Rmu_sc0005523.1_g000005

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005523.1
OG0016143
Physical Location & Seq
Reverse (-)
18523 .. 19122
600 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 501 bp
atgatccaagggtgtaaaatggcacaaattgaccaaacacctcgaataaagctcgaatactgcgtctacatcgcaagtgtgttccgaaagtattccaaatcaatagatgcgttccctcccggtttccggttccacccttcggaacagcagctcctctcctactatctcccaaacaagaaagccaacccggccatactcggcggctacattactacgatcagagagctgtcagacttacgagggcgcgaaccgtccgagttacagaactggagttgctattcgtacggttacaaagggaggaagaggcactggtacttctatacggctggggtttcggcggaggagaagaataccaagcagggatgttggaagaggaaaggtaaggttagggacgtgttcagccgccaaggggttgttttgggcgccaagacaagctttgtctattactatgggtcgcccgacacagcctcacctgtaagaccttattggactagacgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03018 map03013 map03015 map03018
Pfam Domains
Protein Families
PABP

Protein Analysis

166

Amino Acids

19.33

Weight (kDa)

9.81

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 39 - 153 8.4e-18 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19350
fragaria_vesca FvH4_2g34070
rosa_chinensis RchiOBHm_Chr6g0308281
rosa_laevigata RLG00000010651
rosa_multiflora Rmu_sc0005523.1_g000005 Rmu_sc0013917.1_g000002 Rmu_ssc0000355.1_g000010 Rmu_ssc0000355.1_g000012
rosa_roxburghii Rroxscaffold_7G00160290
rosa_samantha Rh6AG474800 Rh6BG485400 Rh6CG490500 Rh6DG476900 Rh6DG477100
rosa_wichuraiana Rw6G041410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 422
AccI GTMKAC 1 cut(s) 66
AccII CGCG 1 cut(s) 246
AciI CCGC 3 cut(s) 201, 338, 403
AcoI YGGCCR 1 cut(s) 189
AcyI GRCGYC 1 cut(s) 423
AfaI GTAC 2 cut(s) 284, 314
AfiI CCNNNNNNNGG 3 cut(s) 126, 139, 409
AflIII ACRYGT 1 cut(s) 393
AjiI CACGTC 1 cut(s) 394
AloI GAACNNNNNNTCC 2 cut(s) 135, 167
AluBI AGCT 4 cut(s) 52, 151, 226, 435
AluI AGCT 4 cut(s) 52, 151, 226, 435
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 148
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
Asp700I GAANNNNTTC 1 cut(s) 91
AspLEI GCGC 2 cut(s) 246, 425
AsuC2I CCSGG 2 cut(s) 120, 188
AsuHPI GGTGA 1 cut(s) 462
BanI GGYRCC 1 cut(s) 422
BbvI GCAGC 1 cut(s) 160
BceAI ACGGC 1 cut(s) 339
BcnI CCSGG 2 cut(s) 120, 188
BfaI CTAG 1 cut(s) 492
BfoI RGCGCY 1 cut(s) 426
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 3 cut(s) 149, 202, 403
BlsI GCNGC 3 cut(s) 150, 203, 404
Bme1390I CCNGG 2 cut(s) 120, 188
BmgBI CACGTC 1 cut(s) 394
BmiI GGNNCC 2 cut(s) 131, 424
BmrFI CCNGG 2 cut(s) 120, 188
BmsI GCATC 1 cut(s) 97
BpmI CTGGAG 1 cut(s) 289
BpuMI CCSGG 2 cut(s) 120, 188
BsaHI GRCGYC 1 cut(s) 423
BsaJI CCNNGG 2 cut(s) 7, 406
BsaWI WCCGGW 1 cut(s) 126
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 3 cut(s) 126, 139, 409
Bse1I ACTGG 2 cut(s) 272, 314
BseDI CCNNGG 2 cut(s) 7, 406
BseGI GGATG 1 cut(s) 368
BseLI CCNNNNNNNGG 3 cut(s) 126, 139, 409
BseNI ACTGG 2 cut(s) 272, 314
BseRI GAGGAG 2 cut(s) 143, 356
BseXI GCAGC 1 cut(s) 160
BseYI CCCAGC 1 cut(s) 326
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 1 cut(s) 191
BshNI GGYRCC 1 cut(s) 422
BsiSI CCGG 3 cut(s) 120, 127, 188
BsiWI CGTACG 1 cut(s) 282
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 3 cut(s) 126, 139, 409
BsmFI GGGAC 1 cut(s) 404
BsnI GGCC 1 cut(s) 191
Bsp143I GATC 2 cut(s) 3, 216
BspACI CCGC 3 cut(s) 201, 338, 403
BspANI GGCC 1 cut(s) 191
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 131, 424
BspT107I GGYRCC 1 cut(s) 422
BsrI ACTGG 2 cut(s) 272, 314
BssECI CCNNGG 2 cut(s) 7, 406
BssMI GATC 2 cut(s) 3, 216
BssNI GRCGYC 1 cut(s) 423
BssT1I CCWWGG 2 cut(s) 7, 406
Bst4CI ACNGT 2 cut(s) 252, 287
Bst6I CTCTTC 2 cut(s) 296, 365
BstACI GRCGYC 1 cut(s) 423
BstF5I GGATG 1 cut(s) 368
BstFNI CGCG 1 cut(s) 246
BstH2I RGCGCY 1 cut(s) 426
BstHHI GCGC 2 cut(s) 246, 425
BstKTI GATC 2 cut(s) 6, 219
BstMBI GATC 2 cut(s) 3, 216
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstSCI CCNGG 2 cut(s) 118, 186
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 160
BsuRI GGCC 1 cut(s) 191
BtgZI GCGATG 1 cut(s) 55
BtrI CACGTC 1 cut(s) 394
BtsCI GGATG 1 cut(s) 368
BtsIMutI CAGTG 1 cut(s) 307
CfoI GCGC 2 cut(s) 246, 425
CseI GACGC 1 cut(s) 52
Csp6I GTAC 2 cut(s) 283, 313
CviQI GTAC 2 cut(s) 283, 313
DinI GGCGCC 1 cut(s) 424
DpnI GATC 2 cut(s) 5, 218
DpnII GATC 2 cut(s) 3, 216
EaeI YGGCCR 1 cut(s) 189
Eam1104I CTCTTC 2 cut(s) 296, 365
EarI CTCTTC 2 cut(s) 296, 365
EciI GGCGGA 1 cut(s) 353
Eco130I CCWWGG 2 cut(s) 7, 406
EcoT14I CCWWGG 2 cut(s) 7, 406
EgeI GGCGCC 1 cut(s) 424
EheI GGCGCC 1 cut(s) 424
ErhI CCWWGG 2 cut(s) 7, 406
FaiI YATR 3 cut(s) 194, 321, 450
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FaqI GGGAC 1 cut(s) 404
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 3 cut(s) 149, 202, 403
FokI GGATG 1 cut(s) 375
Fsp4HI GCNGC 3 cut(s) 149, 202, 403
FspBI CTAG 1 cut(s) 492
GlaI GCGC 2 cut(s) 245, 424
GluI GCNGC 3 cut(s) 149, 202, 403
GsaI CCCAGC 1 cut(s) 330
GsuI CTGGAG 1 cut(s) 289
HaeII RGCGCY 1 cut(s) 426
HaeIII GGCC 1 cut(s) 191
HapII CCGG 3 cut(s) 120, 127, 188
HgaI GACGC 1 cut(s) 52
HhaI GCGC 2 cut(s) 246, 425
Hin1I GRCGYC 1 cut(s) 423
Hin6I GCGC 2 cut(s) 244, 423
HinP1I GCGC 2 cut(s) 244, 423
HindIII AAGCTT 1 cut(s) 433
HpaII CCGG 3 cut(s) 120, 127, 188
HphI GGTGA 1 cut(s) 462
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 5 cut(s) 86, 142, 221, 232, 256
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 147
HpyCH4III ACNGT 2 cut(s) 252, 287
HpyCH4IV ACGT 2 cut(s) 393, 496
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpySE526I ACGT 2 cut(s) 393, 496
Hsp92I GRCGYC 1 cut(s) 423
HspAI GCGC 2 cut(s) 244, 423
KasI GGCGCC 1 cut(s) 422
Kzo9I GATC 2 cut(s) 3, 216
LmnI GCTCC 1 cut(s) 156
LpnPI CCDG 8 cut(s) 133, 140, 201, 253, 295, 312, 344, 486
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 492
MaeII ACGT 2 cut(s) 393, 496
MaeIII GTNAC 2 cut(s) 258, 287
MalI GATC 2 cut(s) 5, 218
MboI GATC 2 cut(s) 3, 216
MboII GAAGA 3 cut(s) 313, 358, 382
MluCI AATT 1 cut(s) 27
Mly113I GGCGCC 1 cut(s) 423
MmeI TCCRAC 1 cut(s) 347
MnlI CCTC 9 cut(s) 51, 126, 164, 233, 291, 297, 334, 366, 478
MroXI GAANNNNTTC 1 cut(s) 91
MspI CCGG 3 cut(s) 120, 127, 188
MspR9I CCNGG 2 cut(s) 120, 188
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 188
NarI GGCGCC 1 cut(s) 423
NciI CCSGG 2 cut(s) 120, 188
NdeII GATC 2 cut(s) 3, 216
NlaIV GGNNCC 2 cut(s) 131, 424
NmeAIII GCCGAG 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 91
Pfl23II CGTACG 1 cut(s) 282
PkrI GCNGC 3 cut(s) 150, 203, 404
PluTI GGCGCC 1 cut(s) 426
PspFI CCCAGC 1 cut(s) 326
PspLI CGTACG 1 cut(s) 282
PspN4I GGNNCC 2 cut(s) 131, 424
RsaI GTAC 2 cut(s) 284, 314
RsaNI GTAC 2 cut(s) 283, 313
SatI GCNGC 3 cut(s) 149, 202, 403
Sau3AI GATC 2 cut(s) 3, 216
ScrFI CCNGG 2 cut(s) 120, 188
SfaNI GCATC 1 cut(s) 97
SfoI GGCGCC 1 cut(s) 424
Sse9I AATT 1 cut(s) 27
SsiI CCGC 3 cut(s) 201, 338, 403
SspDI GGCGCC 1 cut(s) 422
SspMI CTAG 1 cut(s) 492
StyD4I CCNGG 2 cut(s) 118, 186
StyI CCWWGG 2 cut(s) 7, 406
TaaI ACNGT 2 cut(s) 252, 287
TaiI ACGT 2 cut(s) 396, 499
TaqI TCGA 2 cut(s) 43, 54
TasI AATT 1 cut(s) 27
TauI GCSGC 2 cut(s) 204, 405
TscAI CASTG 1 cut(s) 314
TseI GCWGC 1 cut(s) 148
TspRI CASTG 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 66
XmnI GAANNNNTTC 1 cut(s) 91
XspI CTAG 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.