Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005789.1

Orthogroup ID

OG0003670

Physical Location & Seq

Genomic Coordinates Forward (+)

31221 .. 32491

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atggattcagacacagaagaaaccaggtcccaagtgaccgcaaccaaagcagagccatcaaagccatcgcgcaagcacaagaagaggaagaagctcgcagcagaagccaacccggagaagcccaaatcagtgcaagccaccatcaaggtcatcccgggaaacccagagagaatcccacctctggtgggctatttcccatctgggttcgacccgacccagaacccagaccaggattcgaccaaagttggggtctttaggcacaaggagagaggtgggactaggcttcaggttgtggtgaccccaaataaggaggctaaggttgattttgttgggactagctatgctggtgaggctcaggctggggagctctgctcttatggacttgggattcttgataaggacacccagactttgaagattgtgcctattgctagcaacaagatatttagattggagccaaaaattcaaggccttcacttctctggtaaggagcctgcaagttcagcgatgggagaactttctgtacatgagaaggcagaaaaactgtcgaagaggttatcaactgagaaaagtaatcttctcattagttatgtcttggtgctcactctttttgcggatgaattccaaacaagtatgacagacatagcgaaggatctgagaatggggactgcaactttgaggacgcattatgagaagttgggctgcaaggtgtctaagaagaatgtcgtatcaacggttacccttcctgtccccctccaatttccaacagtgaggcgcaagcgacgcaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_I_A49

Protein Analysis

263

Amino Acids

29.04

Weight (kDa)

9.75

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_I_A49	PF06870	179 - 255	3.2e-14	A49-like RNA polymerase I associated factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13940
fragaria_vesca	FvH4_2g14600 FvH4_2g14600 FvH4_2g14600 FvH4_6g34180 FvH4_6g47280
malus_domestica	MD09G1187900.v1.1 MD17G1172300.v1.1
prunus_persica	Prupe.3G044800_v2.0.a1
pyrus_communis	pycom09g10420 pycom09g10430 pycom17g16990 pycom17g17000
rosa_chinensis	RchiOBHm_Chr2g0144531 RchiOBHm_Chr2g0166351
rosa_laevigata	RLG00000020086 RLG00000021613
rosa_multiflora	Rmu_sc0005789.1_g000005 Rmu_sc0007974.1_g000004 Rmu_sc0029020.1_g000001 Rmu_sc0029020.1_g000002
rosa_roxburghii	Rroxscaffold_2G00084950 Rroxscaffold_2G00101230
rosa_rugosa	Rorug02G0387600 Rorug02G0522400
rosa_samantha	Rh2AG439600 Rh2AG588500 Rh2BG449700 Rh2BG600500 Rh2CG426600 Rh2CG571300 Rh2DG459600 Rh2DG610700
rosa_wichuraiana	Rw2G035960 Rw2G049040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	70
AciI	CCGC	2 cut(s)	39, 614
AclWI	GGATC	1 cut(s)	660
AcsI	RAATTY	2 cut(s)	462, 620
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	1 cut(s)	525
AfiI	CCNNNNNNNGG	5 cut(s)	181, 185, 229, 246, 307
AgsI	TTSAA	2 cut(s)	415, 467
AjnI	CCWGG	2 cut(s)	23, 228
AluBI	AGCT	3 cut(s)	94, 339, 367
AluI	AGCT	3 cut(s)	94, 339, 367
Alw21I	GWGCWC	2 cut(s)	369, 603
AlwI	GGATC	1 cut(s)	660
Ama87I	CYCGRG	1 cut(s)	154
AoxI	GGCC	1 cut(s)	469
ApeKI	GCWGC	2 cut(s)	98, 702
ApoI	RAATTY	2 cut(s)	462, 620
ArsI	GACNNNNNNTTYG	4 cut(s)	234, 266, 658, 690
AspLEI	GCGC	2 cut(s)	72, 777
AspS9I	GGNCC	1 cut(s)	27
AsuC2I	CCSGG	3 cut(s)	113, 155, 156
AsuHPI	GGTGA	2 cut(s)	307, 359
AsuNHI	GCTAGC	1 cut(s)	431
AvaI	CYCGRG	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	27
BanII	GRGCYC	1 cut(s)	369
Bbv12I	GWGCWC	2 cut(s)	369, 603
BbvI	GCAGC	2 cut(s)	110, 689
BccI	CCATC	5 cut(s)	64, 73, 149, 205, 502
BciT130I	CCWGG	2 cut(s)	25, 230
BcnI	CCSGG	3 cut(s)	113, 155, 156
BfaI	CTAG	3 cut(s)	279, 336, 432
BisI	GCNGC	2 cut(s)	99, 703
BlsI	GCNGC	2 cut(s)	100, 704
Bme1390I	CCNGG	5 cut(s)	25, 113, 155, 156, 230
Bme18I	GGWCC	1 cut(s)	27
BmeT110I	CYCGRG	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	3 cut(s)	29, 456, 492
BmrFI	CCNGG	5 cut(s)	25, 113, 155, 156, 230
BmtI	GCTAGC	1 cut(s)	435
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
Bpu10I	CCTNAGC	2 cut(s)	315, 354
BpuMI	CCSGG	3 cut(s)	113, 155, 156
BsaJI	CCNNGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	5 cut(s)	181, 185, 229, 246, 307
BseBI	CCWGG	2 cut(s)	25, 230
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	2 cut(s)	150, 622
BseLI	CCNNNNNNNGG	5 cut(s)	181, 185, 229, 246, 307
BseMII	CTCAG	3 cut(s)	368, 555, 647
BseXI	GCAGC	2 cut(s)	110, 689
BseYI	CCCAGC	1 cut(s)	359
Bsh1236I	CGCG	1 cut(s)	70
BshFI	GGCC	1 cut(s)	471
BsiHKAI	GWGCWC	2 cut(s)	369, 603
BsiHKCI	CYCGRG	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	113, 155
BslFI	GGGAC	5 cut(s)	13, 289, 346, 679, 734
BslI	CCNNNNNNNGG	5 cut(s)	181, 185, 229, 246, 307
BsmFI	GGGAC	5 cut(s)	13, 289, 346, 679, 734
BsnI	GGCC	1 cut(s)	471
BsoBI	CYCGRG	1 cut(s)	154
Bsp1286I	GDGCHC	2 cut(s)	369, 603
Bsp1407I	TGTACA	1 cut(s)	523
Bsp143I	GATC	1 cut(s)	652
BspACI	CCGC	2 cut(s)	39, 614
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	3 cut(s)	367, 556, 648
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	3 cut(s)	29, 456, 492
BspOI	GCTAGC	1 cut(s)	435
BspPI	GGATC	1 cut(s)	660
BsrGI	TGTACA	1 cut(s)	523
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	1 cut(s)	652
Bst2UI	CCWGG	2 cut(s)	25, 230
Bst4CI	ACNGT	3 cut(s)	546, 736, 769
Bst6I	CTCTTC	2 cut(s)	77, 545
BstAUI	TGTACA	1 cut(s)	523
BstC8I	GCNNGC	6 cut(s)	74, 96, 135, 433, 495, 779
BstDEI	CTNAG	5 cut(s)	315, 354, 564, 656, 714
BstEII	GGTNACC	2 cut(s)	295, 736
BstF5I	GGATG	2 cut(s)	150, 622
BstFNI	CGCG	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	72, 777
BstKTI	GATC	1 cut(s)	655
BstMBI	GATC	1 cut(s)	652
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 61, 104, 350, 503, 783
BstNI	CCWGG	2 cut(s)	25, 230
BstPI	GGTNACC	2 cut(s)	295, 736
BstSCI	CCNGG	5 cut(s)	23, 111, 153, 154, 228
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	110, 689
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
BsuRI	GGCC	1 cut(s)	471
BtgZI	GCGATG	2 cut(s)	51, 521
BtsCI	GGATG	2 cut(s)	150, 622
BtsIMutI	CAGTG	2 cut(s)	135, 774
Cac8I	GCNNGC	6 cut(s)	74, 96, 135, 433, 495, 779
CfoI	GCGC	2 cut(s)	72, 777
Cfr13I	GGNCC	1 cut(s)	27
Cfr9I	CCCGGG	1 cut(s)	154
CseI	GACGC	1 cut(s)	691
CsiI	ACCWGGT	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	524
CviAII	CATG	1 cut(s)	527
CviQI	GTAC	1 cut(s)	524
DdeI	CTNAG	5 cut(s)	315, 354, 564, 656, 714
DpnI	GATC	1 cut(s)	654
DpnII	GATC	1 cut(s)	652
Eam1104I	CTCTTC	2 cut(s)	77, 545
EarI	CTCTTC	2 cut(s)	77, 545
Ecl136II	GAGCTC	1 cut(s)	367
Eco147I	AGGCCT	1 cut(s)	471
Eco24I	GRGCYC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	154
Eco91I	GGTNACC	2 cut(s)	295, 736
EcoICRI	GAGCTC	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	27
EcoO65I	GGTNACC	2 cut(s)	295, 736
EcoRI	GAATTC	1 cut(s)	620
EcoRII	CCWGG	2 cut(s)	23, 228
EcoT38I	GRGCYC	1 cut(s)	369
FaeI	CATG	1 cut(s)	530
FaiI	YATR	7 cut(s)	342, 378, 528, 591, 635, 644, 690
FaqI	GGGAC	5 cut(s)	13, 289, 346, 679, 734
FatI	CATG	1 cut(s)	526
Fnu4HI	GCNGC	2 cut(s)	99, 703
FokI	GGATG	2 cut(s)	137, 629
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	2 cut(s)	99, 703
FspBI	CTAG	3 cut(s)	279, 336, 432
GlaI	GCGC	2 cut(s)	71, 776
GluI	GCNGC	2 cut(s)	99, 703
GsaI	CCCAGC	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	471
HapII	CCGG	2 cut(s)	113, 155
HgaI	GACGC	1 cut(s)	691
HhaI	GCGC	2 cut(s)	72, 777
Hin1II	CATG	1 cut(s)	530
Hin6I	GCGC	2 cut(s)	70, 775
HinP1I	GCGC	2 cut(s)	70, 775
HinfI	GANTC	4 cut(s)	5, 171, 233, 388
HpaII	CCGG	2 cut(s)	113, 155
HphI	GGTGA	2 cut(s)	307, 359
Hpy188I	TCNGA	2 cut(s)	10, 657
Hpy188III	TCNNGA	1 cut(s)	392
Hpy99I	CGWCG	1 cut(s)	786
HpyAV	CCTTC	4 cut(s)	482, 526, 643, 752
HpyCH4III	ACNGT	3 cut(s)	546, 736, 769
HpyCH4V	TGCA	4 cut(s)	133, 497, 671, 705
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 61, 104, 350, 503, 783
HpyF3I	CTNAG	5 cut(s)	315, 354, 564, 656, 714
Hsp92II	CATG	1 cut(s)	530
HspAI	GCGC	2 cut(s)	70, 775
Kzo9I	GATC	1 cut(s)	652
LmnI	GCTCC	3 cut(s)	364, 454, 490
Lsp1109I	GCAGC	2 cut(s)	110, 689
MabI	ACCWGGT	1 cut(s)	23
MaeI	CTAG	3 cut(s)	279, 336, 432
MaeIII	GTNAC	3 cut(s)	34, 295, 736
MalI	GATC	1 cut(s)	654
MboI	GATC	1 cut(s)	652
MboII	GAAGA	7 cut(s)	29, 94, 100, 427, 562, 569, 730
MfeI	CAATTG	1 cut(s)	787
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	2 cut(s)	369, 603
MluCI	AATT	4 cut(s)	462, 620, 758, 787
MmeI	TCCRAC	1 cut(s)	788
MnlI	CCTC	9 cut(s)	78, 189, 263, 304, 343, 546, 672, 764, 765
MspI	CCGG	2 cut(s)	113, 155
MspR9I	CCNGG	5 cut(s)	25, 113, 155, 156, 230
MunI	CAATTG	1 cut(s)	787
MvaI	CCWGG	2 cut(s)	25, 230
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	6 cut(s)	47, 61, 104, 350, 503, 783
NciI	CCSGG	3 cut(s)	113, 155, 156
NdeII	GATC	1 cut(s)	652
NheI	GCTAGC	1 cut(s)	431
NlaIII	CATG	1 cut(s)	530
NlaIV	GGNNCC	3 cut(s)	29, 456, 492
NmuCI	GTSAC	2 cut(s)	34, 295
PceI	AGGCCT	1 cut(s)	471
PfeI	GAWTC	4 cut(s)	5, 171, 233, 388
PkrI	GCNGC	2 cut(s)	100, 704
PpuMI	RGGWCCY	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	23, 228
PspEI	GGTNACC	2 cut(s)	295, 736
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	2 cut(s)	23, 228
PspN4I	GGNNCC	3 cut(s)	29, 456, 492
PspPI	GGNCC	1 cut(s)	27
PspPPI	RGGWCCY	1 cut(s)	27
PsrI	GAACNNNNNNTAC	2 cut(s)	507, 539
PsuI	RGATCY	1 cut(s)	652
RsaI	GTAC	1 cut(s)	525
RsaNI	GTAC	1 cut(s)	524
SacI	GAGCTC	1 cut(s)	369
SatI	GCNGC	2 cut(s)	99, 703
Sau3AI	GATC	1 cut(s)	652
Sau96I	GGNCC	1 cut(s)	27
ScrFI	CCNGG	5 cut(s)	25, 113, 155, 156, 230
SduI	GDGCHC	2 cut(s)	369, 603
SexAI	ACCWGGT	1 cut(s)	23
SinI	GGWCC	1 cut(s)	27
SmaI	CCCGGG	1 cut(s)	156
Sse9I	AATT	4 cut(s)	462, 620, 758, 787
SseBI	AGGCCT	1 cut(s)	471
SsiI	CCGC	2 cut(s)	39, 614
SspMI	CTAG	3 cut(s)	279, 336, 432
SstI	GAGCTC	1 cut(s)	369
StuI	AGGCCT	1 cut(s)	471
StyD4I	CCNGG	5 cut(s)	23, 111, 153, 154, 228
TaaI	ACNGT	3 cut(s)	546, 736, 769
TaqI	TCGA	3 cut(s)	207, 236, 548
TasI	AATT	4 cut(s)	462, 620, 758, 787
TatI	WGTACW	1 cut(s)	523
TfiI	GAWTC	4 cut(s)	5, 171, 233, 388
TscAI	CASTG	2 cut(s)	135, 774
TseFI	GTSAC	2 cut(s)	34, 295
TseI	GCWGC	2 cut(s)	98, 702
Tsp45I	GTSAC	2 cut(s)	34, 295
TspDTI	ATGAA	1 cut(s)	633
TspMI	CCCGGG	1 cut(s)	154
TspRI	CASTG	2 cut(s)	135, 774
VpaK11BI	GGWCC	1 cut(s)	27
XapI	RAATTY	2 cut(s)	462, 620
XmaI	CCCGGG	1 cut(s)	154
XspI	CTAG	3 cut(s)	279, 336, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.