Rmu_sc0006559.1_g000001

Lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006559.1
OG0008272
Physical Location & Seq
Reverse (-)
953 .. 3248
2296 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1443 bp
atgcaggttggctgtggagctggaaacactatttttccactggttgcgatatatgcagacatttttgtccatgcttgtgatttttcaccaaatgctgttaacttggttaagaaacataaagattttacagagtccagagttaatgcattcgtttgtgatttgaccattgacgatctgagcaagcagatatctccatcttcagtagatattgtaaccatgatttttgtgttatctgcagtatctccggagaagatgtctctggtagtgcagaatattagaaagattctcaagccaaatggtcgtgtgctatttcgcgattatgctactggtgaccttgctcaggaaagattaaattgcaaggaccaaaagattagtgaaaacttttatgccaggggtgatggcactagggctttctacttctctaatgagttcttgacaagcttatttaaagaaaatggttttgatgttgaggaacttgatctgtgctgcaaacaagttgaaaaccggtcgcgggagttggtaatgaataggcggtgggttcaagctgtattctgcctttcagatggtacaaactccaccaccaactcagaagctgcaatcagaatagaccatcctggaatggagatggatgttgacaataacatcttgaagaaacctgtaaacgatttggaggttgacatgtccgacggtgtggcaacagaaatgtttggtcttccaacttcgactgatggtgataatgaggtcattgagctcgagctgggaggttggactttcaaaatcaaagtgctatccaaagagtaccaacacacctgcaaatcaactggtttaatgttatgggaatcagctcggtttatggctcctgttttagcaagaaatccagctattttttctgggaaacgggtgttggagttggggtctggctgtgcaggcatttgctctatgattgctgctggatctgcagaccttgtgttcgccactgatggagacacaaaagcactcgacctactgacagaaaatgtcatgtcaaatcttagaccgccaatttcggacaaatttactacaagaatattagagtggggaaataaagaccatatagaagccatcaagcaagttaacagtggaggatttgatatcatattaggcacggatgtcacttacatacctgaagctattttgcccttgtttcaaactgcaaaggagttgatttcatctaacaacaaggatcaccaagcagccctaatcctgtgtcatatttttcgtcgagtagatgaaccttccatactatcagcagcttctcgatttggtttcaagctagtcgataagtggcctgtagaaattcttattaatccatcacaaagcatcatcaattcttggttccctgaaaacggctcagcggatgtttcaagggggccgttaaatattttgtacttccacaaggagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_12 Methyltransf_16 Methyltransf_23 Methyltransf_25

Protein Analysis

480

Amino Acids

53.29

Weight (kDa)

5.12

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_12 PF08242 2 - 102 1.4e-15 Methyltransferase domain
Methyltransf_25 PF13649 2 - 100 2.1e-11 Methyltransferase domain
Methyltransf_11 PF08241 2 - 104 5.1e-10 Methyltransferase domain
Methyltransf_23 PF13489 3 - 158 3.2e-10 Methyltransferase domain
Methyltransf_31 PF13847 3 - 117 1.8e-09 Methyltransferase domain
Methyltransf_16 PF10294 268 - 424 1.8e-15 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 818
AasI GACNNNNNNGTC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 818
AccII CGCG 2 cut(s) 315, 511
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 4 cut(s) 511, 532, 1037, 1394
AclWI GGATC 2 cut(s) 961, 1230
AcsI RAATTY 2 cut(s) 1052, 1335
AcuI CTGAAG 2 cut(s) 183, 1185
AfaI GTAC 3 cut(s) 568, 800, 1427
AfiI CCNNNNNNNGG 3 cut(s) 340, 511, 1385
AflIII ACRYGT 1 cut(s) 678
AgeI ACCGGT 1 cut(s) 504
AgsI TTSAA 7 cut(s) 500, 542, 649, 775, 1187, 1309, 1404
AjnI CCWGG 2 cut(s) 389, 613
AjuI GAANNNNNNNTTGG 2 cut(s) 887, 919
Alw21I GWGCWC 1 cut(s) 753
Alw26I GTCTC 2 cut(s) 261, 978
AlwI GGATC 2 cut(s) 961, 1230
AlwNI CAGNNNCTG 1 cut(s) 593
Ama87I CYCGRG 1 cut(s) 752
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 2 cut(s) 1325, 1409
ApeKI GCWGC 5 cut(s) 486, 593, 947, 1232, 1289
ApoI RAATTY 2 cut(s) 1052, 1335
ArsI GACNNNNNNTTYG 2 cut(s) 953, 985
AseI ATTAAT 1 cut(s) 1344
AsiGI ACCGGT 1 cut(s) 504
AspS9I GGNCC 2 cut(s) 361, 1409
AsuHPI GGTGA 5 cut(s) 78, 341, 407, 743, 1217
AvaI CYCGRG 1 cut(s) 752
AvaII GGWCC 1 cut(s) 361
BanII GRGCYC 1 cut(s) 753
BbsI GAAGAC 1 cut(s) 704
Bbv12I GWGCWC 1 cut(s) 753
BbvI GCAGC 5 cut(s) 473, 580, 934, 1244, 1301
BccI CCATC 9 cut(s) 202, 392, 557, 618, 619, 722, 974, 1109, 1357
BceAI ACGGC 2 cut(s) 1396, 1402
BciT130I CCWGG 2 cut(s) 391, 615
BcoDI GTCTC 2 cut(s) 261, 978
BfaI CTAG 2 cut(s) 405, 1313
BfmI CTRYAG 3 cut(s) 234, 957, 1329
BfuAI ACCTGC 1 cut(s) 818
BisI GCNGC 5 cut(s) 487, 594, 948, 1233, 1290
BlpI GCTNAGC 1 cut(s) 1390
BlsI GCNGC 5 cut(s) 488, 595, 949, 1234, 1291
Bme1390I CCNGG 2 cut(s) 391, 615
Bme18I GGWCC 1 cut(s) 361
BmeT110I CYCGRG 1 cut(s) 752
BmgT120I GGNCC 2 cut(s) 361, 1409
BmiI GGNNCC 3 cut(s) 858, 1376, 1410
BmrFI CCNGG 2 cut(s) 391, 615
BmsI GCATC 1 cut(s) 1368
BpiI GAAGAC 1 cut(s) 704
Bpu10I CCTNAGC 1 cut(s) 339
Bpu1102I GCTNAGC 1 cut(s) 1390
BpuEI CTTGAG 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 390
BsaWI WCCGGW 2 cut(s) 244, 504
BsaXI ACNNNNNCTCC 4 cut(s) 239, 269, 899, 929
Bsc4I CCNNNNNNNGG 3 cut(s) 340, 511, 1385
Bse118I RCCGGY 1 cut(s) 504
Bse1I ACTGG 3 cut(s) 45, 331, 826
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 2 cut(s) 391, 615
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 4 cut(s) 610, 634, 1153, 1402
BseLI CCNNNNNNNGG 3 cut(s) 340, 511, 1385
BseMII CTCAG 4 cut(s) 167, 353, 600, 1404
BseNI ACTGG 3 cut(s) 45, 331, 826
BseXI GCAGC 5 cut(s) 473, 580, 934, 1244, 1301
BseYI CCCAGC 1 cut(s) 757
BsgI GTGCAG 2 cut(s) 287, 945
Bsh1236I CGCG 2 cut(s) 315, 511
Bsh1285I CGRYCG 1 cut(s) 509
BshFI GGCC 2 cut(s) 1327, 1411
BshTI ACCGGT 1 cut(s) 504
BsiEI CGRYCG 1 cut(s) 509
BsiHKAI GWGCWC 1 cut(s) 753
BsiHKCI CYCGRG 1 cut(s) 752
BsiSI CCGG 2 cut(s) 245, 505
BslI CCNNNNNNNGG 3 cut(s) 340, 511, 1385
BsmAI GTCTC 2 cut(s) 261, 978
BsmI GAATGC 1 cut(s) 146
BsnI GGCC 2 cut(s) 1327, 1411
BsoBI CYCGRG 1 cut(s) 752
Bsp1286I GDGCHC 1 cut(s) 753
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 4 cut(s) 172, 478, 953, 1222
Bsp1720I GCTNAGC 1 cut(s) 1390
Bsp68I TCGCGA 1 cut(s) 315
BspACI CCGC 4 cut(s) 511, 532, 1037, 1394
BspANI GGCC 2 cut(s) 1327, 1411
BspCNI CTCAG 4 cut(s) 168, 352, 599, 1403
BspEI TCCGGA 1 cut(s) 244
BspFNI CGCG 2 cut(s) 315, 511
BspLI GGNNCC 3 cut(s) 858, 1376, 1410
BspMAI CTGCAG 2 cut(s) 238, 961
BspMI ACCTGC 1 cut(s) 818
BspPI GGATC 2 cut(s) 961, 1230
BsrFI RCCGGY 1 cut(s) 504
BsrI ACTGG 3 cut(s) 45, 331, 826
BssAI RCCGGY 1 cut(s) 504
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 4 cut(s) 172, 478, 953, 1222
Bst2UI CCWGG 2 cut(s) 391, 615
Bst4CI ACNGT 2 cut(s) 689, 1118
BstC8I GCNNGC 2 cut(s) 182, 928
BstDEI CTNAG 5 cut(s) 176, 339, 586, 1031, 1390
BstEII GGTNACC 1 cut(s) 329
BstENI CCTNNNNNAGG 1 cut(s) 338
BstF5I GGATG 4 cut(s) 610, 634, 1153, 1402
BstFNI CGCG 2 cut(s) 315, 511
BstKTI GATC 4 cut(s) 175, 481, 956, 1225
BstMAI GTCTC 2 cut(s) 261, 978
BstMBI GATC 4 cut(s) 172, 478, 953, 1222
BstMCI CGRYCG 1 cut(s) 509
BstMWI GCNNNNNNNGC 3 cut(s) 53, 927, 956
BstNI CCWGG 2 cut(s) 391, 615
BstNSI RCATGY 1 cut(s) 682
BstPI GGTNACC 1 cut(s) 329
BstSCI CCNGG 2 cut(s) 389, 613
BstSFI CTRYAG 3 cut(s) 234, 957, 1329
BstUI CGCG 2 cut(s) 315, 511
BstV1I GCAGC 5 cut(s) 473, 580, 934, 1244, 1301
BstV2I GAAGAC 1 cut(s) 704
BstX2I RGATCY 1 cut(s) 953
BstYI RGATCY 1 cut(s) 953
BsuRI GGCC 2 cut(s) 1327, 1411
BtsCI GGATG 4 cut(s) 610, 634, 1153, 1402
BtsIMutI CAGTG 3 cut(s) 38, 975, 1123
BtuMI TCGCGA 1 cut(s) 315
BveI ACCTGC 1 cut(s) 818
Cac8I GCNNGC 2 cut(s) 182, 928
CaiI CAGNNNCTG 1 cut(s) 593
Cfr10I RCCGGY 1 cut(s) 504
Cfr13I GGNCC 2 cut(s) 361, 1409
Csp6I GTAC 3 cut(s) 567, 799, 1426
CspAI ACCGGT 1 cut(s) 504
CviAII CATG 4 cut(s) 71, 217, 679, 1021
CviQI GTAC 3 cut(s) 567, 799, 1426
DdeI CTNAG 5 cut(s) 176, 339, 586, 1031, 1390
DpnI GATC 4 cut(s) 174, 480, 955, 1224
DpnII GATC 4 cut(s) 172, 478, 953, 1222
DraI TTTAAA 1 cut(s) 448
DrdI GACNNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 65
Ecl136II GAGCTC 1 cut(s) 751
Eco24I GRGCYC 1 cut(s) 753
Eco32I GATATC 2 cut(s) 189, 1132
Eco47I GGWCC 1 cut(s) 361
Eco53kI GAGCTC 1 cut(s) 751
Eco57I CTGAAG 2 cut(s) 183, 1185
Eco88I CYCGRG 1 cut(s) 752
Eco91I GGTNACC 1 cut(s) 329
EcoICRI GAGCTC 1 cut(s) 751
EcoNI CCTNNNNNAGG 1 cut(s) 338
EcoO65I GGTNACC 1 cut(s) 329
EcoRII CCWGG 2 cut(s) 389, 613
EcoRV GATATC 2 cut(s) 189, 1132
EcoT22I ATGCAT 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 753
FaeI CATG 4 cut(s) 74, 220, 682, 1024
FatI CATG 4 cut(s) 70, 216, 678, 1020
FauI CCCGC 1 cut(s) 504
Fnu4HI GCNGC 5 cut(s) 487, 594, 948, 1233, 1290
FokI GGATG 4 cut(s) 597, 641, 1160, 1409
FriOI GRGCYC 1 cut(s) 753
Fsp4HI GCNGC 5 cut(s) 487, 594, 948, 1233, 1290
FspBI CTAG 2 cut(s) 405, 1313
GluI GCNGC 5 cut(s) 487, 594, 948, 1233, 1290
GsaI CCCAGC 1 cut(s) 761
HaeIII GGCC 2 cut(s) 1327, 1411
HapII CCGG 2 cut(s) 245, 505
Hin1II CATG 4 cut(s) 74, 220, 682, 1024
HincII GTYRAC 4 cut(s) 100, 634, 676, 1114
HindII GTYRAC 4 cut(s) 100, 634, 676, 1114
HindIII AAGCTT 1 cut(s) 439
HinfI GANTC 3 cut(s) 131, 283, 839
HpaI GTTAAC 2 cut(s) 100, 1114
HpaII CCGG 2 cut(s) 245, 505
HphI GGTGA 5 cut(s) 78, 341, 407, 743, 1217
Hpy166II GTNNAC 5 cut(s) 100, 634, 661, 676, 1114
Hpy188I TCNGA 6 cut(s) 177, 562, 589, 602, 685, 1048
Hpy188III TCNNGA 7 cut(s) 135, 245, 314, 341, 433, 646, 1296
Hpy8I GTNNAC 5 cut(s) 100, 634, 661, 676, 1114
Hpy99I CGWCG 2 cut(s) 689, 1263
HpyAV CCTTC 1 cut(s) 1284
HpyCH4III ACNGT 2 cut(s) 689, 1118
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 927, 956
HpyF3I CTNAG 5 cut(s) 176, 339, 586, 1031, 1390
Hsp92II CATG 4 cut(s) 74, 220, 682, 1024
Kpn2I TCCGGA 1 cut(s) 244
KspAI GTTAAC 2 cut(s) 100, 1114
Kzo9I GATC 4 cut(s) 172, 478, 953, 1222
LmnI GCTCC 2 cut(s) 17, 862
Lsp1109I GCAGC 5 cut(s) 473, 580, 934, 1244, 1301
LweI GCATC 1 cut(s) 1368
MaeI CTAG 2 cut(s) 405, 1313
MaeIII GTNAC 3 cut(s) 211, 329, 1150
MalI GATC 4 cut(s) 174, 480, 955, 1224
MboI GATC 4 cut(s) 172, 478, 953, 1222
MboII GAAGA 4 cut(s) 189, 262, 661, 704
MflI RGATCY 1 cut(s) 953
MhlI GDGCHC 1 cut(s) 753
MluCI AATT 5 cut(s) 352, 1041, 1052, 1335, 1366
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 4 cut(s) 708, 740, 746, 885
MnlI CCTC 5 cut(s) 463, 664, 733, 755, 1115
Mph1103I ATGCAT 1 cut(s) 148
MroI TCCGGA 1 cut(s) 244
MseI TTAA 9 cut(s) 99, 108, 141, 350, 447, 827, 1113, 1344, 1415
MslI CAYNNNNRTG 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 1394
MspI CCGG 2 cut(s) 245, 505
MspR9I CCNGG 2 cut(s) 391, 615
Mva1269I GAATGC 1 cut(s) 146
MvaI CCWGG 2 cut(s) 391, 615
MvnI CGCG 2 cut(s) 315, 511
MwoI GCNNNNNNNGC 3 cut(s) 53, 927, 956
NdeII GATC 4 cut(s) 172, 478, 953, 1222
NlaIII CATG 4 cut(s) 74, 220, 682, 1024
NlaIV GGNNCC 3 cut(s) 858, 1376, 1410
NmuCI GTSAC 2 cut(s) 329, 1150
NruI TCGCGA 1 cut(s) 315
NsiI ATGCAT 1 cut(s) 148
NspI RCATGY 1 cut(s) 682
PaeR7I CTCGAG 1 cut(s) 752
PaqCI CACCTGC 1 cut(s) 818
PciI ACATGT 1 cut(s) 678
PctI GAATGC 1 cut(s) 146
PfeI GAWTC 2 cut(s) 283, 839
PfoI TCCNGGA 1 cut(s) 613
PinAI ACCGGT 1 cut(s) 504
PkrI GCNGC 5 cut(s) 488, 595, 949, 1234, 1291
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PscI ACATGT 1 cut(s) 678
PshBI ATTAAT 1 cut(s) 1344
Psp124BI GAGCTC 1 cut(s) 753
Psp6I CCWGG 2 cut(s) 389, 613
PspEI GGTNACC 1 cut(s) 329
PspFI CCCAGC 1 cut(s) 757
PspGI CCWGG 2 cut(s) 389, 613
PspN4I GGNNCC 3 cut(s) 858, 1376, 1410
PspPI GGNCC 2 cut(s) 361, 1409
PspXI VCTCGAGB 1 cut(s) 752
PsrI GAACNNNNNNTAC 2 cut(s) 1263, 1295
PstI CTGCAG 2 cut(s) 238, 961
PstNI CAGNNNCTG 1 cut(s) 593
PsuI RGATCY 1 cut(s) 953
RruI TCGCGA 1 cut(s) 315
RsaI GTAC 3 cut(s) 568, 800, 1427
RsaNI GTAC 3 cut(s) 567, 799, 1426
RseI CAYNNNNRTG 1 cut(s) 75
SacI GAGCTC 1 cut(s) 753
SaqAI TTAA 9 cut(s) 99, 108, 141, 350, 447, 827, 1113, 1344, 1415
SatI GCNGC 5 cut(s) 487, 594, 948, 1233, 1290
Sau3AI GATC 4 cut(s) 172, 478, 953, 1222
Sau96I GGNCC 2 cut(s) 361, 1409
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 2 cut(s) 391, 615
SduI GDGCHC 1 cut(s) 753
SfaNI GCATC 1 cut(s) 1368
SfcI CTRYAG 3 cut(s) 234, 957, 1329
Sfr274I CTCGAG 1 cut(s) 752
SinI GGWCC 1 cut(s) 361
SlaI CTCGAG 1 cut(s) 752
SmiMI CAYNNNNRTG 1 cut(s) 75
SmlI CTYRAG 2 cut(s) 287, 752
SmoI CTYRAG 2 cut(s) 287, 752
Sse9I AATT 5 cut(s) 352, 1041, 1052, 1335, 1366
SsiI CCGC 4 cut(s) 511, 532, 1037, 1394
SspI AATATT 3 cut(s) 274, 1068, 1420
SspMI CTAG 2 cut(s) 405, 1313
SstI GAGCTC 1 cut(s) 753
StyD4I CCNGG 2 cut(s) 389, 613
TaaI ACNGT 2 cut(s) 689, 1118
TaqI TCGA 6 cut(s) 722, 753, 999, 1261, 1297, 1317
TasI AATT 5 cut(s) 352, 1041, 1052, 1335, 1366
TatI WGTACW 1 cut(s) 1425
TfiI GAWTC 2 cut(s) 283, 839
Tru1I TTAA 9 cut(s) 99, 108, 141, 350, 447, 827, 1113, 1344, 1415
Tru9I TTAA 9 cut(s) 99, 108, 141, 350, 447, 827, 1113, 1344, 1415
TscAI CASTG 3 cut(s) 45, 982, 1123
TseFI GTSAC 2 cut(s) 329, 1150
TseI GCWGC 5 cut(s) 486, 593, 947, 1232, 1289
Tsp45I GTSAC 2 cut(s) 329, 1150
TspDTI ATGAA 3 cut(s) 539, 1197, 1284
TspGWI ACGGA 1 cut(s) 1160
TspRI CASTG 3 cut(s) 45, 982, 1123
VpaK11BI GGWCC 1 cut(s) 361
VspI ATTAAT 1 cut(s) 1344
XagI CCTNNNNNAGG 1 cut(s) 338
XapI RAATTY 2 cut(s) 1052, 1335
XceI RCATGY 1 cut(s) 682
XhoI CTCGAG 1 cut(s) 752
XspI CTAG 2 cut(s) 405, 1313
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.