Rmu_sc0006144.1_g000002

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006144.1
OG0014357
Physical Location & Seq
Forward (+)
8569 .. 9633
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1065 bp
atgccattcaatgcatccaagtcattatcacaaccctgtgtccgtctaaccccagctgcagcagcgcttgctgctcaggaatcaactctaaaatcagccaactctgactccttggctaccaaactccagaaacttcttatgctttcttctcatcaccggctagttctgtcaaagttggttcaccttggtccagatcttggtcttcaccctaattttcggtctcgtctttgcaatgaccatccagaaaaattcaagactattgatacctcctacggccgtgcacttgagcttgtatcctgggaccaagacctggcaaaacctttaccgcctccacaagttcaatcgcgtgggctgatagtagacaggcctttgaagttcaagcatttgaatcttcggaagggtctgaatctgaagaggcgacaccaagaatttttgatgagatttagagaaattccagatgtgtgcccttacaatacccctgcctcagaattgccaaaagagtcaattgaggcagagaaaagagcttgtttggtggtgagagaaatgctagggatgatggttgaaaagagaacattaatagaccacatgacacattttagaaaagagtttggtctgcccaacaagttgagagggatgattgtgaggcaccctgagttattctatgtgagcttgaaagggcagagggattctgtattcctggtggagggctatgatgagaatggttcacttttagacaagaagaaagaaactttggtgataaaggaaaagttgatggagttggtcagggaaagcaagaggttgagaaaagagaggaggaaagctcgccttaataacactaggattgatgaccgtaatggtgataatagtgatgatgaagatgatgatgatgatgattattatgatgatggcttcctggatttgtttgagtctgaggatctgtatttggatgacattggtgatgataaaagtgagacactaaattacaggcaggatggtgagttttggactgcagatgcttattctgatgttgaaggaagagatgggcaacatttggagccttggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

354

Amino Acids

40.92

Weight (kDa)

6.05

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 5 - 265 3.2e-77 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62990
fragaria_vesca FvH4_4g12420
malus_domestica MD04G1026700.v1.1 MD04G1027400.v1.1
prunus_persica Prupe.1G176800_v2.0.a1
pyrus_communis pycom04g02270
rosa_chinensis RchiOBHm_Chr4g0410651
rosa_laevigata RLG00000008409
rosa_multiflora Rmu_co8404567.1_g000001 Rmu_sc0006144.1_g000002
rosa_roxburghii Rroxscaffold_5G00355430
rosa_rugosa Rorug04G0111800
rosa_samantha Rh4AG162100 Rh4BG161100 Rh4CG175100 Rh4DG157900
rosa_wichuraiana Rw4G013520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 645
AccB7I CCANNNNNTGG 2 cut(s) 197, 310
AccI GTMKAC 1 cut(s) 360
AccII CGCG 1 cut(s) 346
AciI CCGC 1 cut(s) 326
AclWI GGATC 1 cut(s) 942
AcoI YGGCCR 1 cut(s) 274
AcsI RAATTY 3 cut(s) 248, 428, 450
AcuI CTGAAG 1 cut(s) 431
AfeI AGCGCT 1 cut(s) 66
AfiI CCNNNNNNNGG 3 cut(s) 197, 310, 703
AgsI TTSAA 9 cut(s) 10, 253, 341, 373, 379, 388, 563, 673, 1031
AjnI CCWGG 4 cut(s) 296, 309, 696, 912
AjuI GAANNNNNNNTTGG 2 cut(s) 734, 766
AluBI AGCT 5 cut(s) 56, 289, 524, 669, 821
AluI AGCT 5 cut(s) 56, 289, 524, 669, 821
Alw21I GWGCWC 1 cut(s) 283
Alw26I GTCTC 2 cut(s) 225, 965
Alw44I GTGCAC 1 cut(s) 279
AlwI GGATC 1 cut(s) 942
Aor51HI AGCGCT 1 cut(s) 66
AoxI GGCC 2 cut(s) 274, 365
ApaLI GTGCAC 1 cut(s) 279
ApeKI GCWGC 4 cut(s) 56, 59, 62, 71
ApoI RAATTY 3 cut(s) 248, 428, 450
AseI ATTAAT 1 cut(s) 575
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 2 cut(s) 188, 301
AsuHPI GGTGA 8 cut(s) 146, 173, 197, 547, 766, 869, 968, 1007
AvaII GGWCC 2 cut(s) 188, 301
BaeGI GKGCMC 2 cut(s) 283, 467
BanI GGYRCC 1 cut(s) 645
BbsI GAAGAC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 283
BbvI GCAGC 4 cut(s) 43, 58, 71, 74
BccI CCATC 6 cut(s) 246, 550, 766, 899, 986, 1034
BceAI ACGGC 2 cut(s) 261, 289
BciT130I CCWGG 4 cut(s) 298, 311, 698, 914
BciVI GTATCC 1 cut(s) 304
BcoDI GTCTC 2 cut(s) 225, 965
BfaI CTAG 3 cut(s) 161, 548, 837
BfmI CTRYAG 2 cut(s) 57, 1008
BfoI RGCGCY 1 cut(s) 68
BfuI GTATCC 1 cut(s) 304
BglII AGATCT 1 cut(s) 193
BisI GCNGC 4 cut(s) 57, 60, 63, 72
BlsI GCNGC 4 cut(s) 58, 61, 64, 73
Bme1390I CCNGG 4 cut(s) 298, 311, 698, 914
Bme18I GGWCC 2 cut(s) 188, 301
BmgT120I GGNCC 2 cut(s) 188, 301
BmiI GGNNCC 3 cut(s) 302, 647, 1056
BmrFI CCNGG 4 cut(s) 298, 311, 698, 914
BmsI GCATC 2 cut(s) 23, 1003
BpiI GAAGAC 1 cut(s) 194
BplI GAGNNNNNCTC 2 cut(s) 805, 837
BpmI CTGGAG 1 cut(s) 110
Bpu10I CCTNAGC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 305
BsaI GGTCTC 1 cut(s) 225
BsaJI CCNNGG 4 cut(s) 111, 184, 297, 1058
BsaXI ACNNNNNCTCC 3 cut(s) 92, 122, 1046
Bsc4I CCNNNNNNNGG 3 cut(s) 197, 310, 703
Bse118I RCCGGY 1 cut(s) 156
Bse3DI GCAATG 1 cut(s) 238
BseBI CCWGG 4 cut(s) 298, 311, 698, 914
BseDI CCNNGG 4 cut(s) 111, 184, 297, 1058
BseGI GGATG 6 cut(s) 14, 238, 558, 639, 952, 997
BseLI CCNNNNNNNGG 3 cut(s) 197, 310, 703
BseMI GCAATG 1 cut(s) 238
BseMII CTCAG 4 cut(s) 89, 498, 642, 921
BseRI GAGGAG 1 cut(s) 826
BseSI GKGCMC 2 cut(s) 283, 467
BseX3I CGGCCG 1 cut(s) 274
BseXI GCAGC 4 cut(s) 43, 58, 71, 74
BseYI CCCAGC 1 cut(s) 52
Bsh1236I CGCG 1 cut(s) 346
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 2 cut(s) 276, 367
BshNI GGYRCC 1 cut(s) 645
BsiEI CGRYCG 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 283
BsiSI CCGG 1 cut(s) 157
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 3 cut(s) 197, 310, 703
BsmAI GTCTC 2 cut(s) 225, 965
BsmFI GGGAC 1 cut(s) 314
BsnI GGCC 2 cut(s) 276, 367
Bso31I GGTCTC 1 cut(s) 225
Bsp1286I GDGCHC 2 cut(s) 283, 467
Bsp143I GATC 2 cut(s) 193, 934
BspACI CCGC 1 cut(s) 326
BspANI GGCC 2 cut(s) 276, 367
BspCNI CTCAG 4 cut(s) 88, 497, 643, 922
BspFNI CGCG 1 cut(s) 346
BspLI GGNNCC 3 cut(s) 302, 647, 1056
BspMAI CTGCAG 2 cut(s) 61, 1012
BspPI GGATC 1 cut(s) 942
BspT107I GGYRCC 1 cut(s) 645
BspTNI GGTCTC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 238
BsrFI RCCGGY 1 cut(s) 156
BssAI RCCGGY 1 cut(s) 156
BssECI CCNNGG 4 cut(s) 111, 184, 297, 1058
BssMI GATC 2 cut(s) 193, 934
BssT1I CCWWGG 3 cut(s) 111, 184, 1058
Bst2UI CCWGG 4 cut(s) 298, 311, 698, 914
Bst4CI ACNGT 1 cut(s) 851
Bst6I CTCTTC 2 cut(s) 407, 1030
BstAPI GCANNNNNTGC 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 69, 823
BstDEI CTNAG 4 cut(s) 75, 484, 651, 930
BstENI CCTNNNNNAGG 1 cut(s) 701
BstF5I GGATG 6 cut(s) 14, 238, 558, 639, 952, 997
BstFNI CGCG 1 cut(s) 346
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 2 cut(s) 196, 937
BstMAI GTCTC 2 cut(s) 225, 965
BstMBI GATC 2 cut(s) 193, 934
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 3 cut(s) 62, 68, 71
BstNI CCWGG 4 cut(s) 298, 311, 698, 914
BstSCI CCNGG 4 cut(s) 296, 309, 696, 912
BstSFI CTRYAG 2 cut(s) 57, 1008
BstSLI GKGCMC 2 cut(s) 283, 467
BstUI CGCG 1 cut(s) 346
BstV1I GCAGC 4 cut(s) 43, 58, 71, 74
BstV2I GAAGAC 1 cut(s) 194
BstX2I RGATCY 2 cut(s) 193, 934
BstYI RGATCY 2 cut(s) 193, 934
BstZI CGGCCG 1 cut(s) 274
BsuI GTATCC 1 cut(s) 304
BsuRI GGCC 2 cut(s) 276, 367
BtsCI GGATG 6 cut(s) 14, 238, 558, 639, 952, 997
Cac8I GCNNGC 2 cut(s) 69, 823
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 156
Cfr13I GGNCC 2 cut(s) 188, 301
CviAII CATG 1 cut(s) 586
DdeI CTNAG 4 cut(s) 75, 484, 651, 930
DpnI GATC 2 cut(s) 195, 936
DpnII GATC 2 cut(s) 193, 934
EaeI YGGCCR 1 cut(s) 274
EagI CGGCCG 1 cut(s) 274
Eam1104I CTCTTC 2 cut(s) 407, 1030
EarI CTCTTC 2 cut(s) 407, 1030
EclXI CGGCCG 1 cut(s) 274
Eco130I CCWWGG 3 cut(s) 111, 184, 1058
Eco147I AGGCCT 1 cut(s) 367
Eco31I GGTCTC 1 cut(s) 225
Eco47I GGWCC 2 cut(s) 188, 301
Eco47III AGCGCT 1 cut(s) 66
Eco52I CGGCCG 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 431
EcoNI CCTNNNNNAGG 1 cut(s) 701
EcoRII CCWGG 4 cut(s) 296, 309, 696, 912
EcoT14I CCWWGG 3 cut(s) 111, 184, 1058
EcoT22I ATGCAT 1 cut(s) 16
ErhI CCWWGG 3 cut(s) 111, 184, 1058
FaeI CATG 1 cut(s) 589
FaiI YATR 5 cut(s) 140, 587, 663, 711, 900
FalI AAGNNNNNCTT 2 cut(s) 810, 842
FaqI GGGAC 1 cut(s) 314
FatI CATG 1 cut(s) 585
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 4 cut(s) 57, 60, 63, 72
FokI GGATG 5 cut(s) 225, 565, 646, 959, 1004
Fsp4HI GCNGC 4 cut(s) 57, 60, 63, 72
FspBI CTAG 3 cut(s) 161, 548, 837
GlaI GCGC 1 cut(s) 66
GluI GCNGC 4 cut(s) 57, 60, 63, 72
GsaI CCCAGC 1 cut(s) 56
GsuI CTGGAG 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 2 cut(s) 276, 367
HapII CCGG 1 cut(s) 157
HhaI GCGC 1 cut(s) 67
Hin1II CATG 1 cut(s) 589
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HinfI GANTC 7 cut(s) 80, 107, 388, 406, 500, 686, 926
HpaII CCGG 1 cut(s) 157
HphI GGTGA 8 cut(s) 146, 173, 197, 547, 766, 869, 968, 1007
Hpy166II GTNNAC 4 cut(s) 181, 281, 361, 725
Hpy188I TCNGA 7 cut(s) 106, 396, 405, 411, 487, 931, 1024
Hpy188III TCNNGA 6 cut(s) 77, 127, 191, 242, 253, 455
Hpy8I GTNNAC 4 cut(s) 181, 281, 361, 725
HpyAV CCTTC 2 cut(s) 391, 1025
HpyCH4III ACNGT 1 cut(s) 851
HpyCH4V TGCA 5 cut(s) 14, 59, 231, 281, 1010
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 68, 71
HpyF3I CTNAG 4 cut(s) 75, 484, 651, 930
Hsp92II CATG 1 cut(s) 589
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 2 cut(s) 193, 934
LmnI GCTCC 1 cut(s) 1054
Lsp1109I GCAGC 4 cut(s) 43, 58, 71, 74
LweI GCATC 2 cut(s) 23, 1003
MaeI CTAG 3 cut(s) 161, 548, 837
MalI GATC 2 cut(s) 195, 936
MboI GATC 2 cut(s) 193, 934
MboII GAAGA 7 cut(s) 138, 194, 383, 424, 751, 887, 1047
MfeI CAATTG 1 cut(s) 504
MflI RGATCY 2 cut(s) 193, 934
MhlI GDGCHC 2 cut(s) 283, 467
MluCI AATT 7 cut(s) 211, 248, 428, 450, 488, 504, 979
MlyI GAGTC 3 cut(s) 101, 509, 935
Mph1103I ATGCAT 1 cut(s) 16
MseI TTAA 2 cut(s) 575, 828
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 4 cut(s) 298, 311, 698, 914
MunI CAATTG 1 cut(s) 504
MvaI CCWGG 4 cut(s) 298, 311, 698, 914
MvnI CGCG 1 cut(s) 346
MwoI GCNNNNNNNGC 3 cut(s) 62, 68, 71
NdeII GATC 2 cut(s) 193, 934
NlaIII CATG 1 cut(s) 589
NlaIV GGNNCC 3 cut(s) 302, 647, 1056
NsiI ATGCAT 1 cut(s) 16
PceI AGGCCT 1 cut(s) 367
PfeI GAWTC 4 cut(s) 80, 388, 406, 686
PflMI CCANNNNNTGG 2 cut(s) 197, 310
PfoI TCCNGGA 1 cut(s) 912
PkrI GCNGC 4 cut(s) 58, 61, 64, 73
PleI GAGTC 3 cut(s) 101, 508, 934
PpsI GAGTC 3 cut(s) 101, 508, 934
PshBI ATTAAT 1 cut(s) 575
Psp6I CCWGG 4 cut(s) 296, 309, 696, 912
PspFI CCCAGC 1 cut(s) 52
PspGI CCWGG 4 cut(s) 296, 309, 696, 912
PspN4I GGNNCC 3 cut(s) 302, 647, 1056
PspPI GGNCC 2 cut(s) 188, 301
PstI CTGCAG 2 cut(s) 61, 1012
PsuI RGATCY 2 cut(s) 193, 934
PvuII CAGCTG 1 cut(s) 56
SaqAI TTAA 2 cut(s) 575, 828
SatI GCNGC 4 cut(s) 57, 60, 63, 72
Sau3AI GATC 2 cut(s) 193, 934
Sau96I GGNCC 2 cut(s) 188, 301
SchI GAGTC 3 cut(s) 101, 509, 935
ScrFI CCNGG 4 cut(s) 298, 311, 698, 914
SduI GDGCHC 2 cut(s) 283, 467
SfaNI GCATC 2 cut(s) 23, 1003
SfcI CTRYAG 2 cut(s) 57, 1008
SinI GGWCC 2 cut(s) 188, 301
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 7 cut(s) 211, 248, 428, 450, 488, 504, 979
SseBI AGGCCT 1 cut(s) 367
SsiI CCGC 1 cut(s) 326
SspMI CTAG 3 cut(s) 161, 548, 837
StuI AGGCCT 1 cut(s) 367
StyD4I CCNGG 4 cut(s) 296, 309, 696, 912
StyI CCWWGG 3 cut(s) 111, 184, 1058
TaaI ACNGT 1 cut(s) 851
TaqII GACCGA 1 cut(s) 207
TasI AATT 7 cut(s) 211, 248, 428, 450, 488, 504, 979
TfiI GAWTC 4 cut(s) 80, 388, 406, 686
Tru1I TTAA 2 cut(s) 575, 828
Tru9I TTAA 2 cut(s) 575, 828
TseI GCWGC 4 cut(s) 56, 59, 62, 71
TspDTI ATGAA 1 cut(s) 888
TspGWI ACGGA 1 cut(s) 32
Van91I CCANNNNNTGG 2 cut(s) 197, 310
VneI GTGCAC 1 cut(s) 279
VpaK11BI GGWCC 2 cut(s) 188, 301
VspI ATTAAT 1 cut(s) 575
XagI CCTNNNNNAGG 1 cut(s) 701
XapI RAATTY 3 cut(s) 248, 428, 450
XmiI GTMKAC 1 cut(s) 360
XspI CTAG 3 cut(s) 161, 548, 837
Zsp2I ATGCAT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.