(s)	152, 165, 620, 1138, 2829, 3131, 3579
BssNI	GRCGYC	2 cut(s)	305, 994
BssSI	CACGAG	1 cut(s)	1233
BssT1I	CCWWGG	4 cut(s)	620, 1138, 2829, 3579
Bst2BI	CACGAG	1 cut(s)	1233
Bst2UI	CCWGG	4 cut(s)	154, 405, 2186, 3133
Bst4CI	ACNGT	7 cut(s)	385, 1169, 1570, 1636, 2135, 2347, 2657
Bst6I	CTCTTC	4 cut(s)	183, 331, 656, 1098
BstACI	GRCGYC	2 cut(s)	305, 994
BstAPI	GCANNNNNTGC	1 cut(s)	1931
BstAUI	TGTACA	3 cut(s)	973, 1598, 2260
BstBAI	YACGTR	3 cut(s)	1576, 2360, 2616
BstC8I	GCNNGC	5 cut(s)	55, 337, 341, 1413, 3546
BstENI	CCTNNNNNAGG	1 cut(s)	1947
BstF5I	GGATG	9 cut(s)	91, 808, 991, 1320, 1439, 2206, 2562, 3088, 3460
BstH2I	RGCGCY	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	307
BstMCI	CGRYCG	1 cut(s)	302
BstMWI	GCNNNNNNNGC	8 cut(s)	59, 68, 313, 1000, 1256, 1265, 1931, 3227
BstNI	CCWGG	4 cut(s)	154, 405, 2186, 3133
BstNSI	RCATGY	5 cut(s)	1415, 1849, 1915, 3377, 3417
BstPAI	GACNNNNGTC	1 cut(s)	993
BstSCI	CCNGG	6 cut(s)	152, 352, 403, 917, 2184, 3131
BstSFI	CTRYAG	1 cut(s)	1309
BstSLI	GKGCMC	4 cut(s)	528, 1018, 1064, 1477
BstSNI	TACGTA	1 cut(s)	2360
BstV1I	GCAGC	7 cut(s)	253, 1330, 1519, 1720, 2678, 2859, 3429
BstV2I	GAAGAC	8 cut(s)	855, 1031, 1112, 2172, 2233, 2373, 3453, 3581
BstX2I	RGATCY	1 cut(s)	1891
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	1891
Bsu36I	CCTNAGG	2 cut(s)	3138, 3147
BsuI	GTATCC	5 cut(s)	1423, 1755, 1766, 1802, 3268
BsuRI	GGCC	4 cut(s)	164, 1016, 2711, 3136
BtgZI	GCGATG	1 cut(s)	543
BtsCI	GGATG	9 cut(s)	91, 808, 991, 1320, 1439, 2206, 2562, 3088, 3460
BtsI	GCAGTG	3 cut(s)	929, 1278, 3394
BtsIMutI	CAGTG	9 cut(s)	929, 1138, 1193, 1278, 2140, 2337, 2850, 3394, 3487
BveI	ACCTGC	2 cut(s)	1961, 2855
Cac8I	GCNNGC	5 cut(s)	55, 337, 341, 1413, 3546
CciI	TCATGA	3 cut(s)	691, 1447, 3339
CfoI	GCGC	1 cut(s)	307
Cfr10I	RCCGGY	4 cut(s)	53, 335, 990, 3345
Cfr13I	GGNCC	7 cut(s)	1014, 1015, 1190, 1953, 2593, 2710, 2867
CseI	GACGC	4 cut(s)	258, 983, 1931, 2930
CsiI	ACCWGGT	1 cut(s)	403
CspCI	CAANNNNNGTGG	4 cut(s)	1072, 1107, 2002, 2037
DinI	GGCGCC	1 cut(s)	306
DraIII	CACNNNGTG	1 cut(s)	1199
DrdI	GACNNNNNNGTC	1 cut(s)	3583
DseDI	GACNNNNNNGTC	1 cut(s)	3583
EaeI	YGGCCR	1 cut(s)	162
Eam1104I	CTCTTC	4 cut(s)	183, 331, 656, 1098
EarI	CTCTTC	4 cut(s)	183, 331, 656, 1098
EciI	GGCGGA	3 cut(s)	37, 322, 3488
Eco105I	TACGTA	1 cut(s)	2360
Eco130I	CCWWGG	4 cut(s)	620, 1138, 2829, 3579
Eco24I	GRGCYC	4 cut(s)	152, 282, 1018, 2826
Eco31I	GGTCTC	1 cut(s)	2655
Eco32I	GATATC	1 cut(s)	3127
Eco47I	GGWCC	4 cut(s)	1190, 1953, 2593, 2867
Eco57I	CTGAAG	3 cut(s)	849, 1683, 3463
Eco72I	CACGTG	1 cut(s)	2616
Eco81I	CCTNAGG	2 cut(s)	3138, 3147
Eco88I	CYCGRG	1 cut(s)	529
EcoNI	CCTNNNNNAGG	1 cut(s)	1947
EcoO109I	RGGNCCY	2 cut(s)	1014, 1015
EcoRII	CCWGG	4 cut(s)	152, 403, 2184, 3131
EcoRV	GATATC	1 cut(s)	3127
EcoT14I	CCWWGG	4 cut(s)	620, 1138, 2829, 3579
EcoT38I	GRGCYC	4 cut(s)	152, 282, 1018, 2826
EgeI	GGCGCC	1 cut(s)	306
EheI	GGCGCC	1 cut(s)	306
ErhI	CCWWGG	4 cut(s)	620, 1138, 2829, 3579
Esp3I	CGTCTC	4 cut(s)	87, 189, 2210, 2892
FalI	AAGNNNNNCTT	8 cut(s)	582, 614, 1471, 1503, 1833, 1865, 2905, 2937
FaqI	GGGAC	3 cut(s)	721, 1966, 3018
FauI	CCCGC	2 cut(s)	76, 826
FauNDI	CATATG	4 cut(s)	753, 1522, 3169, 3353
FblI	GTMKAC	1 cut(s)	2356
FokI	GGATG	9 cut(s)	78, 815, 998, 1327, 1426, 2213, 2549, 3075, 3467
FriOI	GRGCYC	4 cut(s)	152, 282, 1018, 2826
FspBI	CTAG	9 cut(s)	275, 621, 908, 1251, 2007, 2162, 2687, 3231, 3440
GlaI	GCGC	1 cut(s)	306
GsuI	CTGGAG	2 cut(s)	88, 3471
HaeII	RGCGCY	1 cut(s)	308
HaeIII	GGCC	4 cut(s)	164, 1016, 2711, 3136
HapII	CCGG	9 cut(s)	54, 145, 319, 336, 354, 725, 919, 991, 3346
HgaI	GACGC	4 cut(s)	258, 983, 1931, 2930
HhaI	GCGC	1 cut(s)	307
Hin1I	GRCGYC	2 cut(s)	305, 994
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HincII	GTYRAC	2 cut(s)	172, 2811
HindII	GTYRAC	2 cut(s)	172, 2811
HpaII	CCGG	9 cut(s)	54, 145, 319, 336, 354, 725, 919, 991, 3346
Hpy99I	CGWCG	5 cut(s)	188, 218, 221, 224, 274
HpyCH4III	ACNGT	7 cut(s)	385, 1169, 1570, 1636, 2135, 2347, 2657
HpyCH4IV	ACGT	8 cut(s)	238, 1405, 1575, 1927, 2219, 2230, 2359, 2615
HpyF10VI	GCNNNNNNNGC	8 cut(s)	59, 68, 313, 1000, 1256, 1265, 1931, 3227
HpySE526I	ACGT	8 cut(s)	238, 1405, 1575, 1927, 2219, 2230, 2359, 2615
Hsp92I	GRCGYC	2 cut(s)	305, 994
HspAI	GCGC	1 cut(s)	305
KasI	GGCGCC	1 cut(s)	304
KpnI	GGTACC	1 cut(s)	3146
KroI	GCCGGC	2 cut(s)	53, 335
KroNI	GCCGGC	2 cut(s)	55, 337
LguI	GCTCTTC	1 cut(s)	1098
LmnI	GCTCC	9 cut(s)	120, 147, 321, 1256, 1504, 1582, 1982, 3218, 3490
Lsp1109I	GCAGC	7 cut(s)	253, 1330, 1519, 1720, 2678, 2859, 3429
LweI	GCATC	6 cut(s)	86, 1198, 1720, 1855, 2191, 3307
MabI	ACCWGGT	1 cut(s)	403
MaeI	CTAG	9 cut(s)	275, 621, 908, 1251, 2007, 2162, 2687, 3231, 3440
MaeII	ACGT	8 cut(s)	238, 1405, 1575, 1927, 2219, 2230, 2359, 2615
MbiI	CCGCTC	1 cut(s)	316
MfeI	CAATTG	3 cut(s)	1497, 1602, 2122
MflI	RGATCY	1 cut(s)	1891
Mly113I	GGCGCC	1 cut(s)	305
MlyI	GAGTC	5 cut(s)	82, 289, 541, 878, 3593
MmeI	TCCRAC	4 cut(s)	110, 558, 963, 2875
MreI	CGCCGGCG	1 cut(s)	335
MroNI	GCCGGC	2 cut(s)	53, 335
MroXI	GAANNNNTTC	1 cut(s)	2991
MslI	CAYNNNNRTG	2 cut(s)	2268, 3378
MspA1I	CMGCKG	1 cut(s)	3544
MspI	CCGG	9 cut(s)	54, 145, 319, 336, 354, 725, 919, 991, 3346
MspR9I	CCNGG	6 cut(s)	154, 354, 405, 919, 2186, 3133
MunI	CAATTG	3 cut(s)	1497, 1602, 2122
Mva1269I	GAATGC	4 cut(s)	743, 2536, 2737, 3066
MvaI	CCWGG	4 cut(s)	154, 405, 2186, 3133
MwoI	GCNNNNNNNGC	8 cut(s)	59, 68, 313, 1000, 1256, 1265, 1931, 3227
NaeI	GCCGGC	2 cut(s)	55, 337
NarI	GGCGCC	1 cut(s)	305
NciI	CCSGG	2 cut(s)	354, 919
NdeI	CATATG	4 cut(s)	753, 1522, 3169, 3353
NgoMIV	GCCGGC	2 cut(s)	53, 335
NlaIV	GGNNCC	8 cut(s)	149, 306, 1015, 1016, 1954, 2965, 2982, 3144
NmeAIII	GCCGAG	1 cut(s)	190
NspI	RCATGY	5 cut(s)	1415, 1849, 1915, 3377, 3417
PaeI	GCATGC	1 cut(s)	1415
PaeR7I	CTCGAG	1 cut(s)	529
PagI	TCATGA	3 cut(s)	691, 1447, 3339
PciI	ACATGT	1 cut(s)	1911
PciSI	GCTCTTC	1 cut(s)	1098
PcsI	WCGNNNNNNNCGW	4 cut(s)	11, 180, 219, 2356
PctI	GAATGC	4 cut(s)	743, 2536, 2737, 3066
PdiI	GCCGGC	2 cut(s)	55, 337
PdmI	GAANNNNTTC	1 cut(s)	2991
PfeI	GAWTC	9 cut(s)	16, 124, 139, 1295, 1370, 1685, 2297, 2521, 3358
PflMI	CCANNNNNTGG	2 cut(s)	1199, 2876
PfoI	TCCNGGA	1 cut(s)	2184
Ple19I	CGATCG	1 cut(s)	302
PleI	GAGTC	5 cut(s)	82, 289, 540, 877, 3592
PluTI	GGCGCC	1 cut(s)	308
PmaCI	CACGTG	1 cut(s)	2616
PmlI	CACGTG	1 cut(s)	2616
PpsI	GAGTC	5 cut(s)	82, 289, 540, 877, 3592
Ppu21I	YACGTR	3 cut(s)	1576, 2360, 2616
PscI	ACATGT	1 cut(s)	1911
PshAI	GACNNNNGTC	1 cut(s)	993
PshBI	ATTAAT	1 cut(s)	483
Psp1406I	AACGTT	1 cut(s)	1405
Psp6I	CCWGG	4 cut(s)	152, 403, 2184, 3131
PspCI	CACGTG	1 cut(s)	2616
PspGI	CCWGG	4 cut(s)	152, 403, 2184, 3131
PspN4I	GGNNCC	8 cut(s)	149, 306, 1015, 1016, 1954, 2965, 2982, 3144
PspOMI	GGGCCC	1 cut(s)	1014
PspPI	GGNCC	7 cut(s)	1014, 1015, 1190, 1953, 2593, 2710, 2867
PspXI	VCTCGAGB	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	1891
PvuI	CGATCG	1 cut(s)	302
PvuII	CAGCTG	1 cut(s)	3544
RseI	CAYNNNNRTG	2 cut(s)	2268, 3378
SapI	GCTCTTC	1 cut(s)	1098
Sau96I	GGNCC	7 cut(s)	1014, 1015, 1190, 1953, 2593, 2710, 2867
ScaI	AGTACT	3 cut(s)	2648, 3424, 3506
SchI	GAGTC	5 cut(s)	82, 289, 541, 878, 3593
ScrFI	CCNGG	6 cut(s)	154, 354, 405, 919, 2186, 3133
SexAI	ACCWGGT	1 cut(s)	403
SfaNI	GCATC	6 cut(s)	86, 1198, 1720, 1855, 2191, 3307
SfcI	CTRYAG	1 cut(s)	1309
SfoI	GGCGCC	1 cut(s)	306
Sfr274I	CTCGAG	1 cut(s)	529
SgrAI	CRCCGGYG	1 cut(s)	335
SinI	GGWCC	4 cut(s)	1190, 1953, 2593, 2867
SlaI	CTCGAG	1 cut(s)	529
SmiMI	CAYNNNNRTG	2 cut(s)	2268, 3378
SmlI	CTYRAG	3 cut(s)	529, 1839, 2060
SmoI	CTYRAG	3 cut(s)	529, 1839, 2060
SnaBI	TACGTA	1 cut(s)	2360
SphI	GCATGC	1 cut(s)	1415
SspDI	GGCGCC	1 cut(s)	304
SspI	AATATT	2 cut(s)	496, 1900
SspMI	CTAG	9 cut(s)	275, 621, 908, 1251, 2007, 2162, 2687, 3231, 3440
StyD4I	CCNGG	6 cut(s)	152, 352, 403, 917, 2184, 3131
StyI	CCWWGG	4 cut(s)	620, 1138, 2829, 3579
TaaI	ACNGT	7 cut(s)	385, 1169, 1570, 1636, 2135, 2347, 2657
TaiI	ACGT	8 cut(s)	241, 1408, 1578, 1930, 2222, 2233, 2362, 2618
TaqI	TCGA	8 cut(s)	5, 41, 298, 417, 530, 1388, 1591, 2392
TaqII	GACCGA	1 cut(s)	2172
TatI	WGTACW	6 cut(s)	973, 1598, 2260, 2646, 3422, 3504
TauI	GCSGC	3 cut(s)	53, 74, 77
TfiI	GAWTC	9 cut(s)	16, 124, 139, 1295, 1370, 1685, 2297, 2521, 3358
TscAI	CASTG	9 cut(s)	929, 1138, 1200, 1285, 2140, 2337, 2857, 3394, 3487
TseI	GCWGC	7 cut(s)	266, 1343, 1507, 1733, 2691, 2847, 3417
TspGWI	ACGGA	3 cut(s)	107, 307, 2367
TspRI	CASTG	9 cut(s)	929, 1138, 1200, 1285, 2140, 2337, 2857, 3394, 3487
Van91I	CCANNNNNTGG	2 cut(s)	1199, 2876
VneI	GTGCAC	3 cut(s)	524, 1060, 1473
VpaK11BI	GGWCC	4 cut(s)	1190, 1953, 2593, 2867
VspI	ATTAAT	1 cut(s)	483
XagI	CCTNNNNNAGG	1 cut(s)	1947
XapI	RAATTY	8 cut(s)	412, 700, 892, 947, 1158, 1422, 1528, 3099
XbaI	TCTAGA	1 cut(s)	3439
XceI	RCATGY	5 cut(s)	1415, 1849, 1915, 3377, 3417
XcmI	CCANNNNNNNNNTGG	3 cut(s)	726, 1088, 1423
XhoI	CTCGAG	1 cut(s)	529
XmaJI	CCTAGG	1 cut(s)	620
XmiI	GTMKAC	1 cut(s)	2356
XmnI	GAANNNNTTC	1 cut(s)	2991
XspI	CTAG	9 cut(s)	275, 621, 908, 1251, 2007, 2162, 2687, 3231, 3440
ZrmI	AGTACT	3 cut(s)	2648, 3424, 3506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.