Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006267.1

Orthogroup ID

OG0008657

Physical Location & Seq

Genomic Coordinates Forward (+)

80 .. 1543

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgaaggagaggaaagagcggagagggcgttcaactagagcttctgccttgtcaactcctattgaagcaggagatgaagatgtgctggatgatgatggagaagaggaacgagaggcctggtttacttctatctctttggcactctgtaaggcttttgatctattggaaatgctaaagaaggaagaagagatgctgctagcttttaaggaaaggcaatcaaaggagggggataaggaattttatcaagaagttcttgatgatcgtgctcagagggctgaagcttggcatcgtaatgctgcagctcaagtgcagtatagtaaaccagcacagcccatcacatgtgcaacttttgcacaagatgttttagaagggagagcaagtgtgtcacagatgcatgagcacaaacaccagcctctaatctttggaccagcaagtcttgttggtggaagcataacaagtgagagggaaaggatggcagctcaggttttccagcctagtcataggttacccaccatgagcattgaggaagctgggctgaaggagatggagataatgaacaaatggcaagagaggaatgttaaactcatggaagaagcaaactcttcatggtacaatgacagtgggaaactgccaggaccgccccaggaagatgatgaagatgatgatgctgctcaagacaaggcaagggcatgggatgactggaaagacgataatcctcgaggtgctggcaataagaagctcaccccttgtggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001558 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006808 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009966 GO:0009967 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010646 GO:0010647 GO:0010921 GO:0019208 GO:0019220 GO:0019222 GO:0019888 GO:0019899 GO:0019900 GO:0019902 GO:0019903 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0030307 GO:0031323 GO:0031399 GO:0031929 GO:0032006 GO:0032008 GO:0032268 GO:0033993 GO:0035303 GO:0035304 GO:0035556 GO:0040008 GO:0042221 GO:0043666 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051171 GO:0051174 GO:0051239 GO:0051241 GO:0051246 GO:0051336 GO:0051716 GO:0051721 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0097305 GO:0098772 GO:1900140 GO:1901700 GO:1902531 GO:1902533 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

TAP42

Protein Analysis

251

Amino Acids

28.47

Weight (kDa)

4.86

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAP42	PF04177	24 - 239	7.4e-42	TAP42-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53000
fragaria_vesca	FvH4_7g31380 FvH4_7g31380 FvH4_7g31380
malus_domestica	MD01G1217800.v1.1 MD07G1287100.v1.1 MD07G1287400.v1.1
prunus_persica	Prupe.2G309200_v2.0.a1 Prupe.2G309200_v2.0.a1
pyrus_communis	pycom01g22790 pycom07g26040
rosa_chinensis	RchiOBHm_Chr1g0380451
rosa_laevigata	RLG00000026299
rosa_multiflora	Rmu_sc0001733.1_g000010 Rmu_sc0005371.1_g000013 Rmu_sc0006267.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279350
rosa_rugosa	Rorug01G0421200
rosa_samantha	Rh1AG445700 Rh1BG401000 Rh1CG415400 Rh1DG431100
rosa_wichuraiana	Rw1G038790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	432
AbsI	CCTCGAGG	1 cut(s)	717
AccBSI	CCGCTC	1 cut(s)	19
AciI	CCGC	2 cut(s)	19, 638
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	2 cut(s)	297, 557
AfaI	GTAC	1 cut(s)	611
AflIII	ACRYGT	1 cut(s)	338
AgsI	TTSAA	2 cut(s)	33, 65
AjnI	CCWGG	3 cut(s)	116, 631, 642
AloI	GAACNNNNNNTCC	2 cut(s)	13, 45
AluBI	AGCT	7 cut(s)	41, 200, 281, 302, 479, 530, 739
AluI	AGCT	7 cut(s)	41, 200, 281, 302, 479, 530, 739
Alw21I	GWGCWC	2 cut(s)	268, 402
Ama87I	CYCGRG	1 cut(s)	717
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	5 cut(s)	193, 296, 299, 476, 668
ApoI	RAATTY	1 cut(s)	236
AspS9I	GGNCC	2 cut(s)	425, 635
AsuHPI	GGTGA	1 cut(s)	733
AsuNHI	GCTAGC	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	717
AvaII	GGWCC	2 cut(s)	425, 635
Bbv12I	GWGCWC	2 cut(s)	268, 402
BbvI	GCAGC	5 cut(s)	180, 283, 311, 488, 655
BccI	CCATC	4 cut(s)	89, 341, 466, 538
BciT130I	CCWGG	3 cut(s)	118, 633, 644
BfaI	CTAG	3 cut(s)	36, 197, 495
BfmI	CTRYAG	1 cut(s)	297
BisI	GCNGC	5 cut(s)	194, 297, 300, 477, 669
BlsI	GCNGC	5 cut(s)	195, 298, 301, 478, 670
Bme1390I	CCNGG	3 cut(s)	118, 633, 644
Bme18I	GGWCC	2 cut(s)	425, 635
BmeT110I	CYCGRG	1 cut(s)	717
BmgT120I	GGNCC	2 cut(s)	425, 635
BmrFI	CCNGG	3 cut(s)	118, 633, 644
BmsI	GCATC	4 cut(s)	180, 295, 381, 655
BmtI	GCTAGC	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	480
BpuEI	CTTGAG	2 cut(s)	288, 657
BsaJI	CCNNGG	1 cut(s)	642
BsaXI	ACNNNNNCTCC	4 cut(s)	13, 43, 364, 394
Bse1I	ACTGG	1 cut(s)	704
BseBI	CCWGG	3 cut(s)	118, 633, 644
BseDI	CCNNGG	1 cut(s)	642
BseGI	GGATG	3 cut(s)	94, 477, 700
BseMII	CTCAG	2 cut(s)	281, 494
BseNI	ACTGG	1 cut(s)	704
BseXI	GCAGC	5 cut(s)	180, 283, 311, 488, 655
BseYI	CCCAGC	1 cut(s)	530
BsgI	GTGCAG	1 cut(s)	329
BshFI	GGCC	1 cut(s)	116
BsiHKAI	GWGCWC	2 cut(s)	268, 402
BsiHKCI	CYCGRG	1 cut(s)	717
BsnI	GGCC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	717
Bsp1286I	GDGCHC	2 cut(s)	268, 402
Bsp143I	GATC	2 cut(s)	157, 259
BspACI	CCGC	2 cut(s)	19, 638
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	2 cut(s)	280, 493
BspMAI	CTGCAG	1 cut(s)	301
BspOI	GCTAGC	1 cut(s)	200
BsrBI	CCGCTC	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	704
BssECI	CCNNGG	1 cut(s)	642
BssMI	GATC	2 cut(s)	157, 259
Bst2UI	CCWGG	3 cut(s)	118, 633, 644
Bst4CI	ACNGT	1 cut(s)	620
Bst6I	CTCTTC	3 cut(s)	96, 180, 607
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstC8I	GCNNGC	2 cut(s)	198, 727
BstDEI	CTNAG	2 cut(s)	267, 480
BstEII	GGTNACC	1 cut(s)	504
BstF5I	GGATG	3 cut(s)	94, 477, 700
BstKTI	GATC	2 cut(s)	160, 262
BstMBI	GATC	2 cut(s)	157, 259
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 272, 350, 637
BstNI	CCWGG	3 cut(s)	118, 633, 644
BstNSI	RCATGY	1 cut(s)	342
BstPI	GGTNACC	1 cut(s)	504
BstSCI	CCNGG	3 cut(s)	116, 631, 642
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	5 cut(s)	180, 283, 311, 488, 655
BsuRI	GGCC	1 cut(s)	116
BtsCI	GGATG	3 cut(s)	94, 477, 700
BtsIMutI	CAGTG	1 cut(s)	625
Cac8I	GCNNGC	2 cut(s)	198, 727
Cfr13I	GGNCC	2 cut(s)	425, 635
Csp6I	GTAC	1 cut(s)	610
CspCI	CAANNNNNGTGG	2 cut(s)	601, 636
CviAII	CATG	6 cut(s)	339, 395, 514, 586, 606, 690
CviQI	GTAC	1 cut(s)	610
DdeI	CTNAG	2 cut(s)	267, 480
DpnI	GATC	2 cut(s)	159, 261
DpnII	GATC	2 cut(s)	157, 259
DrdI	GACNNNNNNGTC	1 cut(s)	432
DseDI	GACNNNNNNGTC	1 cut(s)	432
Eam1104I	CTCTTC	3 cut(s)	96, 180, 607
EarI	CTCTTC	3 cut(s)	96, 180, 607
Eco147I	AGGCCT	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	425, 635
Eco57I	CTGAAG	2 cut(s)	297, 557
Eco88I	CYCGRG	1 cut(s)	717
Eco91I	GGTNACC	1 cut(s)	504
EcoO65I	GGTNACC	1 cut(s)	504
EcoRII	CCWGG	3 cut(s)	116, 631, 642
EcoT22I	ATGCAT	1 cut(s)	396
FaeI	CATG	6 cut(s)	342, 398, 517, 589, 609, 693
FaiI	YATR	9 cut(s)	315, 340, 396, 452, 501, 515, 587, 607, 691
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FatI	CATG	6 cut(s)	338, 394, 513, 585, 605, 689
Fnu4HI	GCNGC	5 cut(s)	194, 297, 300, 477, 669
FokI	GGATG	3 cut(s)	101, 484, 707
Fsp4HI	GCNGC	5 cut(s)	194, 297, 300, 477, 669
FspBI	CTAG	3 cut(s)	36, 197, 495
GluI	GCNGC	5 cut(s)	194, 297, 300, 477, 669
GsaI	CCCAGC	1 cut(s)	534
HaeIII	GGCC	1 cut(s)	116
Hin1II	CATG	6 cut(s)	342, 398, 517, 589, 609, 693
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HindIII	AAGCTT	1 cut(s)	279
HphI	GGTGA	1 cut(s)	733
Hpy166II	GTNNAC	3 cut(s)	54, 123, 320
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	3 cut(s)	245, 254, 674
Hpy8I	GTNNAC	3 cut(s)	54, 123, 320
HpyAV	CCTTC	3 cut(s)	172, 362, 532
HpyCH4III	ACNGT	1 cut(s)	620
HpyCH4V	TGCA	5 cut(s)	299, 310, 344, 353, 394
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 272, 350, 637
HpyF3I	CTNAG	2 cut(s)	267, 480
Hsp92II	CATG	6 cut(s)	342, 398, 517, 589, 609, 693
Kzo9I	GATC	2 cut(s)	157, 259
Lsp1109I	GCAGC	5 cut(s)	180, 283, 311, 488, 655
LweI	GCATC	4 cut(s)	180, 295, 381, 655
MaeI	CTAG	3 cut(s)	36, 197, 495
MaeIII	GTNAC	2 cut(s)	384, 504
MalI	GATC	2 cut(s)	159, 261
MbiI	CCGCTC	1 cut(s)	19
MboI	GATC	2 cut(s)	157, 259
MboII	GAAGA	8 cut(s)	89, 113, 194, 197, 594, 602, 659, 668
MhlI	GDGCHC	2 cut(s)	268, 402
MluCI	AATT	1 cut(s)	236
Mph1103I	ATGCAT	1 cut(s)	396
MseI	TTAA	2 cut(s)	204, 579
MslI	CAYNNNNRTG	1 cut(s)	291
MspR9I	CCNGG	3 cut(s)	118, 633, 644
MvaI	CCWGG	3 cut(s)	118, 633, 644
MwoI	GCNNNNNNNGC	4 cut(s)	25, 272, 350, 637
NdeII	GATC	2 cut(s)	157, 259
NheI	GCTAGC	1 cut(s)	196
NlaIII	CATG	6 cut(s)	342, 398, 517, 589, 609, 693
NmuCI	GTSAC	1 cut(s)	384
NsiI	ATGCAT	1 cut(s)	396
NspI	RCATGY	1 cut(s)	342
PaeR7I	CTCGAG	1 cut(s)	717
PceI	AGGCCT	1 cut(s)	116
PciI	ACATGT	1 cut(s)	338
PkrI	GCNGC	5 cut(s)	195, 298, 301, 478, 670
PscI	ACATGT	1 cut(s)	338
Psp6I	CCWGG	3 cut(s)	116, 631, 642
PspEI	GGTNACC	1 cut(s)	504
PspFI	CCCAGC	1 cut(s)	530
PspGI	CCWGG	3 cut(s)	116, 631, 642
PspPI	GGNCC	2 cut(s)	425, 635
PspXI	VCTCGAGB	1 cut(s)	717
PstI	CTGCAG	1 cut(s)	301
RsaI	GTAC	1 cut(s)	611
RsaNI	GTAC	1 cut(s)	610
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	204, 579
SatI	GCNGC	5 cut(s)	194, 297, 300, 477, 669
Sau3AI	GATC	2 cut(s)	157, 259
Sau96I	GGNCC	2 cut(s)	425, 635
ScrFI	CCNGG	3 cut(s)	118, 633, 644
SduI	GDGCHC	2 cut(s)	268, 402
SfaNI	GCATC	4 cut(s)	180, 295, 381, 655
SfcI	CTRYAG	1 cut(s)	297
Sfr274I	CTCGAG	1 cut(s)	717
SinI	GGWCC	2 cut(s)	425, 635
SlaI	CTCGAG	1 cut(s)	717
SmiMI	CAYNNNNRTG	1 cut(s)	291
SmlI	CTYRAG	3 cut(s)	303, 672, 717
SmoI	CTYRAG	3 cut(s)	303, 672, 717
Sse9I	AATT	1 cut(s)	236
SseBI	AGGCCT	1 cut(s)	116
SsiI	CCGC	2 cut(s)	19, 638
SspMI	CTAG	3 cut(s)	36, 197, 495
StuI	AGGCCT	1 cut(s)	116
StyD4I	CCNGG	3 cut(s)	116, 631, 642
TaaI	ACNGT	1 cut(s)	620
TaqI	TCGA	1 cut(s)	718
TasI	AATT	1 cut(s)	236
Tru1I	TTAA	2 cut(s)	204, 579
Tru9I	TTAA	2 cut(s)	204, 579
TscAI	CASTG	1 cut(s)	625
TseFI	GTSAC	1 cut(s)	384
TseI	GCWGC	5 cut(s)	193, 296, 299, 476, 668
Tsp45I	GTSAC	1 cut(s)	384
TspDTI	ATGAA	5 cut(s)	17, 90, 569, 594, 669
TspRI	CASTG	1 cut(s)	625
VpaK11BI	GGWCC	2 cut(s)	425, 635
XapI	RAATTY	1 cut(s)	236
XceI	RCATGY	1 cut(s)	342
XhoI	CTCGAG	1 cut(s)	717
XspI	CTAG	3 cut(s)	36, 197, 495
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.