Rh5CG219600

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0018258
Physical Location & Seq
Forward (+)
22335884 .. 22340094
4211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG219600.1

Sequence Viewer

Length: 873 bp
ATGGCGCTGCATCACGGCGCTGTTTTGGGTTGGGAAGCTGCAGCTGTGGCGGGGCTTACTGGTGGGAGTGGTGGAGGAGCAGAGGTGGCTGAGCTTGGTGGGGACAACAACGGAGGTGGAGATGGAGTTGCAAACCGGTTTCCCAGTTGGTTGCGCCAGACATCCACCTCGGCACTCCTCCCTAGAGCCTCCTCCTTGTCGCCGACACCGGCGGCAATCCCTGCTGCTCCGACTAATTGTTCTGTGCCTGCTTTTGATAATTTGAGCAAATTGACGCTAGCTCTTCATAGCGGCTGTTGTGGGTGGGGAATTCTAACGATGTTGTTGGAGAGAGAATCAAATCTAGAATGTCTTGTGTTGGAACATGACCATCATCATTATCCCGCCTATTGTGGTGGATCAGAGTCGGTGATTGAACTTGAAGATCCTATTGAAGTTCCCCCTGAAGTAGTTACATGGAGTCCACCAGAGTCTGTTCCTAAATGTGTGTCGTCACACCTCAAGAGTGTCTCCTTAAAGGGATTCCAGGGAAAGCATTTCTGGGGACATGTAGATGAAATGGAAGTGCTCAAGTATTTACTAGAGAATGGTCAAGTTTTGAAGGAGATGACTATTTACACTGAGTTTCTAGAACAGGAGTTGTACGGTGAACTTTCAAGGTTTGAATGGGGTTCAGAGACTTGTCAAGTTGAGATTATCAGCAAGGGATCTAAGGTTTTAGAAGCAGTTTGTTTGAAGGTCAAATTCCACGTTTTAAAAGGGTTTTGTTTTGTTACAAGTCTGTATAAGCATCAATTTCTTGATGACGCAATGGTAAAGATGACACTGCTACTTGTTTTGAAGTTGATGTTTTTGATGGATTCTGTTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

290

Amino Acids

31.47

Weight (kDa)

5.26

Isoelectric Point (pI)

33.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 156 - 205 5.1e-15 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 50, 212, 291, 384
AclWI GGATC 3 cut(s) 406, 419, 715
AcsI RAATTY 2 cut(s) 309, 743
AcuI CTGAAG 1 cut(s) 465
AfaI GTAC 1 cut(s) 644
AflIII ACRYGT 1 cut(s) 547
AgeI ACCGGT 1 cut(s) 135
AgsI TTSAA 8 cut(s) 416, 422, 434, 601, 657, 665, 736, 841
AjnI CCWGG 1 cut(s) 525
AluBI AGCT 5 cut(s) 38, 44, 94, 281, 870
AluI AGCT 5 cut(s) 38, 44, 94, 281, 870
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 2 cut(s) 514, 671
AlwI GGATC 3 cut(s) 406, 419, 715
AlwNI CAGNNNCTG 1 cut(s) 473
ApeKI GCWGC 4 cut(s) 7, 38, 41, 224
ApoI RAATTY 2 cut(s) 309, 743
AsiGI ACCGGT 1 cut(s) 135
AspLEI GCGC 3 cut(s) 7, 20, 156
AsuHPI GGTGA 2 cut(s) 421, 659
AsuNHI GCTAGC 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 570
BbvI GCAGC 3 cut(s) 25, 53, 211
BccI CCATC 3 cut(s) 116, 378, 850
BceAI ACGGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 527
BcoDI GTCTC 2 cut(s) 514, 671
BfaI CTAG 5 cut(s) 183, 278, 344, 581, 629
BfmI CTRYAG 1 cut(s) 39
BfoI RGCGCY 2 cut(s) 8, 21
BisI GCNGC 6 cut(s) 8, 39, 42, 213, 225, 292
BlpI GCTNAGC 1 cut(s) 90
BlsI GCNGC 6 cut(s) 9, 40, 43, 214, 226, 293
Bme1390I CCNGG 1 cut(s) 527
BmrFI CCNGG 1 cut(s) 527
BmrI ACTGGG 1 cut(s) 138
BmsI GCATC 2 cut(s) 19, 799
BmtI GCTAGC 1 cut(s) 281
BmuI ACTGGG 1 cut(s) 138
Bpu1102I GCTNAGC 1 cut(s) 90
BpuEI CTTGAG 2 cut(s) 485, 554
BsaJI CCNNGG 2 cut(s) 168, 526
BsaWI WCCGGW 1 cut(s) 135
BsaXI ACNNNNNCTCC 4 cut(s) 69, 99, 111, 141
Bse118I RCCGGY 2 cut(s) 135, 208
Bse1I ACTGG 2 cut(s) 64, 144
Bse3DI GCAATG 1 cut(s) 816
BseBI CCWGG 1 cut(s) 527
BseDI CCNNGG 2 cut(s) 168, 526
BseGI GGATG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 816
BseMII CTCAG 2 cut(s) 81, 612
BseNI ACTGG 2 cut(s) 64, 144
BseRI GAGGAG 3 cut(s) 90, 167, 181
BseXI GCAGC 3 cut(s) 25, 53, 211
BshTI ACCGGT 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 570
BsiSI CCGG 2 cut(s) 136, 209
BslFI GGGAC 2 cut(s) 116, 558
BsmAI GTCTC 2 cut(s) 514, 671
BsmFI GGGAC 2 cut(s) 116, 558
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 3 cut(s) 398, 424, 707
Bsp1720I GCTNAGC 1 cut(s) 90
BspACI CCGC 4 cut(s) 50, 212, 291, 384
BspCNI CTCAG 2 cut(s) 82, 613
BspMAI CTGCAG 1 cut(s) 43
BspOI GCTAGC 1 cut(s) 281
BspPI GGATC 3 cut(s) 406, 419, 715
BspQI GCTCTTC 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 816
BsrFI RCCGGY 2 cut(s) 135, 208
BsrI ACTGG 2 cut(s) 64, 144
BssAI RCCGGY 2 cut(s) 135, 208
BssECI CCNNGG 2 cut(s) 168, 526
BssMI GATC 3 cut(s) 398, 424, 707
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 1 cut(s) 647
Bst6I CTCTTC 1 cut(s) 288
BstAPI GCANNNNNTGC 1 cut(s) 221
BstC8I GCNNGC 2 cut(s) 249, 279
BstDEI CTNAG 3 cut(s) 90, 621, 711
BstF5I GGATG 1 cut(s) 161
BstH2I RGCGCY 2 cut(s) 8, 21
BstHHI GCGC 3 cut(s) 7, 20, 156
BstKTI GATC 3 cut(s) 401, 427, 710
BstMAI GTCTC 2 cut(s) 514, 671
BstMBI GATC 3 cut(s) 398, 424, 707
BstMWI GCNNNNNNNGC 3 cut(s) 47, 86, 221
BstNI CCWGG 1 cut(s) 527
BstNSI RCATGY 1 cut(s) 551
BstSCI CCNGG 1 cut(s) 525
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 3 cut(s) 25, 53, 211
BstX2I RGATCY 2 cut(s) 424, 707
BstYI RGATCY 2 cut(s) 424, 707
BtsCI GGATG 1 cut(s) 161
BtsI GCAGTG 1 cut(s) 824
BtsIMutI CAGTG 2 cut(s) 618, 824
Cac8I GCNNGC 2 cut(s) 249, 279
CaiI CAGNNNCTG 1 cut(s) 473
CfoI GCGC 3 cut(s) 7, 20, 156
Cfr10I RCCGGY 2 cut(s) 135, 208
CseI GACGC 2 cut(s) 283, 815
Csp6I GTAC 1 cut(s) 643
CspAI ACCGGT 1 cut(s) 135
CspCI CAANNNNNGTGG 2 cut(s) 97, 132
CviAII CATG 3 cut(s) 365, 456, 548
CviJI RGCY 9 cut(s) 38, 44, 55, 89, 94, 188, 281, 294, 870
CviKI_1 RGCY 9 cut(s) 38, 44, 55, 89, 94, 188, 281, 294, 870
CviQI GTAC 1 cut(s) 643
DdeI CTNAG 3 cut(s) 90, 621, 711
DpnI GATC 3 cut(s) 400, 426, 709
DpnII GATC 3 cut(s) 398, 424, 707
DraI TTTAAA 1 cut(s) 756
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 465
EcoRI GAATTC 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 525
FaeI CATG 3 cut(s) 368, 459, 551
FaiI YATR 5 cut(s) 288, 366, 457, 549, 786
FaqI GGGAC 2 cut(s) 116, 558
FatI CATG 3 cut(s) 364, 455, 547
FauI CCCGC 2 cut(s) 43, 391
Fnu4HI GCNGC 6 cut(s) 8, 39, 42, 213, 225, 292
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 6 cut(s) 8, 39, 42, 213, 225, 292
FspBI CTAG 5 cut(s) 183, 278, 344, 581, 629
GlaI GCGC 3 cut(s) 6, 19, 155
GluI GCNGC 6 cut(s) 8, 39, 42, 213, 225, 292
HaeII RGCGCY 2 cut(s) 8, 21
HapII CCGG 2 cut(s) 136, 209
HgaI GACGC 2 cut(s) 283, 815
HhaI GCGC 3 cut(s) 7, 20, 156
Hin1II CATG 3 cut(s) 368, 459, 551
Hin6I GCGC 3 cut(s) 5, 18, 154
HinP1I GCGC 3 cut(s) 5, 18, 154
HinfI GANTC 6 cut(s) 335, 404, 460, 470, 522, 860
HpaII CCGG 2 cut(s) 136, 209
HphI GGTGA 2 cut(s) 421, 659
Hpy166II GTNNAC 2 cut(s) 464, 650
Hpy188I TCNGA 3 cut(s) 231, 403, 676
Hpy188III TCNNGA 4 cut(s) 344, 502, 629, 800
Hpy8I GTNNAC 2 cut(s) 464, 650
HpyAV CCTTC 2 cut(s) 595, 730
HpyCH4III ACNGT 1 cut(s) 647
HpyCH4IV ACGT 1 cut(s) 750
HpyCH4V TGCA 3 cut(s) 10, 41, 131
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 86, 221
HpyF3I CTNAG 3 cut(s) 90, 621, 711
HpySE526I ACGT 1 cut(s) 750
Hsp92II CATG 3 cut(s) 368, 459, 551
HspAI GCGC 3 cut(s) 5, 18, 154
Kzo9I GATC 3 cut(s) 398, 424, 707
LguI GCTCTTC 1 cut(s) 288
LmnI GCTCC 2 cut(s) 77, 232
Lsp1109I GCAGC 3 cut(s) 25, 53, 211
LweI GCATC 2 cut(s) 19, 799
MaeI CTAG 5 cut(s) 183, 278, 344, 581, 629
MaeII ACGT 1 cut(s) 750
MaeIII GTNAC 3 cut(s) 451, 492, 772
MalI GATC 3 cut(s) 400, 426, 709
MboI GATC 3 cut(s) 398, 424, 707
MboII GAAGA 2 cut(s) 275, 434
MflI RGATCY 2 cut(s) 424, 707
MhlI GDGCHC 1 cut(s) 570
MluCI AATT 6 cut(s) 235, 259, 269, 309, 743, 794
MlyI GAGTC 3 cut(s) 413, 469, 479
MmeI TCCRAC 3 cut(s) 254, 306, 339
MnlI CCTC 8 cut(s) 68, 76, 107, 178, 188, 199, 202, 509
MseI TTAA 2 cut(s) 515, 755
MslI CAYNNNNRTG 1 cut(s) 552
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 2 cut(s) 136, 209
MspR9I CCNGG 1 cut(s) 527
MvaI CCWGG 1 cut(s) 527
MwoI GCNNNNNNNGC 3 cut(s) 47, 86, 221
NdeII GATC 3 cut(s) 398, 424, 707
NheI GCTAGC 1 cut(s) 277
NlaIII CATG 3 cut(s) 368, 459, 551
NmeAIII GCCGAG 1 cut(s) 149
NmuCI GTSAC 1 cut(s) 492
NspI RCATGY 1 cut(s) 551
PciI ACATGT 1 cut(s) 547
PciSI GCTCTTC 1 cut(s) 288
PfeI GAWTC 3 cut(s) 335, 522, 860
PinAI ACCGGT 1 cut(s) 135
PkrI GCNGC 6 cut(s) 9, 40, 43, 214, 226, 293
PleI GAGTC 3 cut(s) 412, 468, 478
PpsI GAGTC 3 cut(s) 412, 468, 478
PscI ACATGT 1 cut(s) 547
Psp6I CCWGG 1 cut(s) 525
PspGI CCWGG 1 cut(s) 525
PstI CTGCAG 1 cut(s) 43
PstNI CAGNNNCTG 1 cut(s) 473
PsuI RGATCY 2 cut(s) 424, 707
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 1 cut(s) 644
RsaNI GTAC 1 cut(s) 643
RseI CAYNNNNRTG 1 cut(s) 552
SapI GCTCTTC 1 cut(s) 288
SaqAI TTAA 2 cut(s) 515, 755
SatI GCNGC 6 cut(s) 8, 39, 42, 213, 225, 292
Sau3AI GATC 3 cut(s) 398, 424, 707
SchI GAGTC 3 cut(s) 413, 469, 479
ScrFI CCNGG 1 cut(s) 527
SduI GDGCHC 1 cut(s) 570
SfaNI GCATC 2 cut(s) 19, 799
SfcI CTRYAG 1 cut(s) 39
SgrAI CRCCGGYG 1 cut(s) 208
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 2 cut(s) 500, 569
SmoI CTYRAG 2 cut(s) 500, 569
Sse9I AATT 6 cut(s) 235, 259, 269, 309, 743, 794
SsiI CCGC 4 cut(s) 50, 212, 291, 384
SspMI CTAG 5 cut(s) 183, 278, 344, 581, 629
StyD4I CCNGG 1 cut(s) 525
TaaI ACNGT 1 cut(s) 647
TaiI ACGT 1 cut(s) 753
TasI AATT 6 cut(s) 235, 259, 269, 309, 743, 794
TauI GCSGC 2 cut(s) 215, 294
TfiI GAWTC 3 cut(s) 335, 522, 860
Tru1I TTAA 2 cut(s) 515, 755
Tru9I TTAA 2 cut(s) 515, 755
TscAI CASTG 2 cut(s) 625, 831
TseFI GTSAC 1 cut(s) 492
TseI GCWGC 4 cut(s) 7, 38, 41, 224
Tsp45I GTSAC 1 cut(s) 492
TspDTI ATGAA 2 cut(s) 275, 570
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 2 cut(s) 625, 831
XapI RAATTY 2 cut(s) 309, 743
XbaI TCTAGA 2 cut(s) 343, 628
XceI RCATGY 1 cut(s) 551
XspI CTAG 5 cut(s) 183, 278, 344, 581, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.