Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006766.1

Orthogroup ID

OG0018258

Physical Location & Seq

Genomic Coordinates Reverse (-)

65208 .. 65647

Gene Structure 440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006766.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

atgatcatgaagaagaatgggttgatcttcaacatgagcggttcaagctcttgctacttcctactgaagttcctgatcgagctccgaggaccgaggagttggactcgatcttttgagggacataagctccagatcgagctccgaggaccgatggtgtggcgtcacagcgccattttaggttgggaagtcgcagttgtggcggggcttattggtgggagtggtggagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

76

Amino Acids

8.39

Weight (kDa)

10.17

Isoelectric Point (pI)

59.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018258)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003065.1_g000003 Rmu_sc0006766.1_g000014 Rmu_sc0016399.1_g000001 Rmu_sc0018760.1_g000002
rosa_samantha	Rh3AG198200 Rh3CG222700 Rh4DG093300 Rh4DG175000 Rh5CG219600 Rh5DG202000 Rh6BG282800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	39
AciI	CCGC	2 cut(s)	39, 200
AcuI	CTGAAG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	31, 45
AluBI	AGCT	4 cut(s)	48, 82, 127, 139
AluI	AGCT	4 cut(s)	48, 82, 127, 139
Alw21I	GWGCWC	2 cut(s)	84, 141
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	2 cut(s)	89, 146
AvaII	GGWCC	2 cut(s)	89, 146
BanII	GRGCYC	2 cut(s)	84, 141
Bbv12I	GWGCWC	2 cut(s)	84, 141
BccI	CCATC	1 cut(s)	145
BclI	TGATCA	1 cut(s)	3
BfoI	RGCGCY	1 cut(s)	171
Bme18I	GGWCC	2 cut(s)	89, 146
BmgT120I	GGNCC	2 cut(s)	89, 146
BplI	GAGNNNNNCTC	2 cut(s)	88, 120
BpmI	CTGGAG	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	160
BsaJI	CCNNGG	3 cut(s)	85, 92, 142
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
BseDI	CCNNGG	3 cut(s)	85, 92, 142
BseRI	GAGGAG	1 cut(s)	109
BsiHKAI	GWGCWC	2 cut(s)	84, 141
BslFI	GGGAC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	84, 141
Bsp143I	GATC	5 cut(s)	3, 24, 75, 107, 132
BspACI	CCGC	2 cut(s)	39, 200
BspHI	TCATGA	1 cut(s)	6
BsrBI	CCGCTC	1 cut(s)	39
BssECI	CCNNGG	3 cut(s)	85, 92, 142
BssMI	GATC	5 cut(s)	3, 24, 75, 107, 132
BssNI	GRCGYC	1 cut(s)	160
BstACI	GRCGYC	1 cut(s)	160
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	5 cut(s)	6, 27, 78, 110, 135
BstMBI	GATC	5 cut(s)	3, 24, 75, 107, 132
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 197
CciI	TCATGA	1 cut(s)	6
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	2 cut(s)	89, 146
CseI	GACGC	1 cut(s)	149
CviAII	CATG	3 cut(s)	7, 34, 228
CviJI	RGCY	5 cut(s)	48, 82, 127, 139, 205
CviKI_1	RGCY	5 cut(s)	48, 82, 127, 139, 205
DpnI	GATC	5 cut(s)	5, 26, 77, 109, 134
DpnII	GATC	5 cut(s)	3, 24, 75, 107, 132
Ecl136II	GAGCTC	2 cut(s)	82, 139
Eco24I	GRGCYC	2 cut(s)	84, 141
Eco47I	GGWCC	2 cut(s)	89, 146
Eco53kI	GAGCTC	2 cut(s)	82, 139
Eco57I	CTGAAG	1 cut(s)	86
EcoICRI	GAGCTC	2 cut(s)	82, 139
EcoT38I	GRGCYC	2 cut(s)	84, 141
FaeI	CATG	3 cut(s)	10, 37, 231
FaiI	YATR	4 cut(s)	8, 35, 123, 229
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	3 cut(s)	6, 33, 227
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	3
FriOI	GRGCYC	2 cut(s)	84, 141
GlaI	GCGC	1 cut(s)	169
GsuI	CTGGAG	1 cut(s)	113
HaeII	RGCGCY	1 cut(s)	171
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	160
Hin1II	CATG	3 cut(s)	10, 37, 231
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HinfI	GANTC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	86, 143
Hpy188III	TCNNGA	3 cut(s)	7, 73, 130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 197
Hsp92I	GRCGYC	1 cut(s)	160
Hsp92II	CATG	3 cut(s)	10, 37, 231
HspAI	GCGC	1 cut(s)	168
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 24, 75, 107, 132
LmnI	GCTCC	4 cut(s)	87, 132, 144, 224
LpnPI	CCDG	2 cut(s)	86, 143
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	5 cut(s)	5, 26, 77, 109, 134
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	5 cut(s)	3, 24, 75, 107, 132
MboII	GAAGA	3 cut(s)	19, 22, 25
MhlI	GDGCHC	2 cut(s)	84, 141
MlyI	GAGTC	1 cut(s)	97
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	4 cut(s)	80, 87, 109, 137
MwoI	GCNNNNNNNGC	2 cut(s)	45, 197
NdeII	GATC	5 cut(s)	3, 24, 75, 107, 132
NlaIII	CATG	3 cut(s)	10, 37, 231
NmuCI	GTSAC	1 cut(s)	161
PagI	TCATGA	1 cut(s)	6
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
Psp124BI	GAGCTC	2 cut(s)	84, 141
PspPI	GGNCC	2 cut(s)	89, 146
SacI	GAGCTC	2 cut(s)	84, 141
Sau3AI	GATC	5 cut(s)	3, 24, 75, 107, 132
Sau96I	GGNCC	2 cut(s)	89, 146
SchI	GAGTC	1 cut(s)	97
SduI	GDGCHC	2 cut(s)	84, 141
SetI	ASST	5 cut(s)	50, 84, 129, 141, 181
SinI	GGWCC	2 cut(s)	89, 146
SsiI	CCGC	2 cut(s)	39, 200
SstI	GAGCTC	2 cut(s)	84, 141
TaqI	TCGA	3 cut(s)	78, 106, 135
TaqII	GACCGA	2 cut(s)	106, 163
TseFI	GTSAC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	23
VpaK11BI	GGWCC	2 cut(s)	89, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.