Rmu_sc0006103.1_g000004

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006103.1
OG0013290
Physical Location & Seq
Forward (+)
14805 .. 17507
2703 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1290 bp
atgtctgactctactgcatcgtcttcttcttctcctaaatggctatattcatatataaagcttcgctttttcaatcgcatacggaggttcctgcgctccaagaaaagtaaccggaagaggaacacgacgtcgtctgatctcttagatacgtcgagcttgagaccggtcaaggttatggtgaaggagagcagtagtgatcatgaggatgatggtttggggttgcagagggcggtgaagaagcttcactttggcagctgggaagagaaggagttggcggctgaggagattgggacgttggccatggatgacgtcaaggtgaggaaattggtaggtggactcgggattataccagtgttggtgtccatggcggcgtcggaggtggttgatcgccggcgagtggccgtttccgccttggttcagcttgccaatggaacttacacgaacaaggctctcatggttgaggcaggaatcttctccaaactaccaaaagacatcaacattctcgatgagccaacaaggcatcaatttgcagaactgctcatgttgttatcttcacttgcaaataccccatttcctctgccctcatcggaaattgtcccgtttctagttggcattctagagtcagattcgaccaatgtcgaaaccaaacagtcatgtttgggtacacttcacaacctatccaccatgttggacaatgcaggagatttagtctccaatggggtggtggacacactcttgaaattgtctttcgataaagaaatctccgagaaagctcttgcaacattggggaacttggttgtgaccttaatggggaagaaggctatggaaaatagtcctctggtcccagagagtttgatagaaattttgacatgggatgaaaaatccaaatgccaggaactttcaagctacattctaatgattttagctcatcaaagctcagaccaaagagcgaaaatggccaagtctggaattgtgcctgtacttcttgaagtggcattattgggtagctctctagctcagaaaagagcgctaaaactgttgcagtggttcaaggacgaaaggcaagcgaaaatgggcccccattccgggcctcagactgcaaggttcgcattcggttcacctgtgaatccactggaggctcaacaagggaagaagatgatgaagaatttggtgaaacagagtttagataagaatatggagatgataacgcggcgggcgagtgcttctggagactcttctaagattaaggctttgattattagcacaagttctaagagtttgccttactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

429

Amino Acids

47.14

Weight (kDa)

9.41

Isoelectric Point (pI)

52.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_ARMC5 PF24768 195 - 336 2.3e-07 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013290)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27430
fragaria_vesca FvH4_3g07900
malus_domestica MD05G1302200.v1.1 MD10G1280900.v1.1
prunus_persica Prupe.4G060200_v2.0.a1
pyrus_communis pycom05g27980
rosa_chinensis RchiOBHm_Chr5g0010651
rosa_laevigata RLG00000031769
rosa_multiflora Rmu_co8124782.1_g000001 Rmu_sc0006103.1_g000004 Rmu_sc0014635.1_g000002
rosa_roxburghii Rroxscaffold_1G00065720
rosa_rugosa Rorug04G0451500
rosa_samantha Rh5AG083100 Rh5BG078400 Rh5CG091100 Rh5DG078500
rosa_wichuraiana Rw0G000670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 131, 312
AccII CGCG 1 cut(s) 1210
AciI CCGC 6 cut(s) 230, 275, 368, 408, 1210, 1213
AcoI YGGCCR 3 cut(s) 297, 399, 957
AcsI RAATTY 2 cut(s) 861, 1165
AcyI GRCGYC 3 cut(s) 128, 309, 371
AfaI GTAC 2 cut(s) 664, 981
AfeI AGCGCT 1 cut(s) 1029
AfiI CCNNNNNNNGG 4 cut(s) 397, 810, 1085, 1086
AgeI ACCGGT 1 cut(s) 163
AgsI TTSAA 5 cut(s) 73, 739, 903, 989, 1051
AjnI CCWGG 1 cut(s) 891
Alw26I GTCTC 3 cut(s) 154, 715, 1224
Ama87I CYCGRG 1 cut(s) 338
Aor51HI AGCGCT 1 cut(s) 1029
AoxI GGCC 5 cut(s) 297, 399, 957, 1075, 1088
ApaI GGGCCC 1 cut(s) 1079
ApeKI GCWGC 1 cut(s) 252
ApoI RAATTY 2 cut(s) 861, 1165
AsiGI ACCGGT 1 cut(s) 163
AspLEI GCGC 2 cut(s) 96, 1030
AspS9I GGNCC 4 cut(s) 841, 1075, 1076, 1088
AsuC2I CCSGG 1 cut(s) 1087
AsuHPI GGTGA 5 cut(s) 190, 244, 328, 1110, 1183
AvaI CYCGRG 1 cut(s) 338
AvaII GGWCC 1 cut(s) 841
BaeGI GKGCMC 1 cut(s) 1079
BalI TGGCCA 2 cut(s) 299, 959
BanII GRGCYC 1 cut(s) 1079
BbsI GAAGAC 1 cut(s) 15
BbvCI CCTCAGC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 264
BccI CCATC 1 cut(s) 203
BceAI ACGGC 1 cut(s) 386
BciT130I CCWGG 1 cut(s) 893
BclI TGATCA 1 cut(s) 196
BcnI CCSGG 1 cut(s) 1087
BcoDI GTCTC 3 cut(s) 154, 715, 1224
BfaI CTAG 3 cut(s) 605, 617, 1013
BfoI RGCGCY 1 cut(s) 1031
BglI GCCNNNNNGGC 1 cut(s) 517
BisI GCNGC 4 cut(s) 253, 276, 369, 1211
BlsI GCNGC 4 cut(s) 254, 277, 370, 1212
Bme1390I CCNGG 2 cut(s) 893, 1087
Bme18I GGWCC 1 cut(s) 841
BmeT110I CYCGRG 1 cut(s) 338
BmgT120I GGNCC 4 cut(s) 841, 1075, 1076, 1088
BmiI GGNNCC 4 cut(s) 89, 843, 1077, 1078
BmrFI CCNGG 2 cut(s) 893, 1087
BmsI GCATC 2 cut(s) 26, 529
BoxI GACNNNNGTC 1 cut(s) 635
BpiI GAAGAC 1 cut(s) 15
BpmI CTGGAG 2 cut(s) 1154, 1248
Bpu10I CCTNAGC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 1087
BsaHI GRCGYC 3 cut(s) 128, 309, 371
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 3 cut(s) 300, 363, 411
BsaWI WCCGGW 2 cut(s) 111, 163
BsaXI ACNNNNNCTCC 2 cut(s) 693, 723
Bsc4I CCNNNNNNNGG 4 cut(s) 397, 810, 1085, 1086
Bse118I RCCGGY 2 cut(s) 163, 390
Bse1I ACTGG 2 cut(s) 350, 1137
BseBI CCWGG 1 cut(s) 893
BseDI CCNNGG 3 cut(s) 300, 363, 411
BseGI GGATG 3 cut(s) 211, 310, 880
BseLI CCNNNNNNNGG 4 cut(s) 397, 810, 1085, 1086
BseMII CTCAG 4 cut(s) 270, 951, 1031, 1106
BseNI ACTGG 2 cut(s) 350, 1137
BseRI GAGGAG 1 cut(s) 296
BseSI GKGCMC 1 cut(s) 1079
BseXI GCAGC 1 cut(s) 264
BseYI CCCAGC 1 cut(s) 255
Bsh1236I CGCG 1 cut(s) 1210
BshFI GGCC 5 cut(s) 299, 401, 959, 1077, 1090
BshTI ACCGGT 1 cut(s) 163
BsiHKCI CYCGRG 1 cut(s) 338
BsiSI CCGG 4 cut(s) 112, 164, 391, 1086
BslFI GGGAC 3 cut(s) 304, 581, 827
BslI CCNNNNNNNGG 4 cut(s) 397, 810, 1085, 1086
BsmAI GTCTC 3 cut(s) 154, 715, 1224
BsmFI GGGAC 3 cut(s) 304, 581, 827
BsmI GAATGC 2 cut(s) 612, 1109
BsnI GGCC 5 cut(s) 299, 401, 959, 1077, 1090
Bso31I GGTCTC 1 cut(s) 154
BsoBI CYCGRG 1 cut(s) 338
Bsp120I GGGCCC 1 cut(s) 1075
Bsp1286I GDGCHC 1 cut(s) 1079
Bsp143I GATC 3 cut(s) 136, 196, 385
Bsp19I CCATGG 2 cut(s) 300, 363
BspACI CCGC 6 cut(s) 230, 275, 368, 408, 1210, 1213
BspANI GGCC 5 cut(s) 299, 401, 959, 1077, 1090
BspCNI CTCAG 4 cut(s) 271, 950, 1030, 1105
BspFNI CGCG 1 cut(s) 1210
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 4 cut(s) 89, 843, 1077, 1078
BspTNI GGTCTC 1 cut(s) 154
BsrFI RCCGGY 2 cut(s) 163, 390
BsrI ACTGG 2 cut(s) 350, 1137
BssAI RCCGGY 2 cut(s) 163, 390
BssECI CCNNGG 3 cut(s) 300, 363, 411
BssMI GATC 3 cut(s) 136, 196, 385
BssNI GRCGYC 3 cut(s) 128, 309, 371
BssT1I CCWWGG 3 cut(s) 300, 363, 411
Bst2UI CCWGG 1 cut(s) 893
Bst4CI ACNGT 2 cut(s) 651, 1038
Bst6I CTCTTC 3 cut(s) 110, 255, 1240
BstACI GRCGYC 3 cut(s) 128, 309, 371
BstC8I GCNNGC 4 cut(s) 392, 423, 1065, 1215
BstDEI CTNAG 7 cut(s) 142, 279, 937, 1017, 1092, 1239, 1272
BstDSI CCRYGG 2 cut(s) 300, 363
BstF5I GGATG 3 cut(s) 211, 310, 880
BstFNI CGCG 1 cut(s) 1210
BstH2I RGCGCY 1 cut(s) 1031
BstHHI GCGC 2 cut(s) 96, 1030
BstKTI GATC 3 cut(s) 139, 199, 388
BstMAI GTCTC 3 cut(s) 154, 715, 1224
BstMBI GATC 3 cut(s) 136, 196, 385
BstMWI GCNNNNNNNGC 4 cut(s) 407, 517, 956, 1106
BstNI CCWGG 1 cut(s) 893
BstPAI GACNNNNGTC 1 cut(s) 635
BstSCI CCNGG 2 cut(s) 891, 1085
BstSLI GKGCMC 1 cut(s) 1079
BstUI CGCG 1 cut(s) 1210
BstV1I GCAGC 1 cut(s) 264
BstV2I GAAGAC 1 cut(s) 15
BstXI CCANNNNNNTGG 2 cut(s) 688, 721
BsuRI GGCC 5 cut(s) 299, 401, 959, 1077, 1090
BtgI CCRYGG 2 cut(s) 300, 363
BtsCI GGATG 3 cut(s) 211, 310, 880
BtsI GCAGTG 1 cut(s) 1049
BtsIMutI CAGTG 3 cut(s) 357, 1049, 1130
Cac8I GCNNGC 4 cut(s) 392, 423, 1065, 1215
CciI TCATGA 1 cut(s) 199
CfoI GCGC 2 cut(s) 96, 1030
Cfr10I RCCGGY 2 cut(s) 163, 390
Cfr13I GGNCC 4 cut(s) 841, 1075, 1076, 1088
CseI GACGC 1 cut(s) 360
Csp6I GTAC 2 cut(s) 663, 980
CspAI ACCGGT 1 cut(s) 163
CviAII CATG 8 cut(s) 200, 301, 364, 454, 541, 654, 685, 870
CviQI GTAC 2 cut(s) 663, 980
DdeI CTNAG 7 cut(s) 142, 279, 937, 1017, 1092, 1239, 1272
DpnI GATC 3 cut(s) 138, 198, 387
DpnII GATC 3 cut(s) 136, 196, 385
EaeI YGGCCR 3 cut(s) 297, 399, 957
Eam1104I CTCTTC 3 cut(s) 110, 255, 1240
EarI CTCTTC 3 cut(s) 110, 255, 1240
EciI GGCGGA 1 cut(s) 397
Eco130I CCWWGG 3 cut(s) 300, 363, 411
Eco24I GRGCYC 1 cut(s) 1079
Eco31I GGTCTC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 841
Eco47III AGCGCT 1 cut(s) 1029
Eco88I CYCGRG 1 cut(s) 338
EcoO109I RGGNCCY 1 cut(s) 1076
EcoRII CCWGG 1 cut(s) 891
EcoT14I CCWWGG 3 cut(s) 300, 363, 411
EcoT38I GRGCYC 1 cut(s) 1079
ErhI CCWWGG 3 cut(s) 300, 363, 411
FaeI CATG 8 cut(s) 203, 304, 367, 457, 544, 657, 688, 873
FalI AAGNNNNNCTT 4 cut(s) 50, 82, 230, 262
FaqI GGGAC 3 cut(s) 304, 581, 827
FatI CATG 8 cut(s) 199, 300, 363, 453, 540, 653, 684, 869
FauI CCCGC 1 cut(s) 1206
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 4 cut(s) 253, 276, 369, 1211
FokI GGATG 3 cut(s) 218, 317, 887
FriOI GRGCYC 1 cut(s) 1079
Fsp4HI GCNGC 4 cut(s) 253, 276, 369, 1211
FspBI CTAG 3 cut(s) 605, 617, 1013
GlaI GCGC 2 cut(s) 95, 1029
GluI GCNGC 4 cut(s) 253, 276, 369, 1211
GsaI CCCAGC 1 cut(s) 259
GsuI CTGGAG 2 cut(s) 1154, 1248
HaeII RGCGCY 1 cut(s) 1031
HaeIII GGCC 5 cut(s) 299, 401, 959, 1077, 1090
HapII CCGG 4 cut(s) 112, 164, 391, 1086
HgaI GACGC 1 cut(s) 360
HhaI GCGC 2 cut(s) 96, 1030
Hin1I GRCGYC 3 cut(s) 128, 309, 371
Hin1II CATG 8 cut(s) 203, 304, 367, 457, 544, 657, 688, 873
Hin6I GCGC 2 cut(s) 94, 1028
HinP1I GCGC 2 cut(s) 94, 1028
HindIII AAGCTT 2 cut(s) 59, 239
HinfI GANTC 7 cut(s) 8, 336, 468, 620, 626, 1126, 1232
HpaII CCGG 4 cut(s) 112, 164, 391, 1086
HphI GGTGA 5 cut(s) 190, 244, 328, 1110, 1183
Hpy166II GTNNAC 4 cut(s) 335, 665, 727, 1118
Hpy188I TCNGA 9 cut(s) 7, 136, 376, 589, 625, 766, 940, 1020, 1095
Hpy188III TCNNGA 8 cut(s) 200, 340, 503, 617, 736, 966, 986, 1227
Hpy8I GTNNAC 4 cut(s) 335, 665, 727, 1118
Hpy99I CGWCG 4 cut(s) 130, 133, 154, 376
HpyAV CCTTC 3 cut(s) 175, 259, 811
HpyCH4III ACNGT 2 cut(s) 651, 1038
HpyCH4IV ACGT 4 cut(s) 128, 149, 293, 309
HpyCH4V TGCA 8 cut(s) 17, 223, 530, 560, 698, 779, 1042, 1100
HpyF10VI GCNNNNNNNGC 4 cut(s) 407, 517, 956, 1106
HpyF3I CTNAG 7 cut(s) 142, 279, 937, 1017, 1092, 1239, 1272
HpySE526I ACGT 4 cut(s) 128, 149, 293, 309
Hsp92I GRCGYC 3 cut(s) 128, 309, 371
Hsp92II CATG 8 cut(s) 203, 304, 367, 457, 544, 657, 688, 873
HspAI GCGC 2 cut(s) 94, 1028
KroI GCCGGC 1 cut(s) 390
KroNI GCCGGC 1 cut(s) 392
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 3 cut(s) 136, 196, 385
LmnI GCTCC 1 cut(s) 101
Lsp1109I GCAGC 1 cut(s) 264
LweI GCATC 2 cut(s) 26, 529
MaeI CTAG 3 cut(s) 605, 617, 1013
MaeII ACGT 4 cut(s) 128, 149, 293, 309
MaeIII GTNAC 2 cut(s) 107, 799
MalI GATC 3 cut(s) 138, 198, 387
MboI GATC 3 cut(s) 136, 196, 385
MhlI GDGCHC 1 cut(s) 1079
MlsI TGGCCA 2 cut(s) 299, 959
MluCI AATT 7 cut(s) 323, 524, 591, 740, 861, 969, 1165
MluNI TGGCCA 2 cut(s) 299, 959
MlyI GAGTC 4 cut(s) 2, 330, 629, 1226
MmeI TCCRAC 2 cut(s) 354, 669
Mox20I TGGCCA 2 cut(s) 299, 959
MreI CGCCGGCG 1 cut(s) 390
MroNI GCCGGC 1 cut(s) 390
MscI TGGCCA 2 cut(s) 299, 959
MseI TTAA 2 cut(s) 806, 1245
MslI CAYNNNNRTG 2 cut(s) 204, 914
Msp20I TGGCCA 2 cut(s) 299, 959
MspA1I CMGCKG 1 cut(s) 255
MspI CCGG 4 cut(s) 112, 164, 391, 1086
MspR9I CCNGG 2 cut(s) 893, 1087
Mva1269I GAATGC 2 cut(s) 612, 1109
MvaI CCWGG 1 cut(s) 893
MvnI CGCG 1 cut(s) 1210
MwoI GCNNNNNNNGC 4 cut(s) 407, 517, 956, 1106
NaeI GCCGGC 1 cut(s) 392
NciI CCSGG 1 cut(s) 1087
NcoI CCATGG 2 cut(s) 300, 363
NdeII GATC 3 cut(s) 136, 196, 385
NgoMIV GCCGGC 1 cut(s) 390
NlaIII CATG 8 cut(s) 203, 304, 367, 457, 544, 657, 688, 873
NlaIV GGNNCC 4 cut(s) 89, 843, 1077, 1078
NmuCI GTSAC 1 cut(s) 799
PagI TCATGA 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 1214
PctI GAATGC 2 cut(s) 612, 1109
PdiI GCCGGC 1 cut(s) 392
PfeI GAWTC 3 cut(s) 468, 626, 1126
PflFI GACNNNGTC 1 cut(s) 130
PinAI ACCGGT 1 cut(s) 163
PkrI GCNGC 4 cut(s) 254, 277, 370, 1212
PleI GAGTC 4 cut(s) 2, 330, 628, 1226
PpsI GAGTC 4 cut(s) 2, 330, 628, 1226
PshAI GACNNNNGTC 1 cut(s) 635
Psp6I CCWGG 1 cut(s) 891
PspFI CCCAGC 1 cut(s) 255
PspGI CCWGG 1 cut(s) 891
PspN4I GGNNCC 4 cut(s) 89, 843, 1077, 1078
PspOMI GGGCCC 1 cut(s) 1075
PspPI GGNCC 4 cut(s) 841, 1075, 1076, 1088
PsyI GACNNNGTC 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 255
RsaI GTAC 2 cut(s) 664, 981
RsaNI GTAC 2 cut(s) 663, 980
RseI CAYNNNNRTG 2 cut(s) 204, 914
SaqAI TTAA 2 cut(s) 806, 1245
SatI GCNGC 4 cut(s) 253, 276, 369, 1211
Sau3AI GATC 3 cut(s) 136, 196, 385
Sau96I GGNCC 4 cut(s) 841, 1075, 1076, 1088
SchI GAGTC 4 cut(s) 2, 330, 629, 1226
ScrFI CCNGG 2 cut(s) 893, 1087
SduI GDGCHC 1 cut(s) 1079
SfaNI GCATC 2 cut(s) 26, 529
SgrAI CRCCGGYG 1 cut(s) 390
SinI GGWCC 1 cut(s) 841
SmiMI CAYNNNNRTG 2 cut(s) 204, 914
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 7 cut(s) 323, 524, 591, 740, 861, 969, 1165
SsiI CCGC 6 cut(s) 230, 275, 368, 408, 1210, 1213
SspMI CTAG 3 cut(s) 605, 617, 1013
StyD4I CCNGG 2 cut(s) 891, 1085
StyI CCWWGG 3 cut(s) 300, 363, 411
TaaI ACNGT 2 cut(s) 651, 1038
TaiI ACGT 4 cut(s) 131, 152, 296, 312
TaqI TCGA 5 cut(s) 152, 504, 629, 639, 750
TasI AATT 7 cut(s) 323, 524, 591, 740, 861, 969, 1165
TatI WGTACW 1 cut(s) 979
TauI GCSGC 3 cut(s) 278, 371, 1213
TfiI GAWTC 3 cut(s) 468, 626, 1126
Tru1I TTAA 2 cut(s) 806, 1245
Tru9I TTAA 2 cut(s) 806, 1245
TscAI CASTG 3 cut(s) 357, 1049, 1137
TseFI GTSAC 1 cut(s) 799
TseI GCWGC 1 cut(s) 252
Tsp45I GTSAC 1 cut(s) 799
TspDTI ATGAA 3 cut(s) 39, 891, 1175
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 3 cut(s) 357, 1049, 1137
Tth111I GACNNNGTC 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 841
XapI RAATTY 2 cut(s) 861, 1165
XbaI TCTAGA 1 cut(s) 616
XcmI CCANNNNNNNNNTGG 1 cut(s) 721
XspI CTAG 3 cut(s) 605, 617, 1013
ZraI GACGTC 2 cut(s) 129, 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.