Rh3CG222700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0018258
Physical Location & Seq
Forward (+)
20770193 .. 20770648
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG222700.1

Sequence Viewer

Length: 456 bp
ATGGAGGGTTCGGGAGAGAAAGGGGAGGAGGCGGTGGGTGAGGAAGGAGAGGCAGGGGGTGCACTTGAGCCAGAGGCGGCGGAGCAAGTGTGGGCCGGAGGGGCCGGAGGTGGAGGACATGGGCTGGAGGTAGGCCCAGGCGGCCTGCTTGACAAGGCGGTTGCGGATGGAGATCTCGTAGCCGGAGTTGGTGGAGTTGGGCGACGGGGACTGGACGGCGGCGAAGGAGGAGGAGGGGAGGAGGTCCTTGAGGGAGGTGTAGGACTCGGAGAGAAGCTCCAGGTCGAGCTGCGGCGGCCGATGGCGCGGCGTCACGGCGCCGTTTTGGGGTGGGAAGCTGCAGCTGTGGCGGGGCATATTATTGGTGGGAGTGGTGGGACTGGTGGAGAGGTGGCTGAGCTTGGTGGCGACGACGACGGAGGTGGAGATGGAGTTGCGGCGGCGGAGCTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

14.18

Weight (kDa)

4.19

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 317
AccII CGCG 1 cut(s) 307
AcoI YGGCCR 1 cut(s) 296
AcyI GRCGYC 2 cut(s) 310, 318
AfiI CCNNNNNNNGG 1 cut(s) 327
AjnI CCWGG 2 cut(s) 136, 279
AluBI AGCT 6 cut(s) 277, 289, 338, 344, 400, 448
AluI AGCT 6 cut(s) 277, 289, 338, 344, 400, 448
Alw21I GWGCWC 1 cut(s) 64
Alw44I GTGCAC 1 cut(s) 60
AoxI GGCC 5 cut(s) 93, 102, 133, 142, 296
ApaLI GTGCAC 1 cut(s) 60
ApeKI GCWGC 3 cut(s) 289, 338, 341
AspLEI GCGC 2 cut(s) 307, 320
AspS9I GGNCC 4 cut(s) 93, 102, 134, 244
AsuHPI GGTGA 1 cut(s) 50
AvaII GGWCC 1 cut(s) 244
BaeGI GKGCMC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 3 cut(s) 276, 325, 353
BccI CCATC 3 cut(s) 161, 295, 422
BceAI ACGGC 3 cut(s) 232, 305, 331
BciT130I CCWGG 2 cut(s) 138, 281
BfmI CTRYAG 1 cut(s) 339
BfoI RGCGCY 1 cut(s) 321
BglI GCCNNNNNGGC 2 cut(s) 101, 141
BglII AGATCT 1 cut(s) 172
BlpI GCTNAGC 1 cut(s) 396
Bme1390I CCNGG 2 cut(s) 138, 281
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 4 cut(s) 93, 102, 134, 244
BmiI GGNNCC 2 cut(s) 103, 319
BmrFI CCNGG 2 cut(s) 138, 281
BplI GAGNNNNNCTC 2 cut(s) 261, 293
BpmI CTGGAG 2 cut(s) 146, 263
Bpu1102I GCTNAGC 1 cut(s) 396
BpuEI CTTGAG 2 cut(s) 86, 269
BsaBI GATNNNNATC 1 cut(s) 171
BsaHI GRCGYC 2 cut(s) 310, 318
BsaJI CCNNGG 1 cut(s) 136
BsaXI ACNNNNNCTCC 6 cut(s) 74, 104, 162, 192, 417, 447
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse1I ACTGG 2 cut(s) 216, 385
Bse8I GATNNNNATC 1 cut(s) 171
BseBI CCWGG 2 cut(s) 138, 281
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 172
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 327
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 2 cut(s) 216, 385
BseRI GAGGAG 4 cut(s) 41, 243, 246, 254
BseSI GKGCMC 1 cut(s) 64
BseX3I CGGCCG 1 cut(s) 296
BseXI GCAGC 3 cut(s) 276, 325, 353
Bsh1236I CGCG 1 cut(s) 307
Bsh1285I CGRYCG 1 cut(s) 299
BshFI GGCC 5 cut(s) 95, 104, 135, 144, 298
BshNI GGYRCC 1 cut(s) 317
BsiEI CGRYCG 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 64
BsiSI CCGG 3 cut(s) 96, 105, 183
BslFI GGGAC 2 cut(s) 222, 391
BslI CCNNNNNNNGG 1 cut(s) 327
BsmFI GGGAC 2 cut(s) 222, 391
BsnI GGCC 5 cut(s) 95, 104, 135, 144, 298
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 172
Bsp1720I GCTNAGC 1 cut(s) 396
BspANI GGCC 5 cut(s) 95, 104, 135, 144, 298
BspCNI CTCAG 1 cut(s) 388
BspFNI CGCG 1 cut(s) 307
BspLI GGNNCC 2 cut(s) 103, 319
BspMAI CTGCAG 1 cut(s) 343
BspT107I GGYRCC 1 cut(s) 317
BsrI ACTGG 2 cut(s) 216, 385
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 1 cut(s) 172
BssNI GRCGYC 2 cut(s) 310, 318
Bst2UI CCWGG 2 cut(s) 138, 281
BstACI GRCGYC 2 cut(s) 310, 318
BstAPI GCANNNNNTGC 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 396
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 307
BstH2I RGCGCY 1 cut(s) 321
BstHHI GCGC 2 cut(s) 307, 320
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstMCI CGRYCG 1 cut(s) 299
BstMWI GCNNNNNNNGC 6 cut(s) 59, 101, 141, 295, 304, 347
BstNI CCWGG 2 cut(s) 138, 281
BstSCI CCNGG 2 cut(s) 136, 279
BstSFI CTRYAG 1 cut(s) 339
BstSLI GKGCMC 1 cut(s) 64
BstUI CGCG 1 cut(s) 307
BstV1I GCAGC 3 cut(s) 276, 325, 353
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BstZI CGGCCG 1 cut(s) 296
BsuRI GGCC 5 cut(s) 95, 104, 135, 144, 298
BtsCI GGATG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 146
CfoI GCGC 2 cut(s) 307, 320
Cfr13I GGNCC 4 cut(s) 93, 102, 134, 244
CseI GACGC 1 cut(s) 299
CviAII CATG 2 cut(s) 119, 453
DdeI CTNAG 1 cut(s) 396
DinI GGCGCC 1 cut(s) 319
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 296
EagI CGGCCG 1 cut(s) 296
EciI GGCGGA 1 cut(s) 95
EclXI CGGCCG 1 cut(s) 296
Eco47I GGWCC 1 cut(s) 244
Eco52I CGGCCG 1 cut(s) 296
EcoO109I RGGNCCY 1 cut(s) 244
EcoRII CCWGG 2 cut(s) 136, 279
EgeI GGCGCC 1 cut(s) 319
EheI GGCGCC 1 cut(s) 319
FaeI CATG 2 cut(s) 122, 456
FaiI YATR 3 cut(s) 120, 357, 454
FaqI GGGAC 2 cut(s) 222, 391
FatI CATG 2 cut(s) 118, 452
FauI CCCGC 1 cut(s) 343
FokI GGATG 1 cut(s) 179
GlaI GCGC 2 cut(s) 306, 319
GsuI CTGGAG 2 cut(s) 146, 263
HaeII RGCGCY 1 cut(s) 321
HaeIII GGCC 5 cut(s) 95, 104, 135, 144, 298
HapII CCGG 3 cut(s) 96, 105, 183
HgaI GACGC 1 cut(s) 299
HhaI GCGC 2 cut(s) 307, 320
Hin1I GRCGYC 2 cut(s) 310, 318
Hin1II CATG 2 cut(s) 122, 456
Hin6I GCGC 2 cut(s) 305, 318
HinP1I GCGC 2 cut(s) 305, 318
HinfI GANTC 1 cut(s) 264
HpaII CCGG 3 cut(s) 96, 105, 183
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 1 cut(s) 269
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 1 cut(s) 62
Hpy99I CGWCG 4 cut(s) 207, 413, 416, 419
HpyAV CCTTC 2 cut(s) 38, 218
HpyCH4V TGCA 2 cut(s) 62, 341
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 101, 141, 295, 304, 347
HpyF3I CTNAG 1 cut(s) 396
Hsp92I GRCGYC 2 cut(s) 310, 318
Hsp92II CATG 2 cut(s) 122, 456
HspAI GCGC 2 cut(s) 305, 318
KasI GGCGCC 1 cut(s) 317
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 3 cut(s) 82, 282, 445
Lsp1109I GCAGC 3 cut(s) 276, 325, 353
MaeIII GTNAC 1 cut(s) 311
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 64
Mly113I GGCGCC 1 cut(s) 318
MlyI GAGTC 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 3 cut(s) 96, 105, 183
MspR9I CCNGG 2 cut(s) 138, 281
MvaI CCWGG 2 cut(s) 138, 281
MvnI CGCG 1 cut(s) 307
MwoI GCNNNNNNNGC 6 cut(s) 59, 101, 141, 295, 304, 347
NarI GGCGCC 1 cut(s) 318
NdeII GATC 1 cut(s) 172
NlaIII CATG 2 cut(s) 122, 456
NlaIV GGNNCC 2 cut(s) 103, 319
NmuCI GTSAC 1 cut(s) 311
PleI GAGTC 1 cut(s) 258
PluTI GGCGCC 1 cut(s) 321
PpsI GAGTC 1 cut(s) 258
PpuMI RGGWCCY 1 cut(s) 244
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 2 cut(s) 136, 279
PspGI CCWGG 2 cut(s) 136, 279
PspN4I GGNNCC 2 cut(s) 103, 319
PspPI GGNCC 4 cut(s) 93, 102, 134, 244
PspPPI RGGWCCY 1 cut(s) 244
PstI CTGCAG 1 cut(s) 343
PsuI RGATCY 1 cut(s) 172
PvuII CAGCTG 1 cut(s) 344
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 4 cut(s) 93, 102, 134, 244
SchI GAGTC 1 cut(s) 258
ScrFI CCNGG 2 cut(s) 138, 281
SduI GDGCHC 1 cut(s) 64
SfcI CTRYAG 1 cut(s) 339
SfiI GGCCNNNNNGGCC 2 cut(s) 101, 141
SfoI GGCGCC 1 cut(s) 319
SinI GGWCC 1 cut(s) 244
SmlI CTYRAG 2 cut(s) 65, 248
SmoI CTYRAG 2 cut(s) 65, 248
SspDI GGCGCC 1 cut(s) 317
StyD4I CCNGG 2 cut(s) 136, 279
TaqI TCGA 1 cut(s) 285
TauI GCSGC 8 cut(s) 80, 144, 222, 295, 298, 310, 440, 443
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 3 cut(s) 289, 338, 341
Tsp45I GTSAC 1 cut(s) 311
TspGWI ACGGA 1 cut(s) 432
VneI GTGCAC 1 cut(s) 60
VpaK11BI GGWCC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.