Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006315.1

Orthogroup ID

OG0018238

Physical Location & Seq

Genomic Coordinates Reverse (-)

25286 .. 26518

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

atggatcagatcaaagtgagtgaatcagaaagggagaatgtgaatcggaatcggaatcgcaaacggagtccgaatccgagttcgaatcgcaaccccaaattgtatgtatgttgccaggaagaaaactgctccaggggctgctacctcatccgcgccatcgatttggagcgtttgatggcttgctcctgtgactttgatgaagacgaatgtgtggaaatcaagtgcgctagctgcgaatcttgccccgatcaagatttgcggccagtcggtttactctgcggcgaccagtatgatgtccccagctggatgggctgctgtccctttggctcccaagttgtcttcgtaggcggcgagttagcaccgtggtcgcatgatttcaaacccagccgaaaggttttcgtctatgacattgaggataaggagaaaggcaacaacatcaaggagttggacaaaagctgcaacggtcttgcaaatatccatcatgacatatattatccgcggatgatggagataggaggagatctctatgctctcggagtcgtcaaatgtgacgtcagtgtctctcaggtatacaggcgccaatcgcagcggtgggaagctctgcctccacccataccgagtttcagtcatgattgcactcgtcgtactctattttctctactttccacggacaacaagatctttctgtccacctattccccacaaatgccggtcaaatgtttcgacaccgactgtaaatgctggattgctgattccggcttccacagtgaggttttcccctttgtgggtgaggctttagtcgtggacttggataaacctagcaaggagaagttgctgtttgccaatggtcgtgatactatattcgtgtggcgattgggattgactgatgatctgaaaggttcttgtcttaccagatacgggtctgtgaatgtgaaacccaggttgcttggcttattgggagacaaatttgaagtatctaagcagcatcatctcatcgatctaggagatggaaaaatctgcttggttagagccaggagctacccagttattgaaggttatataaattcagaagggcttgagaaggtgtgtgttgttatcatagtattcaaatatgagtttgatccgagagcacaagccttggcctacaagttcctgtctacccgcaactttaccttcatgccccattgcaaggaatgcagctttgtcagcctgcttaaatgctttgtgcgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

410

Amino Acids

46.7

Weight (kDa)

6.47

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1668	PF07893	98 - 371	4.5e-11	Protein of unknown function (DUF1668)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018238)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000026445 RLG00000026447 RLG00000026453
rosa_multiflora	Rmu_sc0006315.1_g000005 Rmu_sc0013545.1_g000003
rosa_roxburghii	Rroxscaffold_4G00280560
rosa_rugosa	Rorug01G0407600 Rorug01G0407600 Rorug01G0407700
rosa_samantha	Rh1AG421800
rosa_wichuraiana	Rw1G037550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	557
AatII	GACGTC	1 cut(s)	555
AccB1I	GGYRCC	1 cut(s)	576
AccI	GTMKAC	2 cut(s)	570, 1157
AccII	CGCG	2 cut(s)	153, 499
AciI	CCGC	8 cut(s)	151, 259, 279, 348, 497, 499, 589, 1162
AclWI	GGATC	2 cut(s)	12, 1115
AcoI	YGGCCR	1 cut(s)	260
AcsI	RAATTY	2 cut(s)	965, 1063
AcyI	GRCGYC	2 cut(s)	552, 577
AfaI	GTAC	1 cut(s)	646
AfiI	CCNNNNNNNGG	5 cut(s)	769, 784, 785, 918, 1189
AgsI	TTSAA	4 cut(s)	379, 971, 1052, 1108
AjnI	CCWGG	4 cut(s)	114, 131, 938, 1031
AluBI	AGCT	6 cut(s)	231, 303, 456, 599, 1038, 1200
AluI	AGCT	6 cut(s)	231, 303, 456, 599, 1038, 1200
Alw21I	GWGCWC	1 cut(s)	1132
Alw26I	GTCTC	2 cut(s)	565, 954
AlwI	GGATC	2 cut(s)	12, 1115
AlwNI	CAGNNNCTG	1 cut(s)	138
AoxI	GGCC	2 cut(s)	260, 1140
ApeKI	GCWGC	7 cut(s)	138, 231, 312, 456, 586, 982, 1197
ApoI	RAATTY	2 cut(s)	965, 1063
ArsI	GACNNNNNNTTYG	2 cut(s)	537, 569
AspLEI	GCGC	4 cut(s)	155, 227, 579, 1230
AsuHPI	GGTGA	1 cut(s)	800
AsuII	TTCGAA	1 cut(s)	83
AsuNHI	GCTAGC	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	576
BbsI	GAAGAC	2 cut(s)	207, 331
Bbv12I	GWGCWC	1 cut(s)	1132
BbvI	GCAGC	7 cut(s)	125, 218, 299, 443, 598, 994, 1209
BccI	CCATC	6 cut(s)	164, 169, 301, 486, 499, 1001
BcgI	CGANNNNNNTGC	2 cut(s)	348, 382
BciT130I	CCWGG	4 cut(s)	116, 133, 940, 1033
BcoDI	GTCTC	2 cut(s)	565, 954
BfaI	CTAG	4 cut(s)	228, 819, 1001, 1231
BfoI	RGCGCY	1 cut(s)	580
BglII	AGATCT	2 cut(s)	520, 678
Bme1390I	CCNGG	4 cut(s)	116, 133, 940, 1033
BmiI	GGNNCC	2 cut(s)	328, 578
BmrFI	CCNGG	4 cut(s)	116, 133, 940, 1033
BmrI	ACTGGG	1 cut(s)	1037
BmsI	GCATC	1 cut(s)	994
BmtI	GCTAGC	1 cut(s)	231
BmuI	ACTGGG	1 cut(s)	1037
BpiI	GAAGAC	2 cut(s)	207, 331
BplI	GAGNNNNNCTC	2 cut(s)	507, 539
BpmI	CTGGAG	1 cut(s)	115
Bpu14I	TTCGAA	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	1097
Bsa29I	ATCGAT	2 cut(s)	159, 996
BsaHI	GRCGYC	2 cut(s)	552, 577
BsaJI	CCNNGG	6 cut(s)	132, 362, 497, 666, 938, 1137
Bsc4I	CCNNNNNNNGG	5 cut(s)	769, 784, 785, 918, 1189
Bse118I	RCCGGY	1 cut(s)	709
Bse1I	ACTGG	3 cut(s)	263, 286, 1043
Bse3DI	GCAATG	1 cut(s)	1183
BseBI	CCWGG	4 cut(s)	116, 133, 940, 1033
BseCI	ATCGAT	2 cut(s)	159, 996
BseDI	CCNNGG	6 cut(s)	132, 362, 497, 666, 938, 1137
BseGI	GGATG	3 cut(s)	147, 312, 507
BseLI	CCNNNNNNNGG	5 cut(s)	769, 784, 785, 918, 1189
BseMI	GCAATG	1 cut(s)	1183
BseMII	CTCAG	1 cut(s)	578
BseNI	ACTGG	3 cut(s)	263, 286, 1043
BseRI	GAGGAG	1 cut(s)	531
BseXI	GCAGC	7 cut(s)	125, 218, 299, 443, 598, 994, 1209
BseYI	CCCAGC	2 cut(s)	299, 383
Bsh1236I	CGCG	2 cut(s)	153, 499
BshFI	GGCC	2 cut(s)	262, 1142
BshNI	GGYRCC	1 cut(s)	576
BshVI	ATCGAT	2 cut(s)	159, 996
BsiHKAI	GWGCWC	1 cut(s)	1132
BsiSI	CCGG	2 cut(s)	710, 756
BslFI	GGGAC	2 cut(s)	281, 303
BslI	CCNNNNNNNGG	5 cut(s)	769, 784, 785, 918, 1189
BsmAI	GTCTC	2 cut(s)	565, 954
BsmFI	GGGAC	2 cut(s)	281, 303
BsmI	GAATGC	1 cut(s)	1199
BsnI	GGCC	2 cut(s)	262, 1142
Bsp119I	TTCGAA	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	1132
Bsp143I	GATC	8 cut(s)	4, 9, 247, 520, 678, 889, 997, 1120
BspACI	CCGC	8 cut(s)	151, 259, 279, 348, 497, 499, 589, 1162
BspANI	GGCC	2 cut(s)	262, 1142
BspCNI	CTCAG	1 cut(s)	577
BspDI	ATCGAT	2 cut(s)	159, 996
BspFNI	CGCG	2 cut(s)	153, 499
BspHI	TCATGA	2 cut(s)	481, 628
BspLI	GGNNCC	2 cut(s)	328, 578
BspOI	GCTAGC	1 cut(s)	231
BspPI	GGATC	2 cut(s)	12, 1115
BspT104I	TTCGAA	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	576
BsrDI	GCAATG	1 cut(s)	1183
BsrFI	RCCGGY	1 cut(s)	709
BsrI	ACTGG	3 cut(s)	263, 286, 1043
BssAI	RCCGGY	1 cut(s)	709
BssECI	CCNNGG	6 cut(s)	132, 362, 497, 666, 938, 1137
BssMI	GATC	8 cut(s)	4, 9, 247, 520, 678, 889, 997, 1120
BssNAI	GTATAC	1 cut(s)	571
BssNI	GRCGYC	2 cut(s)	552, 577
BssT1I	CCWWGG	1 cut(s)	1137
Bst1107I	GTATAC	1 cut(s)	571
Bst2UI	CCWGG	4 cut(s)	116, 133, 940, 1033
Bst4CI	ACNGT	4 cut(s)	363, 464, 734, 767
BstACI	GRCGYC	2 cut(s)	552, 577
BstAPI	GCANNNNNTGC	1 cut(s)	1194
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	3 cut(s)	181, 229, 1211
BstDEI	CTNAG	2 cut(s)	564, 978
BstDSI	CCRYGG	3 cut(s)	362, 497, 666
BstF5I	GGATG	3 cut(s)	147, 312, 507
BstFNI	CGCG	2 cut(s)	153, 499
BstH2I	RGCGCY	1 cut(s)	580
BstHHI	GCGC	4 cut(s)	155, 227, 579, 1230
BstKTI	GATC	8 cut(s)	7, 12, 250, 523, 681, 892, 1000, 1123
BstMAI	GTCTC	2 cut(s)	565, 954
BstMBI	GATC	8 cut(s)	4, 9, 247, 520, 678, 889, 997, 1120
BstMWI	GCNNNNNNNGC	8 cut(s)	135, 231, 240, 309, 583, 1194, 1206, 1227
BstNI	CCWGG	4 cut(s)	116, 133, 940, 1033
BstSCI	CCNGG	4 cut(s)	114, 131, 938, 1031
BstUI	CGCG	2 cut(s)	153, 499
BstV1I	GCAGC	7 cut(s)	125, 218, 299, 443, 598, 994, 1209
BstV2I	GAAGAC	2 cut(s)	207, 331
BstX2I	RGATCY	2 cut(s)	520, 678
BstXI	CCANNNNNNTGG	2 cut(s)	163, 307
BstYI	RGATCY	2 cut(s)	520, 678
BstZ17I	GTATAC	1 cut(s)	571
Bsu15I	ATCGAT	2 cut(s)	159, 996
BsuRI	GGCC	2 cut(s)	262, 1142
BsuTUI	ATCGAT	2 cut(s)	159, 996
BtgI	CCRYGG	3 cut(s)	362, 497, 666
BtsCI	GGATG	3 cut(s)	147, 312, 507
BtsIMutI	CAGTG	2 cut(s)	562, 772
Cac8I	GCNNGC	3 cut(s)	181, 229, 1211
CaiI	CAGNNNCTG	1 cut(s)	138
CciI	TCATGA	2 cut(s)	481, 628
CfoI	GCGC	4 cut(s)	155, 227, 579, 1230
Cfr10I	RCCGGY	1 cut(s)	709
Cfr42I	CCGCGG	1 cut(s)	500
ClaI	ATCGAT	2 cut(s)	159, 996
Csp6I	GTAC	1 cut(s)	645
CviAII	CATG	4 cut(s)	371, 482, 629, 1177
CviQI	GTAC	1 cut(s)	645
DdeI	CTNAG	2 cut(s)	564, 978
DinI	GGCGCC	1 cut(s)	578
DpnI	GATC	8 cut(s)	6, 11, 249, 522, 680, 891, 999, 1122
DpnII	GATC	8 cut(s)	4, 9, 247, 520, 678, 889, 997, 1120
DrdI	GACNNNNNNGTC	1 cut(s)	557
DseDI	GACNNNNNNGTC	1 cut(s)	557
EaeI	YGGCCR	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	1137
EcoRII	CCWGG	4 cut(s)	114, 131, 938, 1031
EcoT14I	CCWWGG	1 cut(s)	1137
EgeI	GGCGCC	1 cut(s)	578
EheI	GGCGCC	1 cut(s)	578
ErhI	CCWWGG	1 cut(s)	1137
FaeI	CATG	4 cut(s)	374, 485, 632, 1180
FaqI	GGGAC	2 cut(s)	281, 303
FatI	CATG	4 cut(s)	370, 481, 628, 1176
FauI	CCCGC	1 cut(s)	1169
FblI	GTMKAC	2 cut(s)	570, 1157
FokI	GGATG	3 cut(s)	134, 319, 514
FspBI	CTAG	4 cut(s)	228, 819, 1001, 1231
GlaI	GCGC	4 cut(s)	154, 226, 578, 1229
GsaI	CCCAGC	2 cut(s)	303, 387
GsuI	CTGGAG	1 cut(s)	115
HaeII	RGCGCY	1 cut(s)	580
HaeIII	GGCC	2 cut(s)	262, 1142
HapII	CCGG	2 cut(s)	710, 756
HhaI	GCGC	4 cut(s)	155, 227, 579, 1230
Hin1I	GRCGYC	2 cut(s)	552, 577
Hin1II	CATG	4 cut(s)	374, 485, 632, 1180
Hin6I	GCGC	4 cut(s)	153, 225, 577, 1228
HinP1I	GCGC	4 cut(s)	153, 225, 577, 1228
HpaII	CCGG	2 cut(s)	710, 756
HphI	GGTGA	1 cut(s)	800
Hpy166II	GTNNAC	5 cut(s)	272, 571, 690, 805, 1158
Hpy188III	TCNNGA	4 cut(s)	251, 482, 629, 851
Hpy8I	GTNNAC	5 cut(s)	272, 571, 690, 805, 1158
Hpy99I	CGWCG	1 cut(s)	645
HpyAV	CCTTC	4 cut(s)	1046, 1064, 1075, 1183
HpyCH4III	ACNGT	4 cut(s)	363, 464, 734, 767
HpyCH4IV	ACGT	1 cut(s)	552
HpyCH4V	TGCA	5 cut(s)	459, 470, 636, 1188, 1197
HpyF10VI	GCNNNNNNNGC	8 cut(s)	135, 231, 240, 309, 583, 1194, 1206, 1227
HpyF3I	CTNAG	2 cut(s)	564, 978
HpySE526I	ACGT	1 cut(s)	552
Hsp92I	GRCGYC	2 cut(s)	552, 577
Hsp92II	CATG	4 cut(s)	374, 485, 632, 1180
HspAI	GCGC	4 cut(s)	153, 225, 577, 1228
KasI	GGCGCC	1 cut(s)	576
KspI	CCGCGG	1 cut(s)	500
Kzo9I	GATC	8 cut(s)	4, 9, 247, 520, 678, 889, 997, 1120
LmnI	GCTCC	5 cut(s)	134, 166, 188, 332, 1035
Lsp1109I	GCAGC	7 cut(s)	125, 218, 299, 443, 598, 994, 1209
LweI	GCATC	1 cut(s)	994
MaeI	CTAG	4 cut(s)	228, 819, 1001, 1231
MaeII	ACGT	1 cut(s)	552
MaeIII	GTNAC	2 cut(s)	188, 548
MalI	GATC	8 cut(s)	6, 11, 249, 522, 680, 891, 999, 1122
MboI	GATC	8 cut(s)	4, 9, 247, 520, 678, 889, 997, 1120
MboII	GAAGA	3 cut(s)	131, 212, 331
MflI	RGATCY	2 cut(s)	520, 678
MhlI	GDGCHC	1 cut(s)	1132
MluCI	AATT	3 cut(s)	98, 965, 1063
Mly113I	GGCGCC	1 cut(s)	577
MlyI	GAGTC	2 cut(s)	76, 546
MmeI	TCCRAC	1 cut(s)	426
MnlI	CCTC	6 cut(s)	155, 406, 509, 615, 763, 784
MseI	TTAA	1 cut(s)	1215
MspA1I	CMGCKG	3 cut(s)	303, 499, 589
MspI	CCGG	2 cut(s)	710, 756
MspR9I	CCNGG	4 cut(s)	116, 133, 940, 1033
Mva1269I	GAATGC	1 cut(s)	1199
MvaI	CCWGG	4 cut(s)	116, 133, 940, 1033
MvnI	CGCG	2 cut(s)	153, 499
MwoI	GCNNNNNNNGC	8 cut(s)	135, 231, 240, 309, 583, 1194, 1206, 1227
NarI	GGCGCC	1 cut(s)	577
NdeII	GATC	8 cut(s)	4, 9, 247, 520, 678, 889, 997, 1120
NheI	GCTAGC	1 cut(s)	227
NlaIII	CATG	4 cut(s)	374, 485, 632, 1180
NlaIV	GGNNCC	2 cut(s)	328, 578
NmuCI	GTSAC	2 cut(s)	188, 548
NspV	TTCGAA	1 cut(s)	83
PagI	TCATGA	2 cut(s)	481, 628
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PctI	GAATGC	1 cut(s)	1199
PfeI	GAWTC	8 cut(s)	23, 43, 49, 55, 73, 85, 236, 752
PleI	GAGTC	2 cut(s)	75, 545
PluTI	GGCGCC	1 cut(s)	580
PpsI	GAGTC	2 cut(s)	75, 545
Psp6I	CCWGG	4 cut(s)	114, 131, 938, 1031
PspFI	CCCAGC	2 cut(s)	299, 383
PspGI	CCWGG	4 cut(s)	114, 131, 938, 1031
PspN4I	GGNNCC	2 cut(s)	328, 578
PstNI	CAGNNNCTG	1 cut(s)	138
PsuI	RGATCY	2 cut(s)	520, 678
PvuII	CAGCTG	1 cut(s)	303
RsaI	GTAC	1 cut(s)	646
RsaNI	GTAC	1 cut(s)	645
SacII	CCGCGG	1 cut(s)	500
SaqAI	TTAA	1 cut(s)	1215
Sau3AI	GATC	8 cut(s)	4, 9, 247, 520, 678, 889, 997, 1120
SchI	GAGTC	2 cut(s)	76, 546
ScrFI	CCNGG	4 cut(s)	116, 133, 940, 1033
SduI	GDGCHC	1 cut(s)	1132
SfaNI	GCATC	1 cut(s)	994
SfoI	GGCGCC	1 cut(s)	578
Sfr303I	CCGCGG	1 cut(s)	500
SfuI	TTCGAA	1 cut(s)	83
SgrBI	CCGCGG	1 cut(s)	500
SmlI	CTYRAG	1 cut(s)	1076
SmoI	CTYRAG	1 cut(s)	1076
Sse9I	AATT	3 cut(s)	98, 965, 1063
SsiI	CCGC	8 cut(s)	151, 259, 279, 348, 497, 499, 589, 1162
SspDI	GGCGCC	1 cut(s)	576
SspMI	CTAG	4 cut(s)	228, 819, 1001, 1231
StyD4I	CCNGG	4 cut(s)	114, 131, 938, 1031
StyI	CCWWGG	1 cut(s)	1137
TaaI	ACNGT	4 cut(s)	363, 464, 734, 767
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	4 cut(s)	83, 159, 723, 996
TasI	AATT	3 cut(s)	98, 965, 1063
TauI	GCSGC	3 cut(s)	262, 282, 351
TfiI	GAWTC	8 cut(s)	23, 43, 49, 55, 73, 85, 236, 752
Tru1I	TTAA	1 cut(s)	1215
Tru9I	TTAA	1 cut(s)	1215
TscAI	CASTG	2 cut(s)	562, 772
TseFI	GTSAC	2 cut(s)	188, 548
TseI	GCWGC	7 cut(s)	138, 231, 312, 456, 586, 982, 1197
Tsp45I	GTSAC	2 cut(s)	188, 548
TspDTI	ATGAA	2 cut(s)	213, 1165
TspGWI	ACGGA	2 cut(s)	79, 683
TspRI	CASTG	2 cut(s)	562, 772
XapI	RAATTY	2 cut(s)	965, 1063
XmiI	GTMKAC	2 cut(s)	570, 1157
XspI	CTAG	4 cut(s)	228, 819, 1001, 1231
ZraI	GACGTC	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.