Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005789.1

Orthogroup ID

OG0009876

Physical Location & Seq

Genomic Coordinates Forward (+)

73880 .. 74437

Gene Structure 558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgtcctccgatcacgaccacaacaactccgacccggtcccgacccgcctctacaacccctaccaagatctccaggtcccaattcaaaacctttaccagctccctacctccccggagttcctcttcgtcgaggaggcccgccgccagcgccgctcctggggcgaaaatctcaccttctacaccggctgcacctacctcgccggcgccgtcgccggcggatccgtcggcctcgtctccggcgtccgatcgttcgaatccggcgacaccaccaagctcaggatcaaccgggtcctcaactcgtcgggtcacacgggtcgggtctgggccaaccggctcggcgtgatcgggttgctctatgcgggtatggagagcggggttcaggcgctgagggatacggatgatgtgtggaatagcgttgcggcggggctaggtaccggggcggtgtaccgtgcggctaggggagtgaggtcggcggcggtggccggcgccgttggaggagtgctagtcggagtggcagttgcggcaaagcaggggctgaagcgatacgtgccgatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

Tim17

Protein Analysis

185

Amino Acids

19.72

Weight (kDa)

9.41

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	58 - 168	6.1e-30	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17530 AT1G17530 AT1G72750
fragaria_vesca	FvH4_6g34150 FvH4_6g34150 FvH4_6g34150
malus_domestica	MD08G1136500.v1.1 MD17G1172500.v1.1
prunus_persica	Prupe.3G045100_v2.0.a1
pyrus_communis	pycom09g10530 pycom17g17040
rosa_chinensis	RchiOBHm_Chr2g0144461
rosa_laevigata	RLG00000020083
rosa_multiflora	Rmu_sc0005789.1_g000013 Rmu_sc0007240.1_g000003
rosa_rugosa	Rorug02G0386900
rosa_samantha	Rh2AG439100 Rh2BG449400 Rh2CG426200 Rh2DG459200
rosa_wichuraiana	Rw2G035930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	431
AccB1I	GGYRCC	3 cut(s)	203, 431, 485
AccBSI	CCGCTC	2 cut(s)	153, 372
AclWI	GGATC	3 cut(s)	213, 226, 287
AcoI	YGGCCR	1 cut(s)	480
AcuI	CTGAAG	1 cut(s)	557
AcyI	GRCGYC	3 cut(s)	204, 240, 486
AfaI	GTAC	2 cut(s)	433, 446
AfiI	CCNNNNNNNGG	2 cut(s)	157, 276
AgsI	TTSAA	1 cut(s)	86
AjnI	CCWGG	2 cut(s)	72, 155
AluBI	AGCT	2 cut(s)	100, 274
AluI	AGCT	2 cut(s)	100, 274
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	3 cut(s)	213, 226, 287
AlwNI	CAGNNNCTG	2 cut(s)	385, 535
AoxI	GGCC	4 cut(s)	135, 226, 324, 480
ApeKI	GCWGC	1 cut(s)	186
Asp718I	GGTACC	1 cut(s)	431
AspLEI	GCGC	4 cut(s)	150, 206, 385, 488
AspS9I	GGNCC	5 cut(s)	37, 76, 136, 289, 324
AsuC2I	CCSGG	4 cut(s)	35, 113, 287, 436
AsuHPI	GGTGA	1 cut(s)	163
AsuII	TTCGAA	1 cut(s)	252
AvaII	GGWCC	3 cut(s)	37, 76, 289
BamHI	GGATCC	1 cut(s)	218
BanI	GGYRCC	3 cut(s)	203, 431, 485
BbvCI	CCTCAGC	1 cut(s)	386
BbvI	GCAGC	1 cut(s)	173
BceAI	ACGGC	2 cut(s)	191, 473
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BciT130I	CCWGG	2 cut(s)	74, 157
BciVI	GTATCC	1 cut(s)	385
BcnI	CCSGG	4 cut(s)	35, 113, 287, 436
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	3 cut(s)	428, 456, 503
BfoI	RGCGCY	4 cut(s)	151, 207, 386, 489
BfuI	GTATCC	1 cut(s)	385
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	7 cut(s)	142, 151, 187, 420, 453, 474, 522
BlsI	GCNGC	7 cut(s)	143, 152, 188, 421, 454, 475, 523
Bme1390I	CCNGG	6 cut(s)	35, 74, 113, 157, 287, 436
Bme18I	GGWCC	3 cut(s)	37, 76, 289
BmgT120I	GGNCC	5 cut(s)	37, 76, 136, 289, 324
BmiI	GGNNCC	7 cut(s)	39, 78, 205, 220, 290, 433, 487
BmrFI	CCNGG	6 cut(s)	35, 74, 113, 157, 287, 436
BpmI	CTGGAG	1 cut(s)	56
Bpu10I	CCTNAGC	2 cut(s)	275, 386
Bpu14I	TTCGAA	1 cut(s)	252
BpuMI	CCSGG	4 cut(s)	35, 113, 287, 436
BsaAI	YACGTR	1 cut(s)	547
BsaHI	GRCGYC	3 cut(s)	204, 240, 486
BsaJI	CCNNGG	3 cut(s)	111, 156, 435
BsaXI	ACNNNNNCTCC	6 cut(s)	11, 41, 489, 501, 519, 531
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 276
Bse118I	RCCGGY	5 cut(s)	182, 200, 212, 330, 482
BseBI	CCWGG	2 cut(s)	74, 157
BseDI	CCNNGG	3 cut(s)	111, 156, 435
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	2 cut(s)	157, 276
BseMII	CTCAG	2 cut(s)	289, 377
BseRI	GAGGAG	2 cut(s)	146, 510
BseXI	GCAGC	1 cut(s)	173
BsgI	GTGCAG	1 cut(s)	172
Bsh1285I	CGRYCG	1 cut(s)	248
BshFI	GGCC	4 cut(s)	137, 228, 326, 482
BshNI	GGYRCC	3 cut(s)	203, 431, 485
BsiEI	CGRYCG	1 cut(s)	248
BslFI	GGGAC	2 cut(s)	23, 62
BslI	CCNNNNNNNGG	2 cut(s)	157, 276
BsmAI	GTCTC	1 cut(s)	238
BsmBI	CGTCTC	1 cut(s)	238
BsmFI	GGGAC	2 cut(s)	23, 62
BsnI	GGCC	4 cut(s)	137, 228, 326, 482
Bsp119I	TTCGAA	1 cut(s)	252
Bsp143I	GATC	6 cut(s)	10, 67, 218, 245, 279, 342
BspANI	GGCC	4 cut(s)	137, 228, 326, 482
BspCNI	CTCAG	2 cut(s)	288, 378
BspLI	GGNNCC	7 cut(s)	39, 78, 205, 220, 290, 433, 487
BspPI	GGATC	3 cut(s)	213, 226, 287
BspT104I	TTCGAA	1 cut(s)	252
BspT107I	GGYRCC	3 cut(s)	203, 431, 485
BsrBI	CCGCTC	2 cut(s)	153, 372
BsrFI	RCCGGY	5 cut(s)	182, 200, 212, 330, 482
BssAI	RCCGGY	5 cut(s)	182, 200, 212, 330, 482
BssECI	CCNNGG	3 cut(s)	111, 156, 435
BssMI	GATC	6 cut(s)	10, 67, 218, 245, 279, 342
BssNI	GRCGYC	3 cut(s)	204, 240, 486
Bst2UI	CCWGG	2 cut(s)	74, 157
Bst4CI	ACNGT	1 cut(s)	449
Bst6I	CTCTTC	1 cut(s)	128
BstACI	GRCGYC	3 cut(s)	204, 240, 486
BstBAI	YACGTR	1 cut(s)	547
BstBI	TTCGAA	1 cut(s)	252
BstC8I	GCNNGC	5 cut(s)	139, 146, 202, 214, 484
BstDEI	CTNAG	2 cut(s)	275, 386
BstF5I	GGATG	1 cut(s)	403
BstH2I	RGCGCY	4 cut(s)	151, 207, 386, 489
BstHHI	GCGC	4 cut(s)	150, 206, 385, 488
BstKTI	GATC	6 cut(s)	13, 70, 221, 248, 282, 345
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	6 cut(s)	10, 67, 218, 245, 279, 342
BstMCI	CGRYCG	1 cut(s)	248
BstMWI	GCNNNNNNNGC	6 cut(s)	147, 150, 159, 479, 521, 547
BstNI	CCWGG	2 cut(s)	74, 157
BstSCI	CCNGG	6 cut(s)	33, 72, 111, 155, 285, 434
BstV1I	GCAGC	1 cut(s)	173
BstX2I	RGATCY	2 cut(s)	67, 218
BstYI	RGATCY	2 cut(s)	67, 218
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	4 cut(s)	137, 228, 326, 482
BtsCI	GGATG	1 cut(s)	403
Cac8I	GCNNGC	5 cut(s)	139, 146, 202, 214, 484
CaiI	CAGNNNCTG	2 cut(s)	385, 535
CfoI	GCGC	4 cut(s)	150, 206, 385, 488
Cfr10I	RCCGGY	5 cut(s)	182, 200, 212, 330, 482
Cfr13I	GGNCC	5 cut(s)	37, 76, 136, 289, 324
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	2 cut(s)	432, 445
CviQI	GTAC	2 cut(s)	432, 445
DdeI	CTNAG	2 cut(s)	275, 386
DinI	GGCGCC	2 cut(s)	205, 487
DpnI	GATC	6 cut(s)	12, 69, 220, 247, 281, 344
DpnII	GATC	6 cut(s)	10, 67, 218, 245, 279, 342
EaeI	YGGCCR	1 cut(s)	480
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
EciI	GGCGGA	1 cut(s)	231
Eco47I	GGWCC	3 cut(s)	37, 76, 289
Eco57I	CTGAAG	1 cut(s)	557
EcoO109I	RGGNCCY	2 cut(s)	76, 289
EcoRII	CCWGG	2 cut(s)	72, 155
EgeI	GGCGCC	2 cut(s)	205, 487
EheI	GGCGCC	2 cut(s)	205, 487
Esp3I	CGTCTC	1 cut(s)	238
FaiI	YATR	3 cut(s)	357, 365, 556
FaqI	GGGAC	2 cut(s)	23, 62
FauI	CCCGC	5 cut(s)	53, 146, 352, 365, 415
Fnu4HI	GCNGC	7 cut(s)	142, 151, 187, 420, 453, 474, 522
FokI	GGATG	1 cut(s)	410
Fsp4HI	GCNGC	7 cut(s)	142, 151, 187, 420, 453, 474, 522
FspBI	CTAG	3 cut(s)	428, 456, 503
GlaI	GCGC	4 cut(s)	149, 205, 384, 487
GluI	GCNGC	7 cut(s)	142, 151, 187, 420, 453, 474, 522
GsuI	CTGGAG	1 cut(s)	56
HaeII	RGCGCY	4 cut(s)	151, 207, 386, 489
HaeIII	GGCC	4 cut(s)	137, 228, 326, 482
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	4 cut(s)	150, 206, 385, 488
Hin1I	GRCGYC	3 cut(s)	204, 240, 486
Hin6I	GCGC	4 cut(s)	148, 204, 383, 486
HinP1I	GCGC	4 cut(s)	148, 204, 383, 486
HinfI	GANTC	1 cut(s)	254
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	4 cut(s)	10, 31, 245, 509
Hpy188III	TCNNGA	3 cut(s)	14, 40, 277
Hpy8I	GTNNAC	1 cut(s)	445
Hpy99I	CGWCG	4 cut(s)	131, 212, 227, 304
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	1 cut(s)	449
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	6 cut(s)	147, 150, 159, 479, 521, 547
HpyF3I	CTNAG	2 cut(s)	275, 386
HpySE526I	ACGT	1 cut(s)	546
Hsp92I	GRCGYC	3 cut(s)	204, 240, 486
HspAI	GCGC	4 cut(s)	148, 204, 383, 486
KasI	GGCGCC	2 cut(s)	203, 485
KpnI	GGTACC	1 cut(s)	435
KroI	GCCGGC	3 cut(s)	200, 212, 482
KroNI	GCCGGC	3 cut(s)	202, 214, 484
Kzo9I	GATC	6 cut(s)	10, 67, 218, 245, 279, 342
LmnI	GCTCC	2 cut(s)	105, 158
Lsp1109I	GCAGC	1 cut(s)	173
MaeI	CTAG	3 cut(s)	428, 456, 503
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	6 cut(s)	12, 69, 220, 247, 281, 344
MbiI	CCGCTC	2 cut(s)	153, 372
MboI	GATC	6 cut(s)	10, 67, 218, 245, 279, 342
MboII	GAAGA	1 cut(s)	115
MflI	RGATCY	2 cut(s)	67, 218
MluCI	AATT	1 cut(s)	81
Mly113I	GGCGCC	2 cut(s)	204, 486
MmeI	TCCRAC	3 cut(s)	54, 472, 487
MreI	CGCCGGCG	2 cut(s)	200, 212
MroNI	GCCGGC	3 cut(s)	200, 212, 482
MspR9I	CCNGG	6 cut(s)	35, 74, 113, 157, 287, 436
MvaI	CCWGG	2 cut(s)	74, 157
MwoI	GCNNNNNNNGC	6 cut(s)	147, 150, 159, 479, 521, 547
NaeI	GCCGGC	3 cut(s)	202, 214, 484
NarI	GGCGCC	2 cut(s)	204, 486
NciI	CCSGG	4 cut(s)	35, 113, 287, 436
NdeII	GATC	6 cut(s)	10, 67, 218, 245, 279, 342
NgoMIV	GCCGGC	3 cut(s)	200, 212, 482
NlaIV	GGNNCC	7 cut(s)	39, 78, 205, 220, 290, 433, 487
NmeAIII	GCCGAG	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	305
NspV	TTCGAA	1 cut(s)	252
PcsI	WCGNNNNNNNCGW	3 cut(s)	204, 237, 258
PdiI	GCCGGC	3 cut(s)	202, 214, 484
PfeI	GAWTC	1 cut(s)	254
PflFI	GACNNNGTC	1 cut(s)	35
PkrI	GCNGC	7 cut(s)	143, 152, 188, 421, 454, 475, 523
Ple19I	CGATCG	1 cut(s)	248
PluTI	GGCGCC	2 cut(s)	207, 489
Ppu21I	YACGTR	1 cut(s)	547
PpuMI	RGGWCCY	2 cut(s)	76, 289
Psp5II	RGGWCCY	2 cut(s)	76, 289
Psp6I	CCWGG	2 cut(s)	72, 155
PspGI	CCWGG	2 cut(s)	72, 155
PspN4I	GGNNCC	7 cut(s)	39, 78, 205, 220, 290, 433, 487
PspPI	GGNCC	5 cut(s)	37, 76, 136, 289, 324
PspPPI	RGGWCCY	2 cut(s)	76, 289
PstNI	CAGNNNCTG	2 cut(s)	385, 535
PsuI	RGATCY	2 cut(s)	67, 218
PsyI	GACNNNGTC	1 cut(s)	35
PvuI	CGATCG	1 cut(s)	248
RsaI	GTAC	2 cut(s)	433, 446
RsaNI	GTAC	2 cut(s)	432, 445
SatI	GCNGC	7 cut(s)	142, 151, 187, 420, 453, 474, 522
Sau3AI	GATC	6 cut(s)	10, 67, 218, 245, 279, 342
Sau96I	GGNCC	5 cut(s)	37, 76, 136, 289, 324
ScrFI	CCNGG	6 cut(s)	35, 74, 113, 157, 287, 436
SfoI	GGCGCC	2 cut(s)	205, 487
SfuI	TTCGAA	1 cut(s)	252
SgrAI	CRCCGGYG	2 cut(s)	200, 212
SinI	GGWCC	3 cut(s)	37, 76, 289
Sse9I	AATT	1 cut(s)	81
SspDI	GGCGCC	2 cut(s)	203, 485
SspMI	CTAG	3 cut(s)	428, 456, 503
StyD4I	CCNGG	6 cut(s)	33, 72, 111, 155, 285, 434
TaaI	ACNGT	1 cut(s)	449
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	2 cut(s)	129, 252
TasI	AATT	1 cut(s)	81
TauI	GCSGC	6 cut(s)	144, 153, 422, 455, 476, 524
TfiI	GAWTC	1 cut(s)	254
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	186
Tsp45I	GTSAC	1 cut(s)	305
TspGWI	ACGGA	2 cut(s)	211, 410
Tth111I	GACNNNGTC	1 cut(s)	35
VpaK11BI	GGWCC	3 cut(s)	37, 76, 289
XspI	CTAG	3 cut(s)	428, 456, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.