Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005241.1

Orthogroup ID

OG0008094

Physical Location & Seq

Genomic Coordinates Forward (+)

28382 .. 31963

Gene Structure 3582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgctgaaccagcagggcttgtttgatcagaatcaagatcaggctcctatacagatgggtttcttttcctacccaccaaataacttgaccttctcttcgttgggatgtcaacaatccctcaaagccttgagttccttaccttcttcacttggttctgatgatcaccatgcaccgtcgaccaatctctctgaaaccctaatcccatctctcaatattcctctaaagcatagagaagctcatatcacttctgattttggaggatcccaactcctttctttgcaaagatcgagtgcaaatctctggtcatggggggatcaggtgagtgaatgcctgagcagcaagagatcatcaggcgatattcatgatcatcatcatgtaggattaggtgtttcagcaatgaagatgaagaagataaaggcgattaggaggaaagtgagggagcccaggttttgcttcaagacaatgagcgaagttgatgtgcttgatgatggttacaagtggaggaagtacggacagaaagtggtaaagaacacacagcatcccaggagctattatcgttgcaccatggacaactgccgcgtaaagaaacgtgtagagagattagctgaggacccgagaatggtgattacaacatacgaagggagacacgtacattctccatctcatgatctcgaagattcccaatctccatctcacctaaataacttcttttggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043455 GO:0043565 GO:0044212 GO:0045595 GO:0045597 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901141 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904368 GO:1904369 GO:1990837 GO:2000112 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

238

Amino Acids

27.16

Weight (kDa)

9.08

Isoelectric Point (pI)

55.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	162 - 218	8.3e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39410
fragaria_vesca	FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082
malus_domestica	MD01G1013500.v1.1 MD15G1337100.v1.1
prunus_persica	Prupe.6G168200_v2.0.a1
pyrus_communis	pycom01g04550 pycom15g28900
rosa_chinensis	RchiOBHm_Chr2g0117781
rosa_laevigata	RLG00000018373
rosa_multiflora	Rmu_sc0005241.1_g000008
rosa_roxburghii	Rroxscaffold_2G00126220
rosa_rugosa	Rorug02G0214100
rosa_samantha	Rh2AG270100 Rh2BG281600 Rh2CG269900 Rh2DG278000 Rh2DG295800
rosa_wichuraiana	Rw2G021340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	176
AccII	CGCG	1 cut(s)	579
AciI	CCGC	1 cut(s)	577
AclWI	GGATC	3 cut(s)	255, 268, 321
AfaI	GTAC	2 cut(s)	509, 651
AfiI	CCNNNNNNNGG	1 cut(s)	619
AflIII	ACRYGT	2 cut(s)	589, 646
AgsI	TTSAA	1 cut(s)	457
AjnI	CCWGG	2 cut(s)	443, 542
AluBI	AGCT	3 cut(s)	236, 549, 605
AluI	AGCT	3 cut(s)	236, 549, 605
Alw26I	GTCTC	1 cut(s)	637
AlwI	GGATC	3 cut(s)	255, 268, 321
Ama87I	CYCGRG	1 cut(s)	613
ApeKI	GCWGC	1 cut(s)	336
ArsI	GACNNNNNNTTYG	4 cut(s)	79, 111, 287, 319
AspS9I	GGNCC	1 cut(s)	610
AsuHPI	GGTGA	4 cut(s)	155, 331, 634, 686
AvaI	CYCGRG	1 cut(s)	613
AvaII	GGWCC	1 cut(s)	610
BamHI	GGATCC	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	444
BbvCI	CCTCAGC	1 cut(s)	606
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	5 cut(s)	49, 211, 482, 667, 697
BciT130I	CCWGG	2 cut(s)	445, 544
BclI	TGATCA	3 cut(s)	25, 160, 364
BcoDI	GTCTC	1 cut(s)	637
BisI	GCNGC	2 cut(s)	337, 577
BlsI	GCNGC	2 cut(s)	338, 578
Bme1390I	CCNGG	2 cut(s)	445, 544
Bme18I	GGWCC	1 cut(s)	610
BmeT110I	CYCGRG	1 cut(s)	613
BmgT120I	GGNCC	1 cut(s)	610
BmiI	GGNNCC	4 cut(s)	45, 262, 441, 612
BmrFI	CCNGG	2 cut(s)	445, 544
BmsI	GCATC	1 cut(s)	547
Bpu10I	CCTNAGC	2 cut(s)	332, 606
BpuEI	CTTGAG	1 cut(s)	148
BsaAI	YACGTR	1 cut(s)	649
BsaBI	GATNNNNATC	2 cut(s)	30, 369
BsaJI	CCNNGG	3 cut(s)	443, 542, 564
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bsc4I	CCNNNNNNNGG	1 cut(s)	619
Bse3DI	GCAATG	1 cut(s)	402
Bse8I	GATNNNNATC	2 cut(s)	30, 369
BseBI	CCWGG	2 cut(s)	445, 544
BseDI	CCNNGG	3 cut(s)	443, 542, 564
BseGI	GGATG	2 cut(s)	110, 538
BseJI	GATNNNNATC	2 cut(s)	30, 369
BseLI	CCNNNNNNNGG	1 cut(s)	619
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	2 cut(s)	323, 597
BseXI	GCAGC	1 cut(s)	348
Bsh1236I	CGCG	1 cut(s)	579
BsiHKCI	CYCGRG	1 cut(s)	613
BslI	CCNNNNNNNGG	1 cut(s)	619
BsmAI	GTCTC	1 cut(s)	637
BsmI	GAATGC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	613
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	9 cut(s)	25, 37, 160, 260, 284, 313, 344, 364, 667
Bsp19I	CCATGG	1 cut(s)	564
BspACI	CCGC	1 cut(s)	577
BspCNI	CTCAG	2 cut(s)	324, 598
BspFNI	CGCG	1 cut(s)	579
BspHI	TCATGA	2 cut(s)	361, 664
BspLI	GGNNCC	4 cut(s)	45, 262, 441, 612
BspPI	GGATC	3 cut(s)	255, 268, 321
BsrDI	GCAATG	1 cut(s)	402
BssECI	CCNNGG	3 cut(s)	443, 542, 564
BssMI	GATC	9 cut(s)	25, 37, 160, 260, 284, 313, 344, 364, 667
BssT1I	CCWWGG	1 cut(s)	564
Bst2UI	CCWGG	2 cut(s)	445, 544
Bst4CI	ACNGT	1 cut(s)	174
Bst6I	CTCTTC	1 cut(s)	100
BstBAI	YACGTR	1 cut(s)	649
BstDEI	CTNAG	2 cut(s)	332, 606
BstDSI	CCRYGG	1 cut(s)	564
BstF5I	GGATG	2 cut(s)	110, 538
BstFNI	CGCG	1 cut(s)	579
BstKTI	GATC	9 cut(s)	28, 40, 163, 263, 287, 316, 347, 367, 670
BstMAI	GTCTC	1 cut(s)	637
BstMBI	GATC	9 cut(s)	25, 37, 160, 260, 284, 313, 344, 364, 667
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 336
BstNI	CCWGG	2 cut(s)	445, 544
BstSCI	CCNGG	2 cut(s)	443, 542
BstUI	CGCG	1 cut(s)	579
BstV1I	GCAGC	1 cut(s)	348
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BtgI	CCRYGG	1 cut(s)	564
BtsCI	GGATG	2 cut(s)	110, 538
CciI	TCATGA	2 cut(s)	361, 664
Cfr13I	GGNCC	1 cut(s)	610
Csp6I	GTAC	2 cut(s)	508, 650
CviAII	CATG	6 cut(s)	167, 306, 362, 374, 565, 665
CviJI	RGCY	7 cut(s)	18, 44, 125, 236, 442, 549, 605
CviKI_1	RGCY	7 cut(s)	18, 44, 125, 236, 442, 549, 605
CviQI	GTAC	2 cut(s)	508, 650
DdeI	CTNAG	2 cut(s)	332, 606
DpnI	GATC	9 cut(s)	27, 39, 162, 262, 286, 315, 346, 366, 669
DpnII	GATC	9 cut(s)	25, 37, 160, 260, 284, 313, 344, 364, 667
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	564
Eco24I	GRGCYC	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	610
Eco88I	CYCGRG	1 cut(s)	613
EcoO109I	RGGNCCY	1 cut(s)	610
EcoRII	CCWGG	2 cut(s)	443, 542
EcoT14I	CCWWGG	1 cut(s)	564
EcoT38I	GRGCYC	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	6 cut(s)	170, 309, 365, 377, 568, 668
FatI	CATG	6 cut(s)	166, 305, 361, 373, 564, 664
FbaI	TGATCA	3 cut(s)	25, 160, 364
FblI	GTMKAC	1 cut(s)	176
Fnu4HI	GCNGC	2 cut(s)	337, 577
FokI	GGATG	2 cut(s)	117, 525
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	2 cut(s)	337, 577
GluI	GCNGC	2 cut(s)	337, 577
Hin1II	CATG	6 cut(s)	170, 309, 365, 377, 568, 668
HincII	GTYRAC	2 cut(s)	110, 177
HindII	GTYRAC	2 cut(s)	110, 177
HinfI	GANTC	2 cut(s)	31, 677
HphI	GGTGA	4 cut(s)	155, 331, 634, 686
Hpy166II	GTNNAC	2 cut(s)	110, 177
Hpy188I	TCNGA	4 cut(s)	30, 157, 190, 250
Hpy188III	TCNNGA	5 cut(s)	35, 362, 457, 665, 671
Hpy8I	GTNNAC	2 cut(s)	110, 177
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	3 cut(s)	100, 150, 632
HpyCH4III	ACNGT	1 cut(s)	174
HpyCH4IV	ACGT	2 cut(s)	589, 648
HpyCH4V	TGCA	4 cut(s)	170, 280, 293, 561
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 336
HpyF3I	CTNAG	2 cut(s)	332, 606
HpySE526I	ACGT	2 cut(s)	589, 648
Hsp92II	CATG	6 cut(s)	170, 309, 365, 377, 568, 668
Ksp22I	TGATCA	3 cut(s)	25, 160, 364
Kzo9I	GATC	9 cut(s)	25, 37, 160, 260, 284, 313, 344, 364, 667
LmnI	GCTCC	3 cut(s)	49, 439, 546
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	1 cut(s)	547
MaeII	ACGT	2 cut(s)	589, 648
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	9 cut(s)	27, 39, 162, 262, 286, 315, 346, 366, 669
MboI	GATC	9 cut(s)	25, 37, 160, 260, 284, 313, 344, 364, 667
MboII	GAAGA	6 cut(s)	87, 135, 412, 418, 421, 686
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	444
MnlI	CCTC	7 cut(s)	128, 228, 251, 420, 429, 495, 601
MslI	CAYNNNNRTG	1 cut(s)	372
MspR9I	CCNGG	2 cut(s)	445, 544
Mva1269I	GAATGC	1 cut(s)	332
MvaI	CCWGG	2 cut(s)	445, 544
MvnI	CGCG	1 cut(s)	579
MwoI	GCNNNNNNNGC	2 cut(s)	10, 336
NcoI	CCATGG	1 cut(s)	564
NdeII	GATC	9 cut(s)	25, 37, 160, 260, 284, 313, 344, 364, 667
NlaIII	CATG	6 cut(s)	170, 309, 365, 377, 568, 668
NlaIV	GGNNCC	4 cut(s)	45, 262, 441, 612
PagI	TCATGA	2 cut(s)	361, 664
PctI	GAATGC	1 cut(s)	332
PfeI	GAWTC	2 cut(s)	31, 677
PkrI	GCNGC	2 cut(s)	338, 578
Ppu21I	YACGTR	1 cut(s)	649
PpuMI	RGGWCCY	1 cut(s)	610
Psp5II	RGGWCCY	1 cut(s)	610
Psp6I	CCWGG	2 cut(s)	443, 542
PspGI	CCWGG	2 cut(s)	443, 542
PspN4I	GGNNCC	4 cut(s)	45, 262, 441, 612
PspPI	GGNCC	1 cut(s)	610
PspPPI	RGGWCCY	1 cut(s)	610
PsuI	RGATCY	1 cut(s)	260
RsaI	GTAC	2 cut(s)	509, 651
RsaNI	GTAC	2 cut(s)	508, 650
RseI	CAYNNNNRTG	1 cut(s)	372
SalI	GTCGAC	1 cut(s)	175
SatI	GCNGC	2 cut(s)	337, 577
Sau3AI	GATC	9 cut(s)	25, 37, 160, 260, 284, 313, 344, 364, 667
Sau96I	GGNCC	1 cut(s)	610
ScrFI	CCNGG	2 cut(s)	445, 544
SduI	GDGCHC	1 cut(s)	444
SfaNI	GCATC	1 cut(s)	547
SinI	GGWCC	1 cut(s)	610
SmiMI	CAYNNNNRTG	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
SsiI	CCGC	1 cut(s)	577
SspI	AATATT	1 cut(s)	214
StyD4I	CCNGG	2 cut(s)	443, 542
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	1 cut(s)	174
TaiI	ACGT	2 cut(s)	592, 651
TaqI	TCGA	3 cut(s)	176, 287, 672
TauI	GCSGC	1 cut(s)	579
TfiI	GAWTC	2 cut(s)	31, 677
TseI	GCWGC	1 cut(s)	336
TspDTI	ATGAA	3 cut(s)	350, 413, 419
TspGWI	ACGGA	1 cut(s)	525
VpaK11BI	GGWCC	1 cut(s)	610
XmiI	GTMKAC	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.