Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006215.1

Orthogroup ID

OG0010963

Physical Location & Seq

Genomic Coordinates Reverse (-)

18028 .. 19615

Gene Structure 1588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atggaggactctgagttctctacccttctgtgccgagaagatgagacttgcttgatgaatcaagtggaagatgatgatgatgaagaattagaaagtttctacccgttttttgtttctgagaatgaagacgagtatattgagaatttggttcagaaggaaagttattgctttggatccaaaggctttgtgccctttactcattgctctgccacaagctggttcaaagctgctcgcttggattctattgattggattttcaatgcaagggcagaatttggtttccggttgcaaacagcatatttatctatcacatactatgatctgtttctttcaaagcgatccattgatgatgggaaactgtgggcgtttagactattatccgtggcatgtttatccttggcggccaagatggaagaaatcaaagtaccatctttgtcagaatttcaggttcaagattatgattttgaaggcagaacgattcagagaatggagctaatggtgttaagtacattggaatggaagttgggttcaatcactcctttttcttatctgcataacttcgtttataagttctgctgtgaatgtgaatccagaccaaaaggactagtctctggtgctataagactcatcgtggcaatgacaaaagagattgatttaatagatactcggccatctgttattgcagcagctgcaatattggcactagttgatggtcagttaactagaaaacttctggagcttaagataagctcgatctcattctggcattcccaagattatgaacatatatattcgtgttataatcttatgcagaaaattatggaaagaaaagataagacaccacccaagttttcactctcttcccctaatgtgttaccaacacaatcaagctcaatcgatgtgcttgaaatctcagtgggcacaaagagaaggcttaccttcagtgactctgatgacctcagttgcccaacaaagaaacttcacatgccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

330

Amino Acids

37.94

Weight (kDa)

4.88

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	75 - 175	9.3e-23	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37630 AT4G37630 AT4G37630
fragaria_vesca	FvH4_1g17530 FvH4_1g17530
malus_domestica	MD02G1184500.v1.1 MD15G1295800.v1.1
prunus_persica	Prupe.6G222000_v2.0.a1 Prupe.6G222000_v2.0.a1
pyrus_communis	pycom15g25870
rosa_chinensis	RchiOBHm_Chr2g0107771
rosa_laevigata	RLG00000017614
rosa_multiflora	Rmu_sc0006215.1_g000005
rosa_roxburghii	Rroxscaffold_2G00135970
rosa_rugosa	Rorug02G0147400
rosa_samantha	Rh2AG197500 Rh2BG209800 Rh2CG202200 Rh2DG205300
rosa_wichuraiana	Rw2G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	567, 801
AccB7I	CCANNNNNTGG	1 cut(s)	216
AciI	CCGC	1 cut(s)	401
AclWI	GGATC	3 cut(s)	168, 181, 333
AcoI	YGGCCR	2 cut(s)	402, 668
AcsI	RAATTY	3 cut(s)	142, 272, 440
AcuI	CTGAAG	1 cut(s)	925
AfaI	GTAC	2 cut(s)	426, 508
AfiI	CCNNNNNNNGG	1 cut(s)	216
AflII	CTTAAG	1 cut(s)	740
AgsI	TTSAA	7 cut(s)	223, 259, 333, 452, 467, 531, 908
AhlI	ACTAGT	2 cut(s)	604, 703
AloI	GAACNNNNNNTCC	3 cut(s)	31, 511, 543
AluBI	AGCT	7 cut(s)	216, 227, 493, 689, 739, 750, 891
AluI	AGCT	7 cut(s)	216, 227, 493, 689, 739, 750, 891
Alw26I	GTCTC	2 cut(s)	38, 613
AlwI	GGATC	3 cut(s)	168, 181, 333
AlwNI	CAGNNNCTG	1 cut(s)	689
AoxI	GGCC	2 cut(s)	402, 668
ApeKI	GCWGC	4 cut(s)	227, 683, 686, 689
ApoI	RAATTY	3 cut(s)	142, 272, 440
BaeGI	GKGCMC	2 cut(s)	192, 923
BamHI	GGATCC	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	4 cut(s)	214, 676, 695, 698
BccI	CCATC	5 cut(s)	344, 403, 436, 679, 704
BcoDI	GTCTC	2 cut(s)	38, 613
BcuI	ACTAGT	2 cut(s)	604, 703
BfaI	CTAG	3 cut(s)	605, 704, 723
BfrI	CTTAAG	1 cut(s)	740
BisI	GCNGC	5 cut(s)	228, 402, 684, 687, 690
BlsI	GCNGC	5 cut(s)	229, 403, 685, 688, 691
BmiI	GGNNCC	1 cut(s)	175
BpiI	GAAGAC	1 cut(s)	132
BpmI	CTGGAG	1 cut(s)	755
Bsa29I	ATCGAT	1 cut(s)	897
BsaJI	CCNNGG	2 cut(s)	381, 396
BsaWI	WCCGGW	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse3DI	GCAATG	2 cut(s)	199, 642
BseCI	ATCGAT	1 cut(s)	897
BseDI	CCNNGG	2 cut(s)	381, 396
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMI	GCAATG	2 cut(s)	199, 642
BseMII	CTCAG	3 cut(s)	108, 927, 973
BseSI	GKGCMC	2 cut(s)	192, 923
BseXI	GCAGC	4 cut(s)	214, 676, 695, 698
BshFI	GGCC	2 cut(s)	404, 670
BshVI	ATCGAT	1 cut(s)	897
BsiSI	CCGG	1 cut(s)	283
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmAI	GTCTC	2 cut(s)	38, 613
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	2 cut(s)	404, 670
Bsp1286I	GDGCHC	2 cut(s)	192, 923
Bsp143I	GATC	4 cut(s)	173, 319, 338, 753
BspACI	CCGC	1 cut(s)	401
BspANI	GGCC	2 cut(s)	404, 670
BspCNI	CTCAG	4 cut(s)	4, 109, 926, 972
BspDI	ATCGAT	1 cut(s)	897
BspLI	GGNNCC	1 cut(s)	175
BspPI	GGATC	3 cut(s)	168, 181, 333
BspTI	CTTAAG	1 cut(s)	740
BsrDI	GCAATG	2 cut(s)	199, 642
BssECI	CCNNGG	2 cut(s)	381, 396
BssMI	GATC	4 cut(s)	173, 319, 338, 753
BssT1I	CCWWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	865
BstAFI	CTTAAG	1 cut(s)	740
BstAPI	GCANNNNNTGC	1 cut(s)	689
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	4 cut(s)	12, 117, 913, 959
BstDSI	CCRYGG	1 cut(s)	381
BstKTI	GATC	4 cut(s)	176, 322, 341, 756
BstMAI	GTCTC	2 cut(s)	38, 613
BstMBI	GATC	4 cut(s)	173, 319, 338, 753
BstMWI	GCNNNNNNNGC	2 cut(s)	689, 698
BstNSI	RCATGY	2 cut(s)	390, 988
BstSLI	GKGCMC	2 cut(s)	192, 923
BstV1I	GCAGC	4 cut(s)	214, 676, 695, 698
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
Bsu15I	ATCGAT	1 cut(s)	897
BsuRI	GGCC	2 cut(s)	404, 670
BsuTUI	ATCGAT	1 cut(s)	897
BtgI	CCRYGG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	921, 949
Cac8I	GCNNGC	1 cut(s)	232
CaiI	CAGNNNCTG	1 cut(s)	689
ClaI	ATCGAT	1 cut(s)	897
Csp6I	GTAC	2 cut(s)	425, 507
CviAII	CATG	2 cut(s)	387, 985
CviQI	GTAC	2 cut(s)	425, 507
DdeI	CTNAG	4 cut(s)	12, 117, 913, 959
DpnI	GATC	4 cut(s)	175, 321, 340, 755
DpnII	GATC	4 cut(s)	173, 319, 338, 753
EaeI	YGGCCR	2 cut(s)	402, 668
Eam1104I	CTCTTC	1 cut(s)	865
EarI	CTCTTC	1 cut(s)	865
Eco130I	CCWWGG	1 cut(s)	396
Eco57I	CTGAAG	1 cut(s)	925
EcoT14I	CCWWGG	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	2 cut(s)	390, 988
FatI	CATG	2 cut(s)	386, 984
Fnu4HI	GCNGC	5 cut(s)	228, 402, 684, 687, 690
Fsp4HI	GCNGC	5 cut(s)	228, 402, 684, 687, 690
FspBI	CTAG	3 cut(s)	605, 704, 723
GluI	GCNGC	5 cut(s)	228, 402, 684, 687, 690
GsuI	CTGGAG	1 cut(s)	755
HaeIII	GGCC	2 cut(s)	404, 670
HapII	CCGG	1 cut(s)	283
Hin1II	CATG	2 cut(s)	390, 988
HincII	GTYRAC	1 cut(s)	720
HindII	GTYRAC	1 cut(s)	720
HinfI	GANTC	7 cut(s)	8, 58, 239, 478, 587, 624, 947
HpaI	GTTAAC	1 cut(s)	720
HpaII	CCGG	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	720
Hpy188I	TCNGA	6 cut(s)	13, 118, 153, 439, 483, 952
Hpy188III	TCNNGA	3 cut(s)	452, 591, 734
Hpy8I	GTNNAC	1 cut(s)	720
HpyAV	CCTTC	5 cut(s)	35, 148, 461, 924, 949
HpyCH4III	ACNGT	1 cut(s)	360
HpyCH4V	TGCA	6 cut(s)	263, 289, 553, 683, 692, 811
HpyF10VI	GCNNNNNNNGC	2 cut(s)	689, 698
HpyF3I	CTNAG	4 cut(s)	12, 117, 913, 959
Hsp92II	CATG	2 cut(s)	390, 988
KspAI	GTTAAC	1 cut(s)	720
Kzo9I	GATC	4 cut(s)	173, 319, 338, 753
LmnI	GCTCC	2 cut(s)	490, 736
LpnPI	CCDG	7 cut(s)	202, 296, 431, 597, 604, 719, 748
Lsp1109I	GCAGC	4 cut(s)	214, 676, 695, 698
MaeI	CTAG	3 cut(s)	605, 704, 723
MaeIII	GTNAC	2 cut(s)	873, 944
MalI	GATC	4 cut(s)	175, 321, 340, 755
MboI	GATC	4 cut(s)	173, 319, 338, 753
MboII	GAAGA	6 cut(s)	50, 80, 95, 137, 425, 852
MflI	RGATCY	1 cut(s)	173
MhlI	GDGCHC	2 cut(s)	192, 923
MluCI	AATT	5 cut(s)	86, 142, 272, 440, 816
MlyI	GAGTC	3 cut(s)	2, 618, 941
MnlI	CCTC	1 cut(s)	968
MseI	TTAA	4 cut(s)	503, 656, 719, 741
MslI	CAYNNNNRTG	1 cut(s)	514
MspA1I	CMGCKG	1 cut(s)	689
MspCI	CTTAAG	1 cut(s)	740
MspI	CCGG	1 cut(s)	283
Mva1269I	GAATGC	1 cut(s)	766
MwoI	GCNNNNNNNGC	2 cut(s)	689, 698
NdeII	GATC	4 cut(s)	173, 319, 338, 753
NlaIII	CATG	2 cut(s)	390, 988
NlaIV	GGNNCC	1 cut(s)	175
NmeAIII	GCCGAG	2 cut(s)	59, 646
NmuCI	GTSAC	1 cut(s)	944
NspI	RCATGY	2 cut(s)	390, 988
PctI	GAATGC	1 cut(s)	766
PfeI	GAWTC	4 cut(s)	58, 239, 478, 587
PflMI	CCANNNNNTGG	1 cut(s)	216
PkrI	GCNGC	5 cut(s)	229, 403, 685, 688, 691
PleI	GAGTC	3 cut(s)	2, 618, 941
PpsI	GAGTC	3 cut(s)	2, 618, 941
PsiI	TTATAA	2 cut(s)	567, 801
PspN4I	GGNNCC	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	689
PsuI	RGATCY	1 cut(s)	173
PvuII	CAGCTG	1 cut(s)	689
RsaI	GTAC	2 cut(s)	426, 508
RsaNI	GTAC	2 cut(s)	425, 507
RseI	CAYNNNNRTG	1 cut(s)	514
SaqAI	TTAA	4 cut(s)	503, 656, 719, 741
SatI	GCNGC	5 cut(s)	228, 402, 684, 687, 690
Sau3AI	GATC	4 cut(s)	173, 319, 338, 753
SchI	GAGTC	3 cut(s)	2, 618, 941
SduI	GDGCHC	2 cut(s)	192, 923
SmiMI	CAYNNNNRTG	1 cut(s)	514
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
SpeI	ACTAGT	2 cut(s)	604, 703
Sse9I	AATT	5 cut(s)	86, 142, 272, 440, 816
SsiI	CCGC	1 cut(s)	401
SspI	AATATT	1 cut(s)	696
SspMI	CTAG	3 cut(s)	605, 704, 723
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	360
TaqI	TCGA	2 cut(s)	752, 897
TasI	AATT	5 cut(s)	86, 142, 272, 440, 816
TatI	WGTACW	1 cut(s)	506
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	4 cut(s)	58, 239, 478, 587
Tru1I	TTAA	4 cut(s)	503, 656, 719, 741
Tru9I	TTAA	4 cut(s)	503, 656, 719, 741
TscAI	CASTG	2 cut(s)	921, 949
TseFI	GTSAC	1 cut(s)	944
TseI	GCWGC	4 cut(s)	227, 683, 686, 689
Tsp45I	GTSAC	1 cut(s)	944
TspDTI	ATGAA	4 cut(s)	71, 96, 138, 795
TspGWI	ACGGA	1 cut(s)	370
TspRI	CASTG	2 cut(s)	921, 949
Van91I	CCANNNNNTGG	1 cut(s)	216
Vha464I	CTTAAG	1 cut(s)	740
XapI	RAATTY	3 cut(s)	142, 272, 440
XceI	RCATGY	2 cut(s)	390, 988
XspI	CTAG	3 cut(s)	605, 704, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.