Rmu_sc0005888.1_g000001

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005888.1
OG0016446
Physical Location & Seq
Reverse (-)
390 .. 3953
3564 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 993 bp
atgagaaaagtgtggaagtacctcgaggagcattttgacacgaacttgaatgagttacagaccagactccaagagcttcagatccgcgaggaggaaattagtaaccgagaaaagcgattggaagacagagagtccgagttggaatgtcttgataagctgattgaatataagggagaggaatatgatgcaatggaggaggcaataacagagaaagagttacatgttgaacaagtgaagaccgagttgcaatccattagtttattggttgaagaaaaaagccaagagcttgatagtaaagagaagcgggttttggaggttgaggagttgcttaggaaaaaggataaggagtgtgctttgatgcaaaaccgtatcgaagagggaaggaataatttgattagggttgagaaaagtattagggaaatggatatcaaagtgaagacttctatggaggattggtccggtattatttggaatctgatagaaaggggtcgactgactgaggctgttagatttatttgcagcttcaagttaactgaaaagctccccccagtaccactcttgaaagagtatgtggaagatgcaaagaagttccgtgaaatattttgtgaaaaaaagatatctcttgatttaaaggctgagtttgtagacaacaaaataggtggtctaaaagctgtgcagcaatgcatcaaagattacaatcttgagtgcgaatacccagctgctgacattcaaatgcaagtagtgtttctggaattggaaggactggagttgcagcagagttatctcagaaaagcatgccagagcttgcattcccaggcttgttccctcctgcatctagtgacccttcagcagaagaatcatgaggaccacgtcagttcgacctggaactcgctccaggaccttgagaactcaatgaaacaggattgggattcgcgccacaagtatttggagtccctaccccatgaacttcaatgcaaagagagggaactttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida

Protein Analysis

330

Amino Acids

39.25

Weight (kDa)

5.06

Isoelectric Point (pI)

58.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 152 - 253 3.1e-22 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 23
AccI GTMKAC 2 cut(s) 490, 645
AccII CGCG 2 cut(s) 87, 934
AciI CCGC 2 cut(s) 85, 304
AclWI GGATC 1 cut(s) 76
AcuI CTGAAG 2 cut(s) 62, 830
AfaI GTAC 2 cut(s) 20, 552
AfiI CCNNNNNNNGG 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 220
AgsI TTSAA 8 cut(s) 49, 164, 227, 269, 526, 562, 731, 971
AhdI GACNNNNNGTC 1 cut(s) 130
AjiI CACGTC 1 cut(s) 871
AjnI CCWGG 3 cut(s) 813, 881, 894
AjuI GAANNNNNNNTTGG 2 cut(s) 293, 325
AluBI AGCT 8 cut(s) 76, 157, 286, 522, 541, 671, 719, 804
AluI AGCT 8 cut(s) 76, 157, 286, 522, 541, 671, 719, 804
AlwI GGATC 1 cut(s) 76
AlwNI CAGNNNCTG 1 cut(s) 722
Ama87I CYCGRG 1 cut(s) 23
ApeKI GCWGC 4 cut(s) 519, 676, 719, 772
AspLEI GCGC 1 cut(s) 936
AspS9I GGNCC 3 cut(s) 456, 865, 898
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 3 cut(s) 456, 865, 898
BbsI GAAGAC 3 cut(s) 129, 242, 443
BbvI GCAGC 4 cut(s) 531, 688, 706, 784
BciT130I CCWGG 3 cut(s) 815, 883, 896
BfaI CTAG 1 cut(s) 836
BisI GCNGC 4 cut(s) 520, 677, 720, 773
BlsI GCNGC 4 cut(s) 521, 678, 721, 774
Bme1390I CCNGG 3 cut(s) 815, 883, 896
Bme18I GGWCC 3 cut(s) 456, 865, 898
BmeRI GACNNNNNGTC 1 cut(s) 130
BmeT110I CYCGRG 1 cut(s) 23
BmgBI CACGTC 1 cut(s) 871
BmgT120I GGNCC 3 cut(s) 456, 865, 898
BmrFI CCNGG 3 cut(s) 815, 883, 896
BmrI ACTGGG 1 cut(s) 542
BmsI GCATC 5 cut(s) 175, 348, 568, 693, 841
BmuI ACTGGG 1 cut(s) 542
BpiI GAAGAC 3 cut(s) 129, 242, 443
BpmI CTGGAG 2 cut(s) 785, 878
Bpu10I CCTNAGC 1 cut(s) 329
BpuEI CTTGAG 2 cut(s) 722, 923
BsaBI GATNNNNATC 1 cut(s) 696
BsaJI CCNNGG 1 cut(s) 813
BsaWI WCCGGW 1 cut(s) 458
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 2 cut(s) 548, 768
Bse3DI GCAATG 2 cut(s) 195, 686
Bse8I GATNNNNATC 1 cut(s) 696
BseBI CCWGG 3 cut(s) 815, 883, 896
BseDI CCNNGG 1 cut(s) 813
BseJI GATNNNNATC 1 cut(s) 696
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMI GCAATG 2 cut(s) 195, 686
BseMII CTCAG 3 cut(s) 489, 627, 799
BseNI ACTGG 2 cut(s) 548, 768
BseRI GAGGAG 4 cut(s) 41, 104, 209, 335
BseXI GCAGC 4 cut(s) 531, 688, 706, 784
BseYI CCCAGC 1 cut(s) 715
BsgI GTGCAG 1 cut(s) 695
Bsh1236I CGCG 2 cut(s) 87, 934
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 1 cut(s) 459
BslFI GGGAC 1 cut(s) 937
BslI CCNNNNNNNGG 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 937
BsmI GAATGC 1 cut(s) 808
BsoBI CYCGRG 1 cut(s) 23
Bsp143I GATC 1 cut(s) 81
BspACI CCGC 2 cut(s) 85, 304
BspCNI CTCAG 3 cut(s) 490, 628, 798
BspFNI CGCG 2 cut(s) 87, 934
BspHI TCATGA 1 cut(s) 859
BspPI GGATC 1 cut(s) 76
BsrDI GCAATG 2 cut(s) 195, 686
BsrI ACTGG 2 cut(s) 548, 768
BssECI CCNNGG 1 cut(s) 813
BssMI GATC 1 cut(s) 81
Bst2UI CCWGG 3 cut(s) 815, 883, 896
Bst4CI ACNGT 1 cut(s) 368
Bst6I CTCTTC 1 cut(s) 369
BstC8I GCNNGC 2 cut(s) 796, 806
BstDEI CTNAG 4 cut(s) 329, 498, 636, 785
BstFNI CGCG 2 cut(s) 87, 934
BstHHI GCGC 1 cut(s) 936
BstKTI GATC 1 cut(s) 84
BstMBI GATC 1 cut(s) 81
BstNI CCWGG 3 cut(s) 815, 883, 896
BstNSI RCATGY 2 cut(s) 224, 798
BstSCI CCNGG 3 cut(s) 813, 881, 894
BstUI CGCG 2 cut(s) 87, 934
BstV1I GCAGC 4 cut(s) 531, 688, 706, 784
BstV2I GAAGAC 3 cut(s) 129, 242, 443
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BtrI CACGTC 1 cut(s) 871
Cac8I GCNNGC 2 cut(s) 796, 806
CaiI CAGNNNCTG 1 cut(s) 722
CciI TCATGA 1 cut(s) 859
CfoI GCGC 1 cut(s) 936
Cfr13I GGNCC 3 cut(s) 456, 865, 898
Csp6I GTAC 2 cut(s) 19, 551
CspCI CAANNNNNGTGG 2 cut(s) 640, 675
CviAII CATG 4 cut(s) 221, 795, 860, 962
CviQI GTAC 2 cut(s) 19, 551
DdeI CTNAG 4 cut(s) 329, 498, 636, 785
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
DraI TTTAAA 1 cut(s) 630
DriI GACNNNNNGTC 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 369
Eam1105I GACNNNNNGTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 369
Eco32I GATATC 2 cut(s) 427, 618
Eco47I GGWCC 3 cut(s) 456, 865, 898
Eco57I CTGAAG 2 cut(s) 62, 830
Eco88I CYCGRG 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 898
EcoRII CCWGG 3 cut(s) 813, 881, 894
EcoRV GATATC 2 cut(s) 427, 618
EcoT22I ATGCAT 1 cut(s) 686
FaeI CATG 4 cut(s) 224, 798, 863, 965
FaiI YATR 8 cut(s) 168, 183, 222, 446, 570, 796, 861, 963
FaqI GGGAC 1 cut(s) 937
FatI CATG 4 cut(s) 220, 794, 859, 961
FauI CCCGC 1 cut(s) 297
FblI GTMKAC 2 cut(s) 490, 645
Fnu4HI GCNGC 4 cut(s) 520, 677, 720, 773
Fsp4HI GCNGC 4 cut(s) 520, 677, 720, 773
FspBI CTAG 1 cut(s) 836
GlaI GCGC 1 cut(s) 935
GluI GCNGC 4 cut(s) 520, 677, 720, 773
GsaI CCCAGC 1 cut(s) 719
GsuI CTGGAG 2 cut(s) 785, 878
HapII CCGG 1 cut(s) 459
HhaI GCGC 1 cut(s) 936
Hin1II CATG 4 cut(s) 224, 798, 863, 965
Hin6I GCGC 1 cut(s) 934
HinP1I GCGC 1 cut(s) 934
HincII GTYRAC 2 cut(s) 491, 531
HindII GTYRAC 2 cut(s) 491, 531
HinfI GANTC 6 cut(s) 66, 131, 472, 856, 929, 950
HpaI GTTAAC 1 cut(s) 531
HpaII CCGG 1 cut(s) 459
Hpy166II GTNNAC 3 cut(s) 491, 531, 646
Hpy188I TCNGA 4 cut(s) 81, 136, 477, 788
Hpy188III TCNNGA 6 cut(s) 149, 559, 623, 701, 749, 860
Hpy8I GTNNAC 3 cut(s) 491, 531, 646
HpyAV CCTTC 3 cut(s) 375, 752, 854
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4IV ACGT 1 cut(s) 870
HpyF3I CTNAG 4 cut(s) 329, 498, 636, 785
HpySE526I ACGT 1 cut(s) 870
Hsp92II CATG 4 cut(s) 224, 798, 863, 965
HspAI GCGC 1 cut(s) 934
KspAI GTTAAC 1 cut(s) 531
Kzo9I GATC 1 cut(s) 81
LmnI GCTCC 3 cut(s) 28, 546, 897
Lsp1109I GCAGC 4 cut(s) 531, 688, 706, 784
LweI GCATC 5 cut(s) 175, 348, 568, 693, 841
MaeI CTAG 1 cut(s) 836
MaeII ACGT 1 cut(s) 870
MaeIII GTNAC 4 cut(s) 54, 101, 216, 838
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 7 cut(s) 134, 247, 281, 386, 448, 587, 865
MflI RGATCY 1 cut(s) 81
MluCI AATT 3 cut(s) 96, 388, 752
MlyI GAGTC 3 cut(s) 60, 140, 959
MmeI TCCRAC 1 cut(s) 120
Mph1103I ATGCAT 1 cut(s) 686
MseI TTAA 2 cut(s) 530, 629
MslI CAYNNNNRTG 1 cut(s) 731
MspA1I CMGCKG 1 cut(s) 719
MspI CCGG 1 cut(s) 459
MspR9I CCNGG 3 cut(s) 815, 883, 896
Mva1269I GAATGC 1 cut(s) 808
MvaI CCWGG 3 cut(s) 815, 883, 896
MvnI CGCG 2 cut(s) 87, 934
NdeII GATC 1 cut(s) 81
NlaIII CATG 4 cut(s) 224, 798, 863, 965
NmuCI GTSAC 1 cut(s) 838
NsiI ATGCAT 1 cut(s) 686
NspI RCATGY 2 cut(s) 224, 798
PaeI GCATGC 1 cut(s) 798
PaeR7I CTCGAG 1 cut(s) 23
PagI TCATGA 1 cut(s) 859
PciI ACATGT 1 cut(s) 220
PctI GAATGC 1 cut(s) 808
PfeI GAWTC 3 cut(s) 472, 856, 929
PflFI GACNNNGTC 1 cut(s) 869
PfoI TCCNGGA 1 cut(s) 894
PkrI GCNGC 4 cut(s) 521, 678, 721, 774
PleI GAGTC 3 cut(s) 60, 139, 958
PpsI GAGTC 3 cut(s) 60, 139, 958
PpuMI RGGWCCY 1 cut(s) 898
PscI ACATGT 1 cut(s) 220
Psp5II RGGWCCY 1 cut(s) 898
Psp6I CCWGG 3 cut(s) 813, 881, 894
PspFI CCCAGC 1 cut(s) 715
PspGI CCWGG 3 cut(s) 813, 881, 894
PspPI GGNCC 3 cut(s) 456, 865, 898
PspPPI RGGWCCY 1 cut(s) 898
PspXI VCTCGAGB 1 cut(s) 23
PstNI CAGNNNCTG 1 cut(s) 722
PsuI RGATCY 1 cut(s) 81
PsyI GACNNNGTC 1 cut(s) 869
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 2 cut(s) 20, 552
RsaNI GTAC 2 cut(s) 19, 551
RseI CAYNNNNRTG 1 cut(s) 731
SalI GTCGAC 1 cut(s) 489
SaqAI TTAA 2 cut(s) 530, 629
SatI GCNGC 4 cut(s) 520, 677, 720, 773
Sau3AI GATC 1 cut(s) 81
Sau96I GGNCC 3 cut(s) 456, 865, 898
SchI GAGTC 3 cut(s) 60, 140, 959
ScrFI CCNGG 3 cut(s) 815, 883, 896
SfaNI GCATC 5 cut(s) 175, 348, 568, 693, 841
Sfr274I CTCGAG 1 cut(s) 23
SinI GGWCC 3 cut(s) 456, 865, 898
SlaI CTCGAG 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 731
SmlI CTYRAG 3 cut(s) 23, 701, 902
SmoI CTYRAG 3 cut(s) 23, 701, 902
SphI GCATGC 1 cut(s) 798
Sse9I AATT 3 cut(s) 96, 388, 752
SsiI CCGC 2 cut(s) 85, 304
SspI AATATT 1 cut(s) 600
SspMI CTAG 1 cut(s) 836
StyD4I CCNGG 3 cut(s) 813, 881, 894
TaaI ACNGT 1 cut(s) 368
TaiI ACGT 1 cut(s) 873
TaqI TCGA 4 cut(s) 24, 372, 490, 878
TaqII GACCGA 1 cut(s) 254
TasI AATT 3 cut(s) 96, 388, 752
TfiI GAWTC 3 cut(s) 472, 856, 929
Tru1I TTAA 2 cut(s) 530, 629
Tru9I TTAA 2 cut(s) 530, 629
TseFI GTSAC 1 cut(s) 838
TseI GCWGC 4 cut(s) 519, 676, 719, 772
Tsp45I GTSAC 1 cut(s) 838
TspDTI ATGAA 2 cut(s) 929, 978
TspGWI ACGGA 1 cut(s) 581
Tth111I GACNNNGTC 1 cut(s) 869
VpaK11BI GGWCC 3 cut(s) 456, 865, 898
XceI RCATGY 2 cut(s) 224, 798
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
XhoI CTCGAG 1 cut(s) 23
XmiI GTMKAC 2 cut(s) 490, 645
XspI CTAG 1 cut(s) 836
Zsp2I ATGCAT 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.