Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014584.1

Orthogroup ID

OG0007214

Physical Location & Seq

Genomic Coordinates Forward (+)

43261 .. 45332

Gene Structure 2072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014584.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atgaaggaagctcggcggatatatgaacagttgacacaagtctcttatgaacaagaggagaatgaagctcctttagttaccaaaaaggaattgccgtctagttcaggaattgaaaatgatatcatctcaagcatggcgaaagtcaacattgttgagccttttgttgagcctagtacagaagcttgctcaagtactagagagtccaatgaactccctatatcaagtgagagtagtaatgaggttaagggttcgtcaacacctttgcatgaggcagcacagtctgggaatgctctcaaggttttggaactcttggaacagggtttggatccttgtgccagagatgaaaggggacagactccatacacggtagcaaacgaaaaggaggtcagaaacacatttagacggttcatggcctcaaatctagataagtgggattggaatgctgctaaggtacctagtgcattgacaaaggagatggaggaatctcaagctgctaagcaggctgaaaaagaagcgaaaaggaaagctaaagcaaaagaattgaagaaactacgcaaagaaaaagaaaagaaagctcaggctgaggctgctgcttccaagaatacttcgaccattacaaagtcctcttcatcatctcagcccagtcgtgcatcacagatctctaaagaggaggaactgaaaagggccctggtagccgagagggaaaaacgagcagccgcagccgagcagagaatggctgcagctgcagcccttagtgctcaaggtaatagcaccactccacaacccaaaactggggaagctagtgaaattaactgctcttgttgtaatgtgtctctggctggtaaagttccttttcataggtataactacaaatactgcagcacaacttgcatgcatgtgcacaaagagtttcttgaggaagatggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

309

Amino Acids

34.08

Weight (kDa)

6.93

Isoelectric Point (pI)

56.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01930
fragaria_vesca	FvH4_7g12110 FvH4_7g12110 FvH4_7g12110 FvH4_7g12110 FvH4_7g12110 FvH4_7g12110 FvH4_7g12110
malus_domestica	MD02G1201200.v1.1
prunus_persica	Prupe.2G147600_v2.0.a1 Prupe.2G147600_v2.0.a1
pyrus_communis	pycom02g16460
rosa_chinensis	RchiOBHm_Chr1g0350861
rosa_laevigata	RLG00000028448
rosa_multiflora	Rmu_sc0006200.1_g000008 Rmu_sc0006200.1_g000010 Rmu_sc0008251.1_g000001 Rmu_sc0014584.1_g000013
rosa_roxburghii	Rroxscaffold_4G00304460
rosa_rugosa	Rorug01G0214700
rosa_samantha	Rh1AG229100 Rh1BG199100 Rh1CG213900 Rh1DG227000
rosa_wichuraiana	Rw1G019850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	451
AccB1I	GGYRCC	1 cut(s)	451
AciI	CCGC	2 cut(s)	16, 717
AclWI	GGATC	2 cut(s)	320, 333
AfaI	GTAC	3 cut(s)	175, 193, 453
AfiI	CCNNNNNNNGG	2 cut(s)	791, 792
AgsI	TTSAA	2 cut(s)	113, 544
AjnI	CCWGG	1 cut(s)	687
AluBI	AGCT	8 cut(s)	11, 68, 182, 491, 527, 575, 743, 800
AluI	AGCT	8 cut(s)	11, 68, 182, 491, 527, 575, 743, 800
Alw21I	GWGCWC	2 cut(s)	760, 903
Alw26I	GTCTC	2 cut(s)	46, 837
Alw44I	GTGCAC	1 cut(s)	899
AlwI	GGATC	2 cut(s)	320, 333
AoxI	GGCC	2 cut(s)	411, 684
ApaI	GGGCCC	1 cut(s)	688
ApaLI	GTGCAC	1 cut(s)	899
ArsI	GACNNNNNNTTYG	2 cut(s)	369, 401
Asp718I	GGTACC	1 cut(s)	451
AspS9I	GGNCC	2 cut(s)	684, 685
BaeGI	GKGCMC	2 cut(s)	688, 903
BamHI	GGATCC	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	688
Bbv12I	GWGCWC	2 cut(s)	760, 903
BbvCI	CCTCAGC	1 cut(s)	582
BccI	CCATC	2 cut(s)	469, 917
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	689
BcoDI	GTCTC	2 cut(s)	46, 837
BfaI	CTAG	6 cut(s)	99, 171, 195, 422, 456, 801
BfmI	CTRYAG	3 cut(s)	738, 744, 877
BglII	AGATCT	1 cut(s)	657
BlpI	GCTNAGC	1 cut(s)	495
BmcAI	AGTACT	1 cut(s)	193
Bme1390I	CCNGG	1 cut(s)	689
BmgT120I	GGNCC	2 cut(s)	684, 685
BmiI	GGNNCC	3 cut(s)	327, 453, 686
BmrFI	CCNGG	1 cut(s)	689
BmrI	ACTGGG	2 cut(s)	636, 801
BmsI	GCATC	1 cut(s)	659
BmuI	ACTGGG	2 cut(s)	636, 801
BoxI	GACNNNNGTC	1 cut(s)	38
Bpu10I	CCTNAGC	3 cut(s)	447, 576, 582
Bpu1102I	GCTNAGC	1 cut(s)	495
BpuEI	CTTGAG	5 cut(s)	112, 172, 278, 471, 744
BsaJI	CCNNGG	1 cut(s)	687
Bsc4I	CCNNNNNNNGG	2 cut(s)	791, 792
Bse1I	ACTGG	2 cut(s)	642, 796
BseBI	CCWGG	1 cut(s)	689
BseDI	CCNNGG	1 cut(s)	687
BseLI	CCNNNNNNNGG	2 cut(s)	791, 792
BseMII	CTCAG	3 cut(s)	573, 590, 650
BseNI	ACTGG	2 cut(s)	642, 796
BseRI	GAGGAG	2 cut(s)	71, 683
BseSI	GKGCMC	2 cut(s)	688, 903
BshFI	GGCC	2 cut(s)	413, 686
BshNI	GGYRCC	1 cut(s)	451
BsiHKAI	GWGCWC	2 cut(s)	760, 903
BslFI	GGGAC	1 cut(s)	363
BslI	CCNNNNNNNGG	2 cut(s)	791, 792
BsmAI	GTCTC	2 cut(s)	46, 837
BsmFI	GGGAC	1 cut(s)	363
BsmI	GAATGC	2 cut(s)	292, 445
BsnI	GGCC	2 cut(s)	413, 686
Bsp120I	GGGCCC	1 cut(s)	684
Bsp1286I	GDGCHC	3 cut(s)	688, 760, 903
Bsp143I	GATC	2 cut(s)	325, 657
Bsp1720I	GCTNAGC	1 cut(s)	495
BspACI	CCGC	2 cut(s)	16, 717
BspANI	GGCC	2 cut(s)	413, 686
BspCNI	CTCAG	3 cut(s)	574, 589, 649
BspLI	GGNNCC	3 cut(s)	327, 453, 686
BspMAI	CTGCAG	3 cut(s)	742, 748, 881
BspPI	GGATC	2 cut(s)	320, 333
BspT107I	GGYRCC	1 cut(s)	451
BsrI	ACTGG	2 cut(s)	642, 796
BssECI	CCNNGG	1 cut(s)	687
BssMI	GATC	2 cut(s)	325, 657
Bst2UI	CCWGG	1 cut(s)	689
Bst4CI	ACNGT	4 cut(s)	30, 279, 367, 405
Bst6I	CTCTTC	1 cut(s)	631
BstAPI	GCANNNNNTGC	1 cut(s)	888
BstC8I	GCNNGC	3 cut(s)	184, 501, 893
BstDEI	CTNAG	6 cut(s)	447, 495, 576, 582, 636, 752
BstKTI	GATC	2 cut(s)	328, 660
BstMAI	GTCTC	2 cut(s)	46, 837
BstMBI	GATC	2 cut(s)	325, 657
BstMWI	GCNNNNNNNGC	8 cut(s)	500, 587, 692, 719, 743, 746, 755, 888
BstNI	CCWGG	1 cut(s)	689
BstNSI	RCATGY	2 cut(s)	895, 899
BstPAI	GACNNNNGTC	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	687
BstSFI	CTRYAG	3 cut(s)	738, 744, 877
BstSLI	GKGCMC	2 cut(s)	688, 903
BstX2I	RGATCY	2 cut(s)	325, 657
BstYI	RGATCY	2 cut(s)	325, 657
BsuRI	GGCC	2 cut(s)	413, 686
Cac8I	GCNNGC	3 cut(s)	184, 501, 893
Cfr13I	GGNCC	2 cut(s)	684, 685
Csp6I	GTAC	3 cut(s)	174, 192, 452
CviAII	CATG	5 cut(s)	133, 266, 409, 892, 896
CviQI	GTAC	3 cut(s)	174, 192, 452
DdeI	CTNAG	6 cut(s)	447, 495, 576, 582, 636, 752
DpnI	GATC	2 cut(s)	327, 659
DpnII	GATC	2 cut(s)	325, 657
Eam1104I	CTCTTC	1 cut(s)	631
EarI	CTCTTC	1 cut(s)	631
EciI	GGCGGA	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	688
Eco32I	GATATC	1 cut(s)	121
EcoO109I	RGGNCCY	2 cut(s)	684, 685
EcoRII	CCWGG	1 cut(s)	687
EcoRV	GATATC	1 cut(s)	121
EcoT22I	ATGCAT	1 cut(s)	897
EcoT38I	GRGCYC	1 cut(s)	688
FaeI	CATG	5 cut(s)	136, 269, 412, 895, 899
FalI	AAGNNNNNCTT	2 cut(s)	897, 929
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	5 cut(s)	132, 265, 408, 891, 895
FriOI	GRGCYC	1 cut(s)	688
FspBI	CTAG	6 cut(s)	99, 171, 195, 422, 456, 801
HaeIII	GGCC	2 cut(s)	413, 686
Hin1II	CATG	5 cut(s)	136, 269, 412, 895, 899
HincII	GTYRAC	3 cut(s)	33, 145, 255
HindII	GTYRAC	3 cut(s)	33, 145, 255
HindIII	AAGCTT	1 cut(s)	180
HinfI	GANTC	3 cut(s)	200, 355, 482
Hpy166II	GTNNAC	4 cut(s)	33, 145, 255, 901
Hpy188I	TCNGA	1 cut(s)	389
Hpy188III	TCNNGA	3 cut(s)	105, 422, 914
Hpy8I	GTNNAC	4 cut(s)	33, 145, 255, 901
HpyCH4III	ACNGT	4 cut(s)	30, 279, 367, 405
HpyCH4V	TGCA	9 cut(s)	265, 461, 650, 740, 746, 879, 891, 895, 901
HpyF10VI	GCNNNNNNNGC	8 cut(s)	500, 587, 692, 719, 743, 746, 755, 888
HpyF3I	CTNAG	6 cut(s)	447, 495, 576, 582, 636, 752
Hsp92II	CATG	5 cut(s)	136, 269, 412, 895, 899
KpnI	GGTACC	1 cut(s)	455
Kzo9I	GATC	2 cut(s)	325, 657
LmnI	GCTCC	1 cut(s)	73
LweI	GCATC	1 cut(s)	659
MaeI	CTAG	6 cut(s)	99, 171, 195, 422, 456, 801
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	2 cut(s)	327, 659
MboI	GATC	2 cut(s)	325, 657
MboII	GAAGA	2 cut(s)	556, 618
MflI	RGATCY	2 cut(s)	325, 657
MhlI	GDGCHC	3 cut(s)	688, 760, 903
MluCI	AATT	4 cut(s)	89, 108, 539, 807
MlyI	GAGTC	2 cut(s)	209, 349
Mph1103I	ATGCAT	1 cut(s)	897
MseI	TTAA	2 cut(s)	243, 810
MslI	CAYNNNNRTG	1 cut(s)	896
MspA1I	CMGCKG	1 cut(s)	743
MspR9I	CCNGG	1 cut(s)	689
Mva1269I	GAATGC	2 cut(s)	292, 445
MvaI	CCWGG	1 cut(s)	689
MwoI	GCNNNNNNNGC	8 cut(s)	500, 587, 692, 719, 743, 746, 755, 888
NdeII	GATC	2 cut(s)	325, 657
NlaIII	CATG	5 cut(s)	136, 269, 412, 895, 899
NlaIV	GGNNCC	3 cut(s)	327, 453, 686
NmeAIII	GCCGAG	2 cut(s)	721, 748
NsiI	ATGCAT	1 cut(s)	897
NspI	RCATGY	2 cut(s)	895, 899
PaeI	GCATGC	1 cut(s)	895
PctI	GAATGC	2 cut(s)	292, 445
PfeI	GAWTC	1 cut(s)	482
PleI	GAGTC	2 cut(s)	208, 349
PpsI	GAGTC	2 cut(s)	208, 349
PshAI	GACNNNNGTC	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	687
PspGI	CCWGG	1 cut(s)	687
PspN4I	GGNNCC	3 cut(s)	327, 453, 686
PspOMI	GGGCCC	1 cut(s)	684
PspPI	GGNCC	2 cut(s)	684, 685
PstI	CTGCAG	3 cut(s)	742, 748, 881
PsuI	RGATCY	2 cut(s)	325, 657
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	3 cut(s)	175, 193, 453
RsaNI	GTAC	3 cut(s)	174, 192, 452
RseI	CAYNNNNRTG	1 cut(s)	896
SaqAI	TTAA	2 cut(s)	243, 810
Sau3AI	GATC	2 cut(s)	325, 657
Sau96I	GGNCC	2 cut(s)	684, 685
ScaI	AGTACT	1 cut(s)	193
SchI	GAGTC	2 cut(s)	209, 349
ScrFI	CCNGG	1 cut(s)	689
SduI	GDGCHC	3 cut(s)	688, 760, 903
SfaNI	GCATC	1 cut(s)	659
SfcI	CTRYAG	3 cut(s)	738, 744, 877
SmiMI	CAYNNNNRTG	1 cut(s)	896
SmlI	CTYRAG	6 cut(s)	127, 187, 293, 486, 759, 914
SmoI	CTYRAG	6 cut(s)	127, 187, 293, 486, 759, 914
SphI	GCATGC	1 cut(s)	895
Sse9I	AATT	4 cut(s)	89, 108, 539, 807
SsiI	CCGC	2 cut(s)	16, 717
SspMI	CTAG	6 cut(s)	99, 171, 195, 422, 456, 801
StyD4I	CCNGG	1 cut(s)	687
TaaI	ACNGT	4 cut(s)	30, 279, 367, 405
TaqI	TCGA	1 cut(s)	608
TasI	AATT	4 cut(s)	89, 108, 539, 807
TatI	WGTACW	2 cut(s)	173, 191
TauI	GCSGC	1 cut(s)	719
TfiI	GAWTC	1 cut(s)	482
Tru1I	TTAA	2 cut(s)	243, 810
Tru9I	TTAA	2 cut(s)	243, 810
TspDTI	ATGAA	9 cut(s)	17, 39, 63, 78, 222, 357, 397, 618, 845
VneI	GTGCAC	1 cut(s)	899
XbaI	TCTAGA	1 cut(s)	421
XceI	RCATGY	2 cut(s)	895, 899
XspI	CTAG	6 cut(s)	99, 171, 195, 422, 456, 801
ZrmI	AGTACT	1 cut(s)	193
Zsp2I	ATGCAT	1 cut(s)	897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.