Rmu_sc0018760.1_g000002

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018760.1
OG0018258
Physical Location & Seq
Reverse (-)
312 .. 2032
1721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018760.1_g000002.1.cds

Sequence Viewer

Length: 423 bp
atgccacttgttgcagcaaccaaaaactttgggactactagtgtaccagttgctgcagcaatagctctcaggaacagtcttgttttggccaagcggaaaggatatactaatatacatgcagaaggagactccaagttagtcattgatgctgtggaaggaagattcaagctcttctggttaagtttccagcaaaacccaattggggagaagatccaacagcaaacccaacaaccactccggagaggtaggggtgcacttgagccagaggcggcggagcaagtgtgggctgcaaatggaggacgcaagatggagataggcccaggcgacttgcttgacgaggcggttatggttggagatctcgtagccggagttggtgctcaagttgggcgtcggggactggatggagatgaaagacgaggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

140

Amino Acids

14.99

Weight (kDa)

9.15

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 237
AciI CCGC 4 cut(s) 94, 269, 272, 341
AclWI GGATC 1 cut(s) 205
AcoI YGGCCR 1 cut(s) 87
AcyI GRCGYC 1 cut(s) 388
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 202
AgsI TTSAA 1 cut(s) 166
AhlI ACTAGT 1 cut(s) 38
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 2 cut(s) 65, 169
AluI AGCT 2 cut(s) 65, 169
Alw21I GWGCWC 2 cut(s) 256, 379
Alw26I GTCTC 1 cut(s) 120
Alw44I GTGCAC 1 cut(s) 252
AlwI GGATC 1 cut(s) 205
AlwNI CAGNNNCTG 1 cut(s) 53
Aor13HI TCCGGA 1 cut(s) 237
AoxI GGCC 2 cut(s) 87, 316
ApaLI GTGCAC 1 cut(s) 252
ApeKI GCWGC 4 cut(s) 14, 53, 56, 287
AspS9I GGNCC 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 256
BaeI ACNNNNGTAYC 2 cut(s) 27, 60
BalI TGGCCA 1 cut(s) 89
Bbv12I GWGCWC 2 cut(s) 256, 379
BbvI GCAGC 4 cut(s) 26, 40, 68, 274
BccI CCATC 2 cut(s) 301, 395
BciT130I CCWGG 1 cut(s) 321
BcoDI GTCTC 1 cut(s) 120
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 1 cut(s) 39
BfmI CTRYAG 1 cut(s) 54
BglII AGATCT 1 cut(s) 355
BisI GCNGC 5 cut(s) 15, 54, 57, 270, 288
BlsI GCNGC 5 cut(s) 16, 55, 58, 271, 289
Bme1390I CCNGG 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 317
BmrFI CCNGG 1 cut(s) 321
BmsI GCATC 1 cut(s) 136
BpuEI CTTGAG 2 cut(s) 278, 363
BsaHI GRCGYC 1 cut(s) 388
BsaJI CCNNGG 1 cut(s) 319
BsaWI WCCGGW 1 cut(s) 237
BsaXI ACNNNNNCTCC 6 cut(s) 219, 249, 266, 296, 345, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse1I ACTGG 2 cut(s) 47, 402
BseAI TCCGGA 1 cut(s) 237
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 319
BseGI GGATG 1 cut(s) 406
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMII CTCAG 1 cut(s) 82
BseNI ACTGG 2 cut(s) 47, 402
BseSI GKGCMC 1 cut(s) 256
BseXI GCAGC 4 cut(s) 26, 40, 68, 274
BshFI GGCC 2 cut(s) 89, 318
BsiHKAI GWGCWC 2 cut(s) 256, 379
BsiSI CCGG 2 cut(s) 238, 366
BslFI GGGAC 2 cut(s) 46, 408
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 2 cut(s) 46, 408
BsnI GGCC 2 cut(s) 89, 318
Bsp1286I GDGCHC 2 cut(s) 256, 379
Bsp13I TCCGGA 1 cut(s) 237
Bsp143I GATC 2 cut(s) 210, 355
BspACI CCGC 4 cut(s) 94, 269, 272, 341
BspANI GGCC 2 cut(s) 89, 318
BspCNI CTCAG 1 cut(s) 81
BspEI TCCGGA 1 cut(s) 237
BspMAI CTGCAG 1 cut(s) 58
BspPI GGATC 1 cut(s) 205
BspQI GCTCTTC 1 cut(s) 176
BsrI ACTGG 2 cut(s) 47, 402
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 2 cut(s) 210, 355
BssNI GRCGYC 1 cut(s) 388
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 176
BstACI GRCGYC 1 cut(s) 388
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 406
BstKTI GATC 2 cut(s) 213, 358
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 2 cut(s) 210, 355
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 321
BstNSI RCATGY 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 319
BstSFI CTRYAG 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 256
BstV1I GCAGC 4 cut(s) 26, 40, 68, 274
BstX2I RGATCY 2 cut(s) 210, 355
BstYI RGATCY 2 cut(s) 210, 355
BsuRI GGCC 2 cut(s) 89, 318
BtsCI GGATG 1 cut(s) 406
CaiI CAGNNNCTG 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 317
CseI GACGC 2 cut(s) 309, 377
Csp6I GTAC 1 cut(s) 44
CviAII CATG 1 cut(s) 116
CviJI RGCY 7 cut(s) 65, 89, 169, 262, 287, 318, 365
CviKI_1 RGCY 7 cut(s) 65, 89, 169, 262, 287, 318, 365
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 1 cut(s) 68
DpnI GATC 2 cut(s) 212, 357
DpnII GATC 2 cut(s) 210, 355
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
EciI GGCGGA 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 319
FaeI CATG 1 cut(s) 119
FaiI YATR 4 cut(s) 105, 113, 117, 347
FaqI GGGAC 2 cut(s) 46, 408
FatI CATG 1 cut(s) 115
Fnu4HI GCNGC 5 cut(s) 15, 54, 57, 270, 288
FokI GGATG 1 cut(s) 413
Fsp4HI GCNGC 5 cut(s) 15, 54, 57, 270, 288
FspBI CTAG 1 cut(s) 39
GluI GCNGC 5 cut(s) 15, 54, 57, 270, 288
HaeIII GGCC 2 cut(s) 89, 318
HapII CCGG 2 cut(s) 238, 366
HgaI GACGC 2 cut(s) 309, 377
Hin1I GRCGYC 1 cut(s) 388
Hin1II CATG 1 cut(s) 119
HinfI GANTC 2 cut(s) 128, 162
HpaII CCGG 2 cut(s) 238, 366
Hpy166II GTNNAC 2 cut(s) 44, 254
Hpy188III TCNNGA 2 cut(s) 70, 238
Hpy8I GTNNAC 2 cut(s) 44, 254
Hpy99I CGWCG 1 cut(s) 393
HpyAV CCTTC 2 cut(s) 116, 149
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4V TGCA 5 cut(s) 14, 56, 119, 254, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 68
Hsp92I GRCGYC 1 cut(s) 388
Hsp92II CATG 1 cut(s) 119
Kpn2I TCCGGA 1 cut(s) 237
Kzo9I GATC 2 cut(s) 210, 355
LguI GCTCTTC 1 cut(s) 176
LmnI GCTCC 1 cut(s) 274
Lsp1109I GCAGC 4 cut(s) 26, 40, 68, 274
LweI GCATC 1 cut(s) 136
MaeI CTAG 1 cut(s) 39
MalI GATC 2 cut(s) 212, 357
MboI GATC 2 cut(s) 210, 355
MboII GAAGA 3 cut(s) 163, 171, 220
MfeI CAATTG 1 cut(s) 198
MflI RGATCY 2 cut(s) 210, 355
MhlI GDGCHC 2 cut(s) 256, 379
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 1 cut(s) 198
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 2 cut(s) 238, 331
MnlI CCTC 5 cut(s) 236, 259, 290, 331, 410
Mox20I TGGCCA 1 cut(s) 89
MroI TCCGGA 1 cut(s) 237
MscI TGGCCA 1 cut(s) 89
MseI TTAA 1 cut(s) 179
Msp20I TGGCCA 1 cut(s) 89
MspI CCGG 2 cut(s) 238, 366
MspR9I CCNGG 1 cut(s) 321
MunI CAATTG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 2 cut(s) 210, 355
NlaIII CATG 1 cut(s) 119
NspI RCATGY 1 cut(s) 119
PciSI GCTCTTC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 162
PkrI GCNGC 5 cut(s) 16, 55, 58, 271, 289
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspPI GGNCC 1 cut(s) 317
PstI CTGCAG 1 cut(s) 58
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 2 cut(s) 210, 355
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SapI GCTCTTC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 5 cut(s) 15, 54, 57, 270, 288
Sau3AI GATC 2 cut(s) 210, 355
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 2 cut(s) 256, 379
SetI ASST 3 cut(s) 67, 171, 247
SfaNI GCATC 1 cut(s) 136
SfcI CTRYAG 1 cut(s) 54
SmlI CTYRAG 2 cut(s) 257, 378
SmoI CTYRAG 2 cut(s) 257, 378
SpeI ACTAGT 1 cut(s) 38
Sse9I AATT 1 cut(s) 198
SsiI CCGC 4 cut(s) 94, 269, 272, 341
SspMI CTAG 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 319
TaaI ACNGT 1 cut(s) 77
TasI AATT 1 cut(s) 198
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 1 cut(s) 162
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TseI GCWGC 4 cut(s) 14, 53, 56, 287
TspDTI ATGAA 1 cut(s) 423
VneI GTGCAC 1 cut(s) 252
XceI RCATGY 1 cut(s) 119
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.