Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006200.1

Orthogroup ID

OG0007214

Physical Location & Seq

Genomic Coordinates Reverse (-)

56156 .. 60395

Gene Structure 4240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006200.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1725 bp

atgtatgaggaatattggaatttacaagtgaagctaagccttgctggaaagaatattgtgaaggaggaggactttgatgagttaacgtctgattcttttaaagactttgatgtctcgagtatatcaggatcagaggatgatgaacctgaaaaagttggccctttcaagctttcaagggcaactgctaggcagaaattactcatccaccttcagacgggagaaagaatttcgatttggaagtgtttgattacaaatgaatctggacctgaaggtaatttgtcatgtgatgaattgttggggagattgaacacggtggttcatgagcctagagataatgcctgttttagagttgtgttgcttgcaagtggtgggcactttgctggttgtgtgtttgatggtagcaagattgtagctcacaagactttccacaggtatgtcgtaagggccaagtctggaaaaaaacagtcatccaatgatgcatctggaaggtttgctcattccgctggagcttctcttcgtcgccataatgaacttgcattgaaaaaggatattcaagagctacttgctgcatggaagccttattttgatgcttcgtcttgcgtttttgtttatgctccttctagtaatcatcagctgctatctaatagggagacaccgtattttagtcatcagaaagtccgaaatattccaatccctattcggagacctactatgaaggaagctcggcggatatatgaacagttgacacaagtctcttatgaacaagaggagaatgaagctcctttagttaccaaaaaggaattgccgtctagttcaggaattgaaaatgatatcatctcaagcatggcgaaagtcaacattgttgagccttttgttgagcctagtacagaagcttgctcaagtactagagagtccaatgaactccctatatcaagtgagagtagtaatgaggttaagggttcgtcaacacctttgcatgaggcagcacagtctgggaatgctctcaaggttttggaactcttggaacagggtttggatccttgtgccagagatgaaaggggacagactccatacacggtagcaaacgaaaaggaggtcagaaacacatttagacggttcatggcctcaaatctagataagtgggattggaatgctgctaaggtacctagtgcattgacaaaggagatggaggaatctcaagctgctaagcaggctgaaaaagaagcgaaaaggaaagctaaagcaaaagaattgaagaaactacgcaaagaaaaagaaaagaaagctcaggctgaggctgctgcttccaagaatacttcgaccattacaaagtcctcttcatcatctcagcccagtcgtgcatcacagatctctaaagaggaggaactgaaaagggccctggtagccgagagggaaaaacgagcagccgcagccgagcagagaatggctgcagctgcagcccttagtgctcaaggtaatagcaccactccacaacccaaaactggggaagctagtgaaattaactgctcttgttgtaatgtgtctctggctggatctgaaggtggcgatggtggctgtggctatggtccaagtgatgctgatggcggtggtaccagggatggtgggggtggtggtggtgttagtggcaagttagtgatggtaattgtggtggtcacaacaatagctctcgagtggtggcagtggcgacgcagacgacaaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

574

Amino Acids

63.0

Weight (kDa)

8.33

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01930
fragaria_vesca	FvH4_7g12110 FvH4_7g12110 FvH4_7g12110 FvH4_7g12110 FvH4_7g12110 FvH4_7g12110 FvH4_7g12110
malus_domestica	MD02G1201200.v1.1
prunus_persica	Prupe.2G147600_v2.0.a1 Prupe.2G147600_v2.0.a1
pyrus_communis	pycom02g16460
rosa_chinensis	RchiOBHm_Chr1g0350861
rosa_laevigata	RLG00000028448
rosa_multiflora	Rmu_sc0006200.1_g000008 Rmu_sc0006200.1_g000010 Rmu_sc0008251.1_g000001 Rmu_sc0014584.1_g000013
rosa_roxburghii	Rroxscaffold_4G00304460
rosa_rugosa	Rorug01G0214700
rosa_samantha	Rh1AG229100 Rh1BG199100 Rh1CG213900 Rh1DG227000
rosa_wichuraiana	Rw1G019850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
Acc65I	GGTACC	2 cut(s)	1162, 1610
AccB1I	GGYRCC	2 cut(s)	1162, 1610
AciI	CCGC	4 cut(s)	501, 727, 1428, 1605
AclWI	GGATC	4 cut(s)	136, 1031, 1044, 1561
AcsI	RAATTY	2 cut(s)	19, 225
AcuI	CTGAAG	3 cut(s)	194, 288, 1578
AfaI	GTAC	4 cut(s)	886, 904, 1164, 1612
AfiI	CCNNNNNNNGG	3 cut(s)	214, 1502, 1503
AgsI	TTSAA	7 cut(s)	166, 174, 307, 541, 554, 824, 1255
AjnI	CCWGG	2 cut(s)	1398, 1613
AjuI	GAANNNNNNNTTGG	2 cut(s)	217, 249
Alw21I	GWGCWC	1 cut(s)	1471
Alw26I	GTCTC	5 cut(s)	118, 644, 697, 757, 1548
AlwI	GGATC	4 cut(s)	136, 1031, 1044, 1561
Ama87I	CYCGRG	2 cut(s)	115, 1688
AoxI	GGCC	4 cut(s)	157, 444, 1122, 1395
ApaI	GGGCCC	1 cut(s)	1399
ApoI	RAATTY	2 cut(s)	19, 225
ArsI	GACNNNNNNTTYG	2 cut(s)	1080, 1112
Asp718I	GGTACC	2 cut(s)	1162, 1610
AspS9I	GGNCC	6 cut(s)	158, 263, 444, 1395, 1396, 1586
AvaI	CYCGRG	2 cut(s)	115, 1688
AvaII	GGWCC	2 cut(s)	263, 1586
BaeGI	GKGCMC	2 cut(s)	375, 1399
BamHI	GGATCC	1 cut(s)	1036
BanI	GGYRCC	2 cut(s)	1162, 1610
BanII	GRGCYC	1 cut(s)	1399
Bbv12I	GWGCWC	1 cut(s)	1471
BbvCI	CCTCAGC	1 cut(s)	1293
BccI	CCATC	6 cut(s)	389, 1180, 1562, 1595, 1613, 1651
BceAI	ACGGC	1 cut(s)	790
BciT130I	CCWGG	2 cut(s)	1400, 1615
BcoDI	GTCTC	5 cut(s)	118, 644, 697, 757, 1548
BfaI	CTAG	9 cut(s)	186, 327, 621, 810, 882, 906, 1133, 1167, 1512
BfmI	CTRYAG	2 cut(s)	1449, 1455
BglII	AGATCT	1 cut(s)	1368
BlpI	GCTNAGC	2 cut(s)	35, 1206
BmcAI	AGTACT	1 cut(s)	904
Bme1390I	CCNGG	2 cut(s)	1400, 1615
Bme18I	GGWCC	2 cut(s)	263, 1586
BmeT110I	CYCGRG	2 cut(s)	115, 1688
BmgT120I	GGNCC	6 cut(s)	158, 263, 444, 1395, 1396, 1586
BmiI	GGNNCC	4 cut(s)	1038, 1164, 1397, 1612
BmrFI	CCNGG	2 cut(s)	1400, 1615
BmrI	ACTGGG	2 cut(s)	1347, 1512
BmsI	GCATC	5 cut(s)	466, 488, 577, 1370, 1585
BmuI	ACTGGG	2 cut(s)	1347, 1512
BoxI	GACNNNNGTC	1 cut(s)	749
BpmI	CTGGAG	1 cut(s)	525
Bpu10I	CCTNAGC	3 cut(s)	1158, 1287, 1293
Bpu1102I	GCTNAGC	2 cut(s)	35, 1206
BpuEI	CTTGAG	5 cut(s)	823, 883, 989, 1182, 1455
BsaI	GGTCTC	1 cut(s)	697
BsaJI	CCNNGG	2 cut(s)	1398, 1614
BsaXI	ACNNNNNCTCC	2 cut(s)	641, 671
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 1502, 1503
Bse1I	ACTGG	2 cut(s)	1353, 1507
BseBI	CCWGG	2 cut(s)	1400, 1615
BseDI	CCNNGG	2 cut(s)	1398, 1614
BseGI	GGATG	4 cut(s)	142, 201, 467, 1624
BseLI	CCNNNNNNNGG	3 cut(s)	214, 1502, 1503
BseMII	CTCAG	3 cut(s)	1284, 1301, 1361
BseNI	ACTGG	2 cut(s)	1353, 1507
BseRI	GAGGAG	3 cut(s)	80, 782, 1394
BseSI	GKGCMC	2 cut(s)	375, 1399
BshFI	GGCC	4 cut(s)	159, 446, 1124, 1397
BshNI	GGYRCC	2 cut(s)	1162, 1610
BsiHKAI	GWGCWC	1 cut(s)	1471
BsiHKCI	CYCGRG	2 cut(s)	115, 1688
BslFI	GGGAC	1 cut(s)	1074
BslI	CCNNNNNNNGG	3 cut(s)	214, 1502, 1503
BsmAI	GTCTC	5 cut(s)	118, 644, 697, 757, 1548
BsmFI	GGGAC	1 cut(s)	1074
BsmI	GAATGC	2 cut(s)	1003, 1156
BsnI	GGCC	4 cut(s)	159, 446, 1124, 1397
Bso31I	GGTCTC	1 cut(s)	697
BsoBI	CYCGRG	2 cut(s)	115, 1688
Bsp120I	GGGCCC	1 cut(s)	1395
Bsp1286I	GDGCHC	3 cut(s)	375, 1399, 1471
Bsp143I	GATC	4 cut(s)	128, 1036, 1368, 1553
Bsp1720I	GCTNAGC	2 cut(s)	35, 1206
BspACI	CCGC	4 cut(s)	501, 727, 1428, 1605
BspANI	GGCC	4 cut(s)	159, 446, 1124, 1397
BspCNI	CTCAG	3 cut(s)	1285, 1300, 1360
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	4 cut(s)	1038, 1164, 1397, 1612
BspMAI	CTGCAG	2 cut(s)	1453, 1459
BspPI	GGATC	4 cut(s)	136, 1031, 1044, 1561
BspT107I	GGYRCC	2 cut(s)	1162, 1610
BspTNI	GGTCTC	1 cut(s)	697
BsrI	ACTGG	2 cut(s)	1353, 1507
BssECI	CCNNGG	2 cut(s)	1398, 1614
BssMI	GATC	4 cut(s)	128, 1036, 1368, 1553
Bst2UI	CCWGG	2 cut(s)	1400, 1615
Bst4CI	ACNGT	7 cut(s)	313, 465, 657, 741, 990, 1078, 1116
Bst6I	CTCTTC	2 cut(s)	519, 1342
BstC8I	GCNNGC	3 cut(s)	360, 895, 1212
BstDEI	CTNAG	7 cut(s)	35, 1158, 1206, 1287, 1293, 1347, 1463
BstF5I	GGATG	4 cut(s)	142, 201, 467, 1624
BstKTI	GATC	4 cut(s)	131, 1039, 1371, 1556
BstMAI	GTCTC	5 cut(s)	118, 644, 697, 757, 1548
BstMBI	GATC	4 cut(s)	128, 1036, 1368, 1553
BstMWI	GCNNNNNNNGC	9 cut(s)	500, 1211, 1298, 1403, 1430, 1454, 1457, 1466, 1572
BstNI	CCWGG	2 cut(s)	1400, 1615
BstPAI	GACNNNNGTC	1 cut(s)	749
BstSCI	CCNGG	2 cut(s)	1398, 1613
BstSFI	CTRYAG	2 cut(s)	1449, 1455
BstSLI	GKGCMC	2 cut(s)	375, 1399
BstX2I	RGATCY	3 cut(s)	1036, 1368, 1553
BstYI	RGATCY	3 cut(s)	1036, 1368, 1553
BsuRI	GGCC	4 cut(s)	159, 446, 1124, 1397
BtgZI	GCGATG	1 cut(s)	1581
BtsCI	GGATG	4 cut(s)	142, 201, 467, 1624
BtsI	GCAGTG	1 cut(s)	1706
BtsIMutI	CAGTG	1 cut(s)	1706
Cac8I	GCNNGC	3 cut(s)	360, 895, 1212
CciI	TCATGA	1 cut(s)	319
Cfr13I	GGNCC	6 cut(s)	158, 263, 444, 1395, 1396, 1586
CseI	GACGC	1 cut(s)	1716
Csp6I	GTAC	4 cut(s)	885, 903, 1163, 1611
CviAII	CATG	6 cut(s)	282, 320, 570, 844, 977, 1120
CviQI	GTAC	4 cut(s)	885, 903, 1163, 1611
DdeI	CTNAG	7 cut(s)	35, 1158, 1206, 1287, 1293, 1347, 1463
DpnI	GATC	4 cut(s)	130, 1038, 1370, 1555
DpnII	GATC	4 cut(s)	128, 1036, 1368, 1553
DraI	TTTAAA	1 cut(s)	100
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
Eam1104I	CTCTTC	2 cut(s)	519, 1342
EarI	CTCTTC	2 cut(s)	519, 1342
EciI	GGCGGA	1 cut(s)	742
Eco24I	GRGCYC	1 cut(s)	1399
Eco31I	GGTCTC	1 cut(s)	697
Eco32I	GATATC	1 cut(s)	832
Eco47I	GGWCC	2 cut(s)	263, 1586
Eco57I	CTGAAG	3 cut(s)	194, 288, 1578
Eco88I	CYCGRG	2 cut(s)	115, 1688
EcoO109I	RGGNCCY	2 cut(s)	1395, 1396
EcoRII	CCWGG	2 cut(s)	1398, 1613
EcoRV	GATATC	1 cut(s)	832
EcoT22I	ATGCAT	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	1399
FaeI	CATG	6 cut(s)	285, 323, 573, 847, 980, 1123
FalI	AAGNNNNNCTT	2 cut(s)	546, 578
FaqI	GGGAC	1 cut(s)	1074
FatI	CATG	6 cut(s)	281, 319, 569, 843, 976, 1119
FokI	GGATG	4 cut(s)	149, 188, 454, 1631
FriOI	GRGCYC	1 cut(s)	1399
FspBI	CTAG	9 cut(s)	186, 327, 621, 810, 882, 906, 1133, 1167, 1512
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	4 cut(s)	159, 446, 1124, 1397
HgaI	GACGC	1 cut(s)	1716
Hin1II	CATG	6 cut(s)	285, 323, 573, 847, 980, 1123
HincII	GTYRAC	4 cut(s)	84, 744, 856, 966
HindII	GTYRAC	4 cut(s)	84, 744, 856, 966
HindIII	AAGCTT	2 cut(s)	167, 891
HinfI	GANTC	5 cut(s)	92, 257, 911, 1066, 1193
HpaI	GTTAAC	1 cut(s)	84
Hpy166II	GTNNAC	4 cut(s)	84, 744, 856, 966
Hpy188I	TCNGA	8 cut(s)	91, 133, 213, 672, 680, 702, 1100, 1558
Hpy8I	GTNNAC	4 cut(s)	84, 744, 856, 966
Hpy99I	CGWCG	2 cut(s)	522, 1710
HpyAV	CCTTC	7 cut(s)	55, 218, 263, 480, 627, 709, 1553
HpyCH4III	ACNGT	7 cut(s)	313, 465, 657, 741, 990, 1078, 1116
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	9 cut(s)	362, 479, 536, 569, 976, 1172, 1361, 1451, 1457
HpyF10VI	GCNNNNNNNGC	9 cut(s)	500, 1211, 1298, 1403, 1430, 1454, 1457, 1466, 1572
HpyF3I	CTNAG	7 cut(s)	35, 1158, 1206, 1287, 1293, 1347, 1463
HpySE526I	ACGT	1 cut(s)	86
Hsp92II	CATG	6 cut(s)	285, 323, 573, 847, 980, 1123
KpnI	GGTACC	2 cut(s)	1166, 1614
KspAI	GTTAAC	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	128, 1036, 1368, 1553
LmnI	GCTCC	3 cut(s)	506, 619, 784
LweI	GCATC	5 cut(s)	466, 488, 577, 1370, 1585
MaeI	CTAG	9 cut(s)	186, 327, 621, 810, 882, 906, 1133, 1167, 1512
MaeII	ACGT	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	787, 1672
MalI	GATC	4 cut(s)	130, 1038, 1370, 1555
MboI	GATC	4 cut(s)	128, 1036, 1368, 1553
MboII	GAAGA	3 cut(s)	506, 1267, 1329
MflI	RGATCY	3 cut(s)	1036, 1368, 1553
MhlI	GDGCHC	3 cut(s)	375, 1399, 1471
MlyI	GAGTC	2 cut(s)	920, 1060
Mph1103I	ATGCAT	1 cut(s)	481
MseI	TTAA	4 cut(s)	83, 99, 954, 1521
MslI	CAYNNNNRTG	1 cut(s)	432
MspA1I	CMGCKG	3 cut(s)	503, 634, 1454
MspR9I	CCNGG	2 cut(s)	1400, 1615
Mva1269I	GAATGC	2 cut(s)	1003, 1156
MvaI	CCWGG	2 cut(s)	1400, 1615
MwoI	GCNNNNNNNGC	9 cut(s)	500, 1211, 1298, 1403, 1430, 1454, 1457, 1466, 1572
NdeII	GATC	4 cut(s)	128, 1036, 1368, 1553
NlaIII	CATG	6 cut(s)	285, 323, 573, 847, 980, 1123
NlaIV	GGNNCC	4 cut(s)	1038, 1164, 1397, 1612
NmeAIII	GCCGAG	3 cut(s)	703, 1432, 1459
NmuCI	GTSAC	1 cut(s)	1672
NsiI	ATGCAT	1 cut(s)	481
PaeR7I	CTCGAG	2 cut(s)	115, 1688
PagI	TCATGA	1 cut(s)	319
PctI	GAATGC	2 cut(s)	1003, 1156
PfeI	GAWTC	3 cut(s)	92, 257, 1193
PleI	GAGTC	2 cut(s)	919, 1060
PpsI	GAGTC	2 cut(s)	919, 1060
PshAI	GACNNNNGTC	1 cut(s)	749
Psp6I	CCWGG	2 cut(s)	1398, 1613
PspGI	CCWGG	2 cut(s)	1398, 1613
PspN4I	GGNNCC	4 cut(s)	1038, 1164, 1397, 1612
PspOMI	GGGCCC	1 cut(s)	1395
PspPI	GGNCC	6 cut(s)	158, 263, 444, 1395, 1396, 1586
PstI	CTGCAG	2 cut(s)	1453, 1459
PsuI	RGATCY	3 cut(s)	1036, 1368, 1553
PvuII	CAGCTG	2 cut(s)	634, 1454
RsaI	GTAC	4 cut(s)	886, 904, 1164, 1612
RsaNI	GTAC	4 cut(s)	885, 903, 1163, 1611
RseI	CAYNNNNRTG	1 cut(s)	432
SaqAI	TTAA	4 cut(s)	83, 99, 954, 1521
Sau3AI	GATC	4 cut(s)	128, 1036, 1368, 1553
Sau96I	GGNCC	6 cut(s)	158, 263, 444, 1395, 1396, 1586
ScaI	AGTACT	1 cut(s)	904
SchI	GAGTC	2 cut(s)	920, 1060
ScrFI	CCNGG	2 cut(s)	1400, 1615
SduI	GDGCHC	3 cut(s)	375, 1399, 1471
SfaNI	GCATC	5 cut(s)	466, 488, 577, 1370, 1585
SfcI	CTRYAG	2 cut(s)	1449, 1455
Sfr274I	CTCGAG	2 cut(s)	115, 1688
SinI	GGWCC	2 cut(s)	263, 1586
SlaI	CTCGAG	2 cut(s)	115, 1688
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	7 cut(s)	115, 838, 898, 1004, 1197, 1470, 1688
SmoI	CTYRAG	7 cut(s)	115, 838, 898, 1004, 1197, 1470, 1688
SsiI	CCGC	4 cut(s)	501, 727, 1428, 1605
SspI	AATATT	3 cut(s)	14, 55, 685
SspMI	CTAG	9 cut(s)	186, 327, 621, 810, 882, 906, 1133, 1167, 1512
StyD4I	CCNGG	2 cut(s)	1398, 1613
TaaI	ACNGT	7 cut(s)	313, 465, 657, 741, 990, 1078, 1116
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	4 cut(s)	116, 230, 1319, 1689
TatI	WGTACW	2 cut(s)	884, 902
TauI	GCSGC	1 cut(s)	1430
TfiI	GAWTC	3 cut(s)	92, 257, 1193
Tru1I	TTAA	4 cut(s)	83, 99, 954, 1521
Tru9I	TTAA	4 cut(s)	83, 99, 954, 1521
TscAI	CASTG	1 cut(s)	1706
TseFI	GTSAC	1 cut(s)	1672
Tsp45I	GTSAC	1 cut(s)	1672
TspRI	CASTG	1 cut(s)	1706
VpaK11BI	GGWCC	2 cut(s)	263, 1586
XapI	RAATTY	2 cut(s)	19, 225
XbaI	TCTAGA	1 cut(s)	1132
XhoI	CTCGAG	2 cut(s)	115, 1688
XspI	CTAG	9 cut(s)	186, 327, 621, 810, 882, 906, 1133, 1167, 1512
ZrmI	AGTACT	1 cut(s)	904
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.