Rmu_sc0006653.1_g000011

Belongs to the histone deacetylase family. HD Type 1 subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006653.1
OG0009070
Physical Location & Seq
Forward (+)
52527 .. 53174
648 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 648 bp
atggagatggagttgaggaagcattttacagtgtctttccatagatttggtgatttctttccggggactgcgcaagttgaagacattgaatcagtgggacttggggagaattattctttgaatgtacccctgaacgatggaatagatgatgaggattttcgttggttatttcgtcccgtaatagtgatggagatgtatcaaccggaggctgttgttcttcagtttggggcagattcgctaaccggggacaggttagggtgcttcaacttgtctatcaaaggccatgcggattgtcttcgtttcctgcttagatcgtttaatgtccctttgatggtcttgggcgggggaggttatacgattcggaatgttgttcgttgctggtgttatgagacggcagtagcaatcggagcggaacttgatgatcagttgcctgacaacgactactatgattattttggtccaaattacactcttcatattgacacatgtgacatgaagaacctgaacaaacctgaaaagttggtggagatgaggaataagctgctagctagaccagatttgcagattacctcatgcacccagcgttccatttctgacaacaccatcaattacacaagttccggaggaggcggaagacaatatggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004407 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006476 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009553 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009845 GO:0009892 GO:0009941 GO:0009987 GO:0010033 GO:0010154 GO:0010228 GO:0010431 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016043 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016575 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019222 GO:0019538 GO:0021700 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032504 GO:0033558 GO:0033993 GO:0035601 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048316 GO:0048519 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090351 GO:0097305 GO:0098732 GO:0140096 GO:1901564 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04110 ko04213 ko04330 ko04919 ko05016 ko05034 ko05165 ko05169 ko05200 ko05202 ko05203 ko05220 map04110 map04213 map04330 map04919 map05016 map05034 map05165 map05169 map05200 map05202 map05203 map05220
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

215

Amino Acids

24.34

Weight (kDa)

4.74

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 9 - 132 2.7e-28 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 72
AccBSI CCGCTC 1 cut(s) 410
AccIII TCCGGA 1 cut(s) 620
AciI CCGC 4 cut(s) 287, 342, 410, 630
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 249, 331
AflIII ACRYGT 1 cut(s) 485
AgsI TTSAA 4 cut(s) 80, 89, 121, 265
AluBI AGCT 2 cut(s) 541, 548
AluI AGCT 2 cut(s) 541, 548
Alw26I GTCTC 1 cut(s) 383
Aor13HI TCCGGA 1 cut(s) 620
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 541
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 458
AsuC2I CCSGG 2 cut(s) 63, 244
AsuHPI GGTGA 1 cut(s) 62
AsuNHI GCTAGC 1 cut(s) 544
AvaII GGWCC 1 cut(s) 458
BbsI GAAGAC 3 cut(s) 87, 287, 640
BbvI GCAGC 1 cut(s) 528
BccI CCATC 4 cut(s) 131, 181, 325, 611
BceAI ACGGC 1 cut(s) 408
BclI TGATCA 1 cut(s) 421
BcnI CCSGG 2 cut(s) 63, 244
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 2 cut(s) 545, 549
BisI GCNGC 1 cut(s) 542
BlsI GCNGC 1 cut(s) 543
Bme1390I CCNGG 2 cut(s) 63, 244
Bme18I GGWCC 1 cut(s) 458
BmgT120I GGNCC 1 cut(s) 458
BmrFI CCNGG 2 cut(s) 63, 244
BmtI GCTAGC 1 cut(s) 548
BpiI GAAGAC 3 cut(s) 87, 287, 640
BpuMI CCSGG 2 cut(s) 63, 244
BsaJI CCNNGG 2 cut(s) 62, 243
BsaWI WCCGGW 2 cut(s) 202, 620
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 331
BseAI TCCGGA 1 cut(s) 620
BseDI CCNNGG 2 cut(s) 62, 243
BseLI CCNNNNNNNGG 2 cut(s) 249, 331
BseRI GAGGAG 1 cut(s) 639
BseXI GCAGC 1 cut(s) 528
BseYI CCCAGC 1 cut(s) 579
BshFI GGCC 1 cut(s) 282
BsiSI CCGG 4 cut(s) 62, 203, 243, 621
BslFI GGGAC 5 cut(s) 79, 111, 159, 260, 308
BslI CCNNNNNNNGG 2 cut(s) 249, 331
BsmAI GTCTC 1 cut(s) 383
BsmBI CGTCTC 1 cut(s) 383
BsmFI GGGAC 5 cut(s) 79, 111, 159, 260, 308
BsnI GGCC 1 cut(s) 282
Bsp13I TCCGGA 1 cut(s) 620
Bsp143I GATC 2 cut(s) 311, 421
BspACI CCGC 4 cut(s) 287, 342, 410, 630
BspANI GGCC 1 cut(s) 282
BspEI TCCGGA 1 cut(s) 620
BspOI GCTAGC 1 cut(s) 548
BsrBI CCGCTC 1 cut(s) 410
BssECI CCNNGG 2 cut(s) 62, 243
BssMI GATC 2 cut(s) 311, 421
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 477
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 1 cut(s) 308
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 2 cut(s) 314, 424
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 2 cut(s) 311, 421
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstNSI RCATGY 1 cut(s) 489
BstSCI CCNGG 2 cut(s) 61, 242
BstV1I GCAGC 1 cut(s) 528
BstV2I GAAGAC 3 cut(s) 87, 287, 640
BstXI CCANNNNNNTGG 1 cut(s) 47
BsuRI GGCC 1 cut(s) 282
BtsIMutI CAGTG 2 cut(s) 36, 99
Cac8I GCNNGC 1 cut(s) 546
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 458
Csp6I GTAC 1 cut(s) 125
CviAII CATG 4 cut(s) 284, 486, 493, 573
CviJI RGCY 4 cut(s) 209, 282, 541, 548
CviKI_1 RGCY 4 cut(s) 209, 282, 541, 548
CviQI GTAC 1 cut(s) 125
DdeI CTNAG 1 cut(s) 308
DpnI GATC 2 cut(s) 313, 423
DpnII GATC 2 cut(s) 311, 421
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
EciI GGCGGA 1 cut(s) 645
Eco47I GGWCC 1 cut(s) 458
Eco57I CTGAAG 1 cut(s) 203
Esp3I CGTCTC 1 cut(s) 383
FaeI CATG 4 cut(s) 287, 489, 496, 576
FaqI GGGAC 5 cut(s) 79, 111, 159, 260, 308
FatI CATG 4 cut(s) 283, 485, 492, 572
FauI CCCGC 1 cut(s) 335
FbaI TGATCA 1 cut(s) 421
Fnu4HI GCNGC 1 cut(s) 542
Fsp4HI GCNGC 1 cut(s) 542
FspBI CTAG 2 cut(s) 545, 549
FspI TGCGCA 1 cut(s) 72
GlaI GCGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 542
GsaI CCCAGC 1 cut(s) 583
HaeIII GGCC 1 cut(s) 282
HapII CCGG 4 cut(s) 62, 203, 243, 621
HhaI GCGC 1 cut(s) 73
Hin1II CATG 4 cut(s) 287, 489, 496, 576
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 3 cut(s) 89, 233, 358
HpaII CCGG 4 cut(s) 62, 203, 243, 621
HphI GGTGA 1 cut(s) 62
Hpy188I TCNGA 3 cut(s) 363, 407, 595
Hpy188III TCNNGA 1 cut(s) 621
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 562, 576
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpyF3I CTNAG 1 cut(s) 308
Hsp92II CATG 4 cut(s) 287, 489, 496, 576
HspAI GCGC 1 cut(s) 71
Kpn2I TCCGGA 1 cut(s) 620
Ksp22I TGATCA 1 cut(s) 421
Kzo9I GATC 2 cut(s) 311, 421
LmnI GCTCC 1 cut(s) 407
Lsp1109I GCAGC 1 cut(s) 528
MaeI CTAG 2 cut(s) 545, 549
MaeIII GTNAC 1 cut(s) 488
MalI GATC 2 cut(s) 313, 423
MbiI CCGCTC 1 cut(s) 410
MboI GATC 2 cut(s) 311, 421
MboII GAAGA 6 cut(s) 92, 209, 287, 464, 508, 645
MluCI AATT 3 cut(s) 109, 463, 607
MnlI CCTC 8 cut(s) 9, 145, 199, 341, 525, 580, 617, 620
MroI TCCGGA 1 cut(s) 620
MseI TTAA 1 cut(s) 318
MspI CCGG 4 cut(s) 62, 203, 243, 621
MspR9I CCNGG 2 cut(s) 63, 244
MwoI GCNNNNNNNGC 1 cut(s) 407
NciI CCSGG 2 cut(s) 63, 244
NdeII GATC 2 cut(s) 311, 421
NheI GCTAGC 1 cut(s) 544
NlaIII CATG 4 cut(s) 287, 489, 496, 576
NmuCI GTSAC 1 cut(s) 488
NsbI TGCGCA 1 cut(s) 72
NspI RCATGY 1 cut(s) 489
PciI ACATGT 1 cut(s) 485
PfeI GAWTC 3 cut(s) 89, 233, 358
PkrI GCNGC 1 cut(s) 543
PscI ACATGT 1 cut(s) 485
PspFI CCCAGC 1 cut(s) 579
PspPI GGNCC 1 cut(s) 458
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 1 cut(s) 542
Sau3AI GATC 2 cut(s) 311, 421
Sau96I GGNCC 1 cut(s) 458
ScrFI CCNGG 2 cut(s) 63, 244
SetI ASST 7 cut(s) 254, 352, 504, 514, 543, 550, 572
SinI GGWCC 1 cut(s) 458
Sse9I AATT 3 cut(s) 109, 463, 607
SsiI CCGC 4 cut(s) 287, 342, 410, 630
SspMI CTAG 2 cut(s) 545, 549
StyD4I CCNGG 2 cut(s) 61, 242
TaaI ACNGT 1 cut(s) 31
TasI AATT 3 cut(s) 109, 463, 607
TfiI GAWTC 3 cut(s) 89, 233, 358
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 2 cut(s) 36, 99
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 1 cut(s) 541
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 2 cut(s) 464, 509
TspRI CASTG 2 cut(s) 36, 99
VpaK11BI GGWCC 1 cut(s) 458
XceI RCATGY 1 cut(s) 489
XspI CTAG 2 cut(s) 545, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.