Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005621.1

Orthogroup ID

OG0013919

Physical Location & Seq

Genomic Coordinates Forward (+)

84043 .. 85167

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

atgatcctcgatttttctttcctcttgacagtcgctgagatttcgagcaaaattggcataaactatgggcaggtagggaacaatttgccatctccaagccggtccatcgagcacatcaaatccatgaaaatagggcgtgtgaagctctatgatgccaacccggaaattttaagactcctatctggaaccaatatctcagtctccatcatggtcccaaacaatgaaatcactggcattgcctcagaccaatccaaagcagatgaatgggtcagaaacaatgtcctcccctactaccccaaaaccatgatccggtacctcctcgtaggcaatgaaatcctcagctatttctcggaccaagatcgccaaatatggcacgatctagtcccggccatgactaaaatcaagtattctctcaaatccaaaaatatcactaacatcaaaataggtaccccattagcaatggacgtggttcaaacgagtttcccaccatcaagtagctctttccgatccgatatctcggaaacagtcatggttcccttgctcagattcttgaaccggaccaagtcatttttcttcattgatgtgtacccttttttcccatggtcctcaaaccccaaagacattagcctagactatgcattattgaaaaacattagtaacaacagtactctactgtatactgacccaggaagtggtttggtctataccaatcttctggaccaaatgcttgactccttgatcttcgccatgaccaagctcggctacccaaacatccggcttttgatagcggagactgggtggccaaactccagcagtgagcaaaaccaaccgggggctaatgtacacgatgccgccacatataaccgaaatttggtacaaaaaattgttactaagccaacaattgggacaccagcgaggcctggtgtggtgataccaaccttcatatttgcattgtatgatgaaaatcagaagggtgggcctggaacagagaggcactggggattgttgtacgctgatggaactccggtttatgatattgacttgacggggaagcgatcggcaaatgactacgaaccattgccggagaagaggcacttcataaagggaattcattacgacgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

374

Amino Acids

42.0

Weight (kDa)

7.03

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	18 - 347	6.7e-99	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23770 AT4G14080
fragaria_vesca	FvH4_4g13120
malus_domestica	MD04G1019000.v1.1
prunus_persica	Prupe.1G168300_v2.0.a1
pyrus_communis	pycom04g01520
rosa_chinensis	RchiOBHm_Chr4g0412901
rosa_laevigata	RLG00000008249
rosa_multiflora	Rmu_sc0005621.1_g000022 Rmu_sc0012279.1_g000004
rosa_roxburghii	Rroxscaffold_5G00357140
rosa_rugosa	Rorug04G0117400
rosa_samantha	Rh4AG176300 Rh4BG176700 Rh4CG187300 Rh4DG173600
rosa_wichuraiana	Rw4G014800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	61
Acc65I	GGTACC	2 cut(s)	312, 446
AccB1I	GGYRCC	2 cut(s)	312, 446
AccB7I	CCANNNNNTGG	2 cut(s)	692, 902
AccI	GTMKAC	1 cut(s)	677
AciI	CCGC	2 cut(s)	788, 852
AclWI	GGATC	2 cut(s)	301, 501
AcoI	YGGCCR	2 cut(s)	387, 800
AcsI	RAATTY	3 cut(s)	165, 868, 1107
AfaI	GTAC	7 cut(s)	314, 448, 587, 667, 843, 876, 1010
AfiI	CCNNNNNNNGG	5 cut(s)	309, 692, 832, 871, 902
AgsI	TTSAA	3 cut(s)	473, 553, 646
AjiI	CACGTC	1 cut(s)	466
AjnI	CCWGG	3 cut(s)	685, 919, 979
AjuI	GAANNNNNNNTTGG	2 cut(s)	554, 586
AluBI	AGCT	4 cut(s)	145, 342, 498, 757
AluI	AGCT	4 cut(s)	145, 342, 498, 757
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	2 cut(s)	205, 785
AlwI	GGATC	2 cut(s)	301, 501
AlwNI	CAGNNNCTG	1 cut(s)	35
AoxI	GGCC	4 cut(s)	387, 800, 917, 977
ApoI	RAATTY	3 cut(s)	165, 868, 1107
Asp718I	GGTACC	2 cut(s)	312, 446
AspS9I	GGNCC	7 cut(s)	102, 211, 352, 558, 603, 718, 977
AsuC2I	CCSGG	3 cut(s)	161, 386, 831
AsuHPI	GGTGA	1 cut(s)	940
AvaII	GGWCC	6 cut(s)	102, 211, 352, 558, 603, 718
BalI	TGGCCA	1 cut(s)	802
BanI	GGYRCC	2 cut(s)	312, 446
Bbv12I	GWGCWC	1 cut(s)	114
BbvCI	CCTCAGC	1 cut(s)	338
BccI	CCATC	5 cut(s)	97, 113, 212, 496, 1010
BciT130I	CCWGG	3 cut(s)	687, 921, 981
BcnI	CCSGG	3 cut(s)	161, 386, 831
BcoDI	GTCTC	2 cut(s)	205, 785
BfaI	CTAG	2 cut(s)	380, 629
BfuAI	ACCTGC	1 cut(s)	61
BisI	GCNGC	1 cut(s)	852
BlsI	GCNGC	1 cut(s)	853
BmcAI	AGTACT	1 cut(s)	667
Bme1390I	CCNGG	6 cut(s)	161, 386, 687, 831, 921, 981
Bme18I	GGWCC	6 cut(s)	102, 211, 352, 558, 603, 718
BmgBI	CACGTC	1 cut(s)	466
BmgT120I	GGNCC	7 cut(s)	102, 211, 352, 558, 603, 718, 977
BmiI	GGNNCC	5 cut(s)	187, 213, 314, 448, 534
BmrFI	CCNGG	6 cut(s)	161, 386, 687, 831, 921, 981
BmrI	ACTGGG	2 cut(s)	804, 1006
BmsI	GCATC	2 cut(s)	142, 838
BmuI	ACTGGG	2 cut(s)	804, 1006
BpmI	CTGGAG	1 cut(s)	793
Bpu10I	CCTNAGC	1 cut(s)	338
BpuMI	CCSGG	3 cut(s)	161, 386, 831
BsaBI	GATNNNNATC	1 cut(s)	963
BsaJI	CCNNGG	3 cut(s)	599, 685, 830
BsaWI	WCCGGW	3 cut(s)	309, 555, 1024
BsaXI	ACNNNNNCTCC	2 cut(s)	782, 812
Bsc4I	CCNNNNNNNGG	5 cut(s)	309, 692, 832, 871, 902
Bse118I	RCCGGY	1 cut(s)	99
Bse1I	ACTGG	3 cut(s)	235, 799, 1001
Bse3DI	GCAATG	4 cut(s)	234, 334, 465, 1076
Bse8I	GATNNNNATC	1 cut(s)	963
BseBI	CCWGG	3 cut(s)	687, 921, 981
BseDI	CCNNGG	3 cut(s)	599, 685, 830
BseGI	GGATG	1 cut(s)	771
BseJI	GATNNNNATC	1 cut(s)	963
BseLI	CCNNNNNNNGG	5 cut(s)	309, 692, 832, 871, 902
BseMI	GCAATG	4 cut(s)	234, 334, 465, 1076
BseMII	CTCAG	5 cut(s)	27, 210, 255, 352, 556
BseNI	ACTGG	3 cut(s)	235, 799, 1001
BseRI	GAGGAG	1 cut(s)	308
Bsh1285I	CGRYCG	1 cut(s)	1058
BshFI	GGCC	4 cut(s)	389, 802, 919, 979
BshNI	GGYRCC	2 cut(s)	312, 446
BsiEI	CGRYCG	1 cut(s)	1058
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	9 cut(s)	100, 161, 310, 386, 556, 775, 830, 1025, 1082
BslFI	GGGAC	3 cut(s)	197, 368, 919
BslI	CCNNNNNNNGG	5 cut(s)	309, 692, 832, 871, 902
BsmAI	GTCTC	2 cut(s)	205, 785
BsmFI	GGGAC	3 cut(s)	197, 368, 919
BsnI	GGCC	4 cut(s)	389, 802, 919, 979
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp1407I	TGTACA	1 cut(s)	841
Bsp143I	GATC	7 cut(s)	3, 306, 358, 376, 506, 738, 1055
Bsp19I	CCATGG	1 cut(s)	599
BspACI	CCGC	2 cut(s)	788, 852
BspANI	GGCC	4 cut(s)	389, 802, 919, 979
BspCNI	CTCAG	5 cut(s)	28, 209, 254, 351, 555
BspLI	GGNNCC	5 cut(s)	187, 213, 314, 448, 534
BspMI	ACCTGC	1 cut(s)	61
BspPI	GGATC	2 cut(s)	301, 501
BspT107I	GGYRCC	2 cut(s)	312, 446
BsrDI	GCAATG	4 cut(s)	234, 334, 465, 1076
BsrFI	RCCGGY	1 cut(s)	99
BsrGI	TGTACA	1 cut(s)	841
BsrI	ACTGG	3 cut(s)	235, 799, 1001
BssAI	RCCGGY	1 cut(s)	99
BssECI	CCNNGG	3 cut(s)	599, 685, 830
BssMI	GATC	7 cut(s)	3, 306, 358, 376, 506, 738, 1055
BssNAI	GTATAC	1 cut(s)	678
BssT1I	CCWWGG	1 cut(s)	599
Bst1107I	GTATAC	1 cut(s)	678
Bst2UI	CCWGG	3 cut(s)	687, 921, 981
Bst4CI	ACNGT	4 cut(s)	31, 526, 665, 675
Bst6I	CTCTTC	1 cut(s)	1082
BstAUI	TGTACA	1 cut(s)	841
BstDEI	CTNAG	6 cut(s)	36, 196, 241, 338, 542, 891
BstDSI	CCRYGG	1 cut(s)	599
BstF5I	GGATG	1 cut(s)	771
BstKTI	GATC	7 cut(s)	6, 309, 361, 379, 509, 741, 1058
BstMAI	GTCTC	2 cut(s)	205, 785
BstMBI	GATC	7 cut(s)	3, 306, 358, 376, 506, 738, 1055
BstMCI	CGRYCG	1 cut(s)	1058
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 142
BstNI	CCWGG	3 cut(s)	687, 921, 981
BstSCI	CCNGG	6 cut(s)	159, 384, 685, 829, 919, 979
BstXI	CCANNNNNNTGG	1 cut(s)	715
BstZ17I	GTATAC	1 cut(s)	678
BsuRI	GGCC	4 cut(s)	389, 802, 919, 979
BtgI	CCRYGG	1 cut(s)	599
BtrI	CACGTC	1 cut(s)	466
BtsCI	GGATG	1 cut(s)	771
BtsI	GCAGTG	1 cut(s)	820
BtsIMutI	CAGTG	3 cut(s)	228, 820, 994
BveI	ACCTGC	1 cut(s)	61
CaiI	CAGNNNCTG	1 cut(s)	35
Cfr10I	RCCGGY	1 cut(s)	99
Cfr13I	GGNCC	7 cut(s)	102, 211, 352, 558, 603, 718, 977
Csp6I	GTAC	7 cut(s)	313, 447, 586, 666, 842, 875, 1009
CspCI	CAANNNNNGTGG	2 cut(s)	447, 482
CviAII	CATG	7 cut(s)	124, 208, 304, 391, 529, 600, 748
CviQI	GTAC	7 cut(s)	313, 447, 586, 666, 842, 875, 1009
DdeI	CTNAG	6 cut(s)	36, 196, 241, 338, 542, 891
DpnI	GATC	7 cut(s)	5, 308, 360, 378, 508, 740, 1057
DpnII	GATC	7 cut(s)	3, 306, 358, 376, 506, 738, 1055
EaeI	YGGCCR	2 cut(s)	387, 800
Eam1104I	CTCTTC	1 cut(s)	1082
EarI	CTCTTC	1 cut(s)	1082
Eco130I	CCWWGG	1 cut(s)	599
Eco147I	AGGCCT	1 cut(s)	919
Eco32I	GATATC	1 cut(s)	514
Eco47I	GGWCC	6 cut(s)	102, 211, 352, 558, 603, 718
EcoRI	GAATTC	1 cut(s)	1107
EcoRII	CCWGG	3 cut(s)	685, 919, 979
EcoRV	GATATC	1 cut(s)	514
EcoT14I	CCWWGG	1 cut(s)	599
EcoT22I	ATGCAT	1 cut(s)	640
ErhI	CCWWGG	1 cut(s)	599
FaeI	CATG	7 cut(s)	127, 211, 307, 394, 532, 603, 751
FalI	AAGNNNNNCTT	4 cut(s)	484, 516, 1079, 1111
FaqI	GGGAC	3 cut(s)	197, 368, 919
FatI	CATG	7 cut(s)	123, 207, 303, 390, 528, 599, 747
FblI	GTMKAC	1 cut(s)	677
Fnu4HI	GCNGC	1 cut(s)	852
FokI	GGATG	1 cut(s)	758
Fsp4HI	GCNGC	1 cut(s)	852
FspBI	CTAG	2 cut(s)	380, 629
GluI	GCNGC	1 cut(s)	852
GsuI	CTGGAG	1 cut(s)	793
HaeIII	GGCC	4 cut(s)	389, 802, 919, 979
HapII	CCGG	9 cut(s)	100, 161, 310, 386, 556, 775, 830, 1025, 1082
Hin1II	CATG	7 cut(s)	127, 211, 307, 394, 532, 603, 751
HinfI	GANTC	3 cut(s)	174, 546, 731
HpaII	CCGG	9 cut(s)	100, 161, 310, 386, 556, 775, 830, 1025, 1082
HphI	GGTGA	1 cut(s)	940
Hpy166II	GTNNAC	3 cut(s)	586, 678, 844
Hpy188I	TCNGA	8 cut(s)	244, 272, 352, 506, 511, 520, 545, 969
Hpy188III	TCNNGA	4 cut(s)	25, 183, 550, 716
Hpy8I	GTNNAC	3 cut(s)	586, 678, 844
Hpy99I	CGWCG	1 cut(s)	1121
HpyAV	CCTTC	2 cut(s)	949, 964
HpyCH4III	ACNGT	4 cut(s)	31, 526, 665, 675
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	2 cut(s)	638, 950
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 142
HpyF3I	CTNAG	6 cut(s)	36, 196, 241, 338, 542, 891
HpySE526I	ACGT	1 cut(s)	465
Hsp92II	CATG	7 cut(s)	127, 211, 307, 394, 532, 603, 751
KpnI	GGTACC	2 cut(s)	316, 450
Kzo9I	GATC	7 cut(s)	3, 306, 358, 376, 506, 738, 1055
LweI	GCATC	2 cut(s)	142, 838
MaeI	CTAG	2 cut(s)	380, 629
MaeII	ACGT	1 cut(s)	465
MaeIII	GTNAC	2 cut(s)	656, 886
MalI	GATC	7 cut(s)	5, 308, 360, 378, 508, 740, 1057
MboI	GATC	7 cut(s)	3, 306, 358, 376, 506, 738, 1055
MboII	GAAGA	4 cut(s)	565, 704, 733, 1099
MfeI	CAATTG	1 cut(s)	900
MhlI	GDGCHC	1 cut(s)	114
MlsI	TGGCCA	1 cut(s)	802
MluCI	AATT	7 cut(s)	51, 82, 165, 868, 882, 900, 1107
MluNI	TGGCCA	1 cut(s)	802
MlyI	GAGTC	2 cut(s)	168, 725
Mox20I	TGGCCA	1 cut(s)	802
Mph1103I	ATGCAT	1 cut(s)	640
MscI	TGGCCA	1 cut(s)	802
MseI	TTAA	1 cut(s)	170
MslI	CAYNNNNRTG	1 cut(s)	581
Msp20I	TGGCCA	1 cut(s)	802
MspI	CCGG	9 cut(s)	100, 161, 310, 386, 556, 775, 830, 1025, 1082
MspR9I	CCNGG	6 cut(s)	161, 386, 687, 831, 921, 981
MunI	CAATTG	1 cut(s)	900
MvaI	CCWGG	3 cut(s)	687, 921, 981
MwoI	GCNNNNNNNGC	2 cut(s)	54, 142
NciI	CCSGG	3 cut(s)	161, 386, 831
NcoI	CCATGG	1 cut(s)	599
NdeII	GATC	7 cut(s)	3, 306, 358, 376, 506, 738, 1055
NlaIII	CATG	7 cut(s)	127, 211, 307, 394, 532, 603, 751
NlaIV	GGNNCC	5 cut(s)	187, 213, 314, 448, 534
NmeAIII	GCCGAG	1 cut(s)	738
NsiI	ATGCAT	1 cut(s)	640
PceI	AGGCCT	1 cut(s)	919
PfeI	GAWTC	1 cut(s)	546
PflFI	GACNNNGTC	1 cut(s)	562
PflMI	CCANNNNNTGG	2 cut(s)	692, 902
PkrI	GCNGC	1 cut(s)	853
Ple19I	CGATCG	1 cut(s)	1058
PleI	GAGTC	2 cut(s)	168, 725
PpsI	GAGTC	2 cut(s)	168, 725
Psp6I	CCWGG	3 cut(s)	685, 919, 979
PspGI	CCWGG	3 cut(s)	685, 919, 979
PspN4I	GGNNCC	5 cut(s)	187, 213, 314, 448, 534
PspPI	GGNCC	7 cut(s)	102, 211, 352, 558, 603, 718, 977
PstNI	CAGNNNCTG	1 cut(s)	35
PsyI	GACNNNGTC	1 cut(s)	562
PvuI	CGATCG	1 cut(s)	1058
RsaI	GTAC	7 cut(s)	314, 448, 587, 667, 843, 876, 1010
RsaNI	GTAC	7 cut(s)	313, 447, 586, 666, 842, 875, 1009
RseI	CAYNNNNRTG	1 cut(s)	581
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	1 cut(s)	852
Sau3AI	GATC	7 cut(s)	3, 306, 358, 376, 506, 738, 1055
Sau96I	GGNCC	7 cut(s)	102, 211, 352, 558, 603, 718, 977
ScaI	AGTACT	1 cut(s)	667
SchI	GAGTC	2 cut(s)	168, 725
ScrFI	CCNGG	6 cut(s)	161, 386, 687, 831, 921, 981
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	9 cut(s)	75, 147, 318, 344, 448, 468, 500, 759, 941
SfaNI	GCATC	2 cut(s)	142, 838
SinI	GGWCC	6 cut(s)	102, 211, 352, 558, 603, 718
SmiMI	CAYNNNNRTG	1 cut(s)	581
Sse9I	AATT	7 cut(s)	51, 82, 165, 868, 882, 900, 1107
SseBI	AGGCCT	1 cut(s)	919
SsiI	CCGC	2 cut(s)	788, 852
SspMI	CTAG	2 cut(s)	380, 629
StuI	AGGCCT	1 cut(s)	919
StyD4I	CCNGG	6 cut(s)	159, 384, 685, 829, 919, 979
StyI	CCWWGG	1 cut(s)	599
TaaI	ACNGT	4 cut(s)	31, 526, 665, 675
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	3 cut(s)	9, 44, 108
TasI	AATT	7 cut(s)	51, 82, 165, 868, 882, 900, 1107
TatI	WGTACW	2 cut(s)	665, 841
TauI	GCSGC	1 cut(s)	854
TfiI	GAWTC	1 cut(s)	546
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	3 cut(s)	235, 820, 1001
TspDTI	ATGAA	9 cut(s)	140, 237, 276, 345, 565, 931, 975, 1087, 1100
TspRI	CASTG	3 cut(s)	235, 820, 1001
Tth111I	GACNNNGTC	1 cut(s)	562
Van91I	CCANNNNNTGG	2 cut(s)	692, 902
VpaK11BI	GGWCC	6 cut(s)	102, 211, 352, 558, 603, 718
XapI	RAATTY	3 cut(s)	165, 868, 1107
XmiI	GTMKAC	1 cut(s)	677
XspI	CTAG	2 cut(s)	380, 629
ZrmI	AGTACT	1 cut(s)	667
Zsp2I	ATGCAT	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.