Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006200.1

Orthogroup ID

OG0007214

Physical Location & Seq

Genomic Coordinates Reverse (-)

48447 .. 48927

Gene Structure 481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006200.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atgatttcaaagtcctcttcatcatctcatcctagtcgtggatcacagatctctatagaggaggaactgaaaagggcactggcaaccgagagggaaaaacgagcagccgcagcagagcggagaatggctgcagctgcagcccttagtgctcaaggtaatagcaacactccacaacccaaaactggggaagctggtgaaggtgccgatggtggttgtggctatggtccaagtgatgctaatggcggtggtgccagggatggtggtggtgggggtggtggtcgtgttagtggcaaattagtgatgataattgtggtggtcacaacgatggctctcaagtggtggcagtggcgacgcagacgacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

12.51

Weight (kDa)

10.34

Isoelectric Point (pI)

60.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01930
fragaria_vesca	FvH4_7g12110 FvH4_7g12110 FvH4_7g12110 FvH4_7g12110 FvH4_7g12110 FvH4_7g12110 FvH4_7g12110
malus_domestica	MD02G1201200.v1.1
prunus_persica	Prupe.2G147600_v2.0.a1 Prupe.2G147600_v2.0.a1
pyrus_communis	pycom02g16460
rosa_chinensis	RchiOBHm_Chr1g0350861
rosa_laevigata	RLG00000028448
rosa_multiflora	Rmu_sc0006200.1_g000008 Rmu_sc0006200.1_g000010 Rmu_sc0008251.1_g000001 Rmu_sc0014584.1_g000013
rosa_roxburghii	Rroxscaffold_4G00304460
rosa_rugosa	Rorug01G0214700
rosa_samantha	Rh1AG229100 Rh1BG199100 Rh1CG213900 Rh1DG227000
rosa_wichuraiana	Rw1G019850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	200, 248
AccBSI	CCGCTC	1 cut(s)	118
AciI	CCGC	3 cut(s)	108, 118, 243
AclWI	GGATC	1 cut(s)	49
AfiI	CCNNNNNNNGG	3 cut(s)	38, 182, 183
AgsI	TTSAA	1 cut(s)	9
AjnI	CCWGG	1 cut(s)	251
AluBI	AGCT	2 cut(s)	134, 191
AluI	AGCT	2 cut(s)	134, 191
Alw21I	GWGCWC	1 cut(s)	151
AlwI	GGATC	1 cut(s)	49
ApeKI	GCWGC	6 cut(s)	104, 110, 128, 131, 134, 137
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	79
BanI	GGYRCC	2 cut(s)	200, 248
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	6 cut(s)	115, 116, 121, 122, 143, 149
BccI	CCATC	3 cut(s)	200, 251, 319
BciT130I	CCWGG	1 cut(s)	253
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	3 cut(s)	54, 129, 135
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	7 cut(s)	105, 108, 111, 129, 132, 135, 138
BlsI	GCNGC	7 cut(s)	106, 109, 112, 130, 133, 136, 139
Bme1390I	CCNGG	1 cut(s)	253
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	2 cut(s)	202, 250
BmrFI	CCNGG	1 cut(s)	253
BmrI	ACTGGG	1 cut(s)	192
BmsI	GCATC	1 cut(s)	223
BmuI	ACTGGG	1 cut(s)	192
BpuEI	CTTGAG	2 cut(s)	135, 317
BsaJI	CCNNGG	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 182, 183
Bse1I	ACTGG	2 cut(s)	84, 187
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	2 cut(s)	28, 262
BseLI	CCNNNNNNNGG	3 cut(s)	38, 182, 183
BseNI	ACTGG	2 cut(s)	84, 187
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	79
BseXI	GCAGC	6 cut(s)	115, 116, 121, 122, 143, 149
BshNI	GGYRCC	2 cut(s)	200, 248
BsiHKAI	GWGCWC	1 cut(s)	151
BslI	CCNNNNNNNGG	3 cut(s)	38, 182, 183
Bsp1286I	GDGCHC	2 cut(s)	79, 151
Bsp143I	GATC	2 cut(s)	41, 48
BspACI	CCGC	3 cut(s)	108, 118, 243
BspLI	GGNNCC	2 cut(s)	202, 250
BspMAI	CTGCAG	2 cut(s)	133, 139
BspPI	GGATC	1 cut(s)	49
BspT107I	GGYRCC	2 cut(s)	200, 248
BsrBI	CCGCTC	1 cut(s)	118
BsrI	ACTGG	2 cut(s)	84, 187
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	2 cut(s)	41, 48
Bst2UI	CCWGG	1 cut(s)	253
Bst6I	CTCTTC	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	28, 262
BstKTI	GATC	2 cut(s)	44, 51
BstMBI	GATC	2 cut(s)	41, 48
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 134, 137, 146
BstNI	CCWGG	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	251
BstSFI	CTRYAG	3 cut(s)	54, 129, 135
BstSLI	GKGCMC	1 cut(s)	79
BstV1I	GCAGC	6 cut(s)	115, 116, 121, 122, 143, 149
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	28, 262
BtsI	GCAGTG	1 cut(s)	350
BtsIMutI	CAGTG	2 cut(s)	77, 350
Cfr13I	GGNCC	1 cut(s)	224
CseI	GACGC	1 cut(s)	360
CviJI	RGCY	7 cut(s)	107, 128, 134, 140, 191, 219, 329
CviKI_1	RGCY	7 cut(s)	107, 128, 134, 140, 191, 219, 329
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	2 cut(s)	43, 50
DpnII	GATC	2 cut(s)	41, 48
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	251
FaiI	YATR	2 cut(s)	56, 222
Fnu4HI	GCNGC	7 cut(s)	105, 108, 111, 129, 132, 135, 138
FokI	GGATG	2 cut(s)	15, 269
Fsp4HI	GCNGC	7 cut(s)	105, 108, 111, 129, 132, 135, 138
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	7 cut(s)	105, 108, 111, 129, 132, 135, 138
HgaI	GACGC	1 cut(s)	360
HphI	GGTGA	1 cut(s)	206
Hpy99I	CGWCG	1 cut(s)	354
HpyAV	CCTTC	1 cut(s)	191
HpyCH4V	TGCA	2 cut(s)	131, 137
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 134, 137, 146
HpyF3I	CTNAG	1 cut(s)	143
Kzo9I	GATC	2 cut(s)	41, 48
LpnPI	CCDG	5 cut(s)	65, 168, 177, 238, 265
Lsp1109I	GCAGC	6 cut(s)	115, 116, 121, 122, 143, 149
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	2 cut(s)	43, 50
MbiI	CCGCTC	1 cut(s)	118
MboI	GATC	2 cut(s)	41, 48
MboII	GAAGA	1 cut(s)	9
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	2 cut(s)	79, 151
MluCI	AATT	2 cut(s)	293, 306
MnlI	CCTC	4 cut(s)	25, 52, 55, 84
MslI	CAYNNNNRTG	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	253
MwoI	GCNNNNNNNGC	4 cut(s)	110, 134, 137, 146
NdeII	GATC	2 cut(s)	41, 48
NlaIV	GGNNCC	2 cut(s)	202, 250
NmuCI	GTSAC	1 cut(s)	316
PkrI	GCNGC	7 cut(s)	106, 109, 112, 130, 133, 136, 139
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	2 cut(s)	202, 250
PspPI	GGNCC	1 cut(s)	224
PstI	CTGCAG	2 cut(s)	133, 139
PsuI	RGATCY	1 cut(s)	48
PvuII	CAGCTG	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	323
SatI	GCNGC	7 cut(s)	105, 108, 111, 129, 132, 135, 138
Sau3AI	GATC	2 cut(s)	41, 48
Sau96I	GGNCC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	253
SduI	GDGCHC	2 cut(s)	79, 151
SetI	ASST	4 cut(s)	136, 157, 193, 202
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	3 cut(s)	54, 129, 135
SinI	GGWCC	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	2 cut(s)	150, 332
SmoI	CTYRAG	2 cut(s)	150, 332
Sse9I	AATT	2 cut(s)	293, 306
SsiI	CCGC	3 cut(s)	108, 118, 243
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	251
TasI	AATT	2 cut(s)	293, 306
TauI	GCSGC	1 cut(s)	110
TscAI	CASTG	2 cut(s)	84, 350
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	6 cut(s)	104, 110, 128, 131, 134, 137
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	9
TspRI	CASTG	2 cut(s)	84, 350
VpaK11BI	GGWCC	1 cut(s)	224
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.