Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006853.1

Orthogroup ID

OG0007894

Physical Location & Seq

Genomic Coordinates Reverse (-)

1048 .. 3964

Gene Structure 2917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006853.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

atggtccttgagttccttggtgatagcttacttcgtctgatcaagtacaaccggtataaaggtcttaagttgaataatgttagggagatctgcaaatgtatattgatgggtctggattatttgcatagagaacttggtataatccacaccgacttaaaaccagaaaatattcttctgtttaacaccattgatcccaccaaagatcccgtcaggtctaaattcaccccaattcttgaaaggcctgaaggaaacctgaatggtggggtcaccatgagccttattgagaaaaaactcaaaaggagggcaaggagagcagttgctaagatttccttgagaagggaatctatgggaggaggtgaagctcccaagtctgaaagaaacatggatggggttgatgtaaggtgcaaggttgtcgattttgggaatgcatgttgggctgacaagcagcttgcagaagagatacaaacgaggcagtatagagctcctgaggttattctccgatcgggttatacctactcagtggatatgtggtcattcgcttgcacagcctttgagcttgcgacaggtgacatgttgtttgctccgaagatgggacaaggctttagtgaggatgaggatcatcttgctttgatgatggaggtccttggaaagatgcctcgaaaggtagccattggaggagctcgttccaaggattatttcgacagacatggcgatctaaaaagaattcggaggctgaaattttggccacttcataaattattgatcgatagatacaacttttccgagactgatgctcgggagtttgcagagttcctctgtcccattttcgactttgcaccagagaagcggccaaccgctcagcagtgccttcaacatcccaccaccgaactggaatggcttgaaatcatggactcggtagttcagtcttcgctgcctccggcgtcagatctctcgccgttgttcctctcattcgtcaacaacaagctccgaattgatcaaaatctgagccaggcgactctcctctcagagctccaggcctattacggcaacttagatcaagccctagcttctccctcctctgtgacatttgcccaattgctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

367

Amino Acids

41.86

Weight (kDa)

8.07

Isoelectric Point (pI)

54.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17530 AT2G17530 AT2G17530 AT4G35500 AT4G35500
fragaria_vesca	FvH4_1g10250 FvH4_1g10250 FvH4_1g10250
malus_domestica	MD02G1114500.v1.1 MD15G1230200.v1.1
prunus_persica	Prupe.7G183700_v2.0.a1
pyrus_communis	pycom02g08940 pycom15g20530
rosa_chinensis	RchiOBHm_Chr2g0097071
rosa_laevigata	RLG00000016700
rosa_multiflora	Rmu_sc0006853.1_g000001 Rmu_sc0017953.1_g000004
rosa_roxburghii	Rroxscaffold_2G00145000
rosa_rugosa	Rorug02G0063400
rosa_samantha	Rh2AG111000 Rh2BG112900 Rh2CG115100 Rh2DG114300
rosa_wichuraiana	Rw2G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	857
AciI	CCGC	2 cut(s)	847, 855
AclWI	GGATC	3 cut(s)	185, 197, 624
AcoI	YGGCCR	2 cut(s)	743, 848
AcsI	RAATTY	3 cut(s)	218, 723, 737
AcuI	CTGAAG	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	941
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	336, 590
AflII	CTTAAG	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	570
AgeI	ACCGGT	1 cut(s)	51
AgsI	TTSAA	4 cut(s)	73, 236, 872, 902
AjnI	CCWGG	2 cut(s)	1008, 1032
AjuI	GAANNNNNNNTTGG	2 cut(s)	680, 712
AluBI	AGCT	9 cut(s)	27, 362, 448, 482, 556, 680, 985, 1030, 1067
AluI	AGCT	9 cut(s)	27, 362, 448, 482, 556, 680, 985, 1030, 1067
Alw21I	GWGCWC	3 cut(s)	484, 682, 1032
Alw26I	GTCTC	1 cut(s)	779
AlwI	GGATC	3 cut(s)	185, 197, 624
Ama87I	CYCGRG	1 cut(s)	795
AoxI	GGCC	4 cut(s)	239, 743, 848, 1035
ApeKI	GCWGC	2 cut(s)	445, 931
ApoI	RAATTY	3 cut(s)	218, 723, 737
ArsI	GACNNNNNNTTYG	4 cut(s)	192, 224, 560, 592
AsiGI	ACCGGT	1 cut(s)	51
Asp700I	GAANNNNTTC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	4, 640
AsuHPI	GGTGA	5 cut(s)	32, 214, 259, 368, 578
AvaI	CYCGRG	1 cut(s)	795
AvaII	GGWCC	2 cut(s)	4, 640
AxyI	CCTNAGG	1 cut(s)	486
BalI	TGGCCA	1 cut(s)	745
BanII	GRGCYC	3 cut(s)	484, 682, 1032
BbsI	GAAGAC	1 cut(s)	918
Bbv12I	GWGCWC	3 cut(s)	484, 682, 1032
BbvI	GCAGC	2 cut(s)	457, 918
BccI	CCATC	4 cut(s)	100, 380, 583, 628
BceAI	ACGGC	2 cut(s)	940, 1060
BcgI	CGANNNNNNTGC	4 cut(s)	394, 428, 773, 807
BciT130I	CCWGG	2 cut(s)	1010, 1034
BclI	TGATCA	2 cut(s)	39, 994
BcoDI	GTCTC	1 cut(s)	779
BfaI	CTAG	1 cut(s)	1064
BfrI	CTTAAG	1 cut(s)	65
BglII	AGATCT	2 cut(s)	87, 946
BisI	GCNGC	3 cut(s)	446, 848, 932
BlpI	GCTNAGC	1 cut(s)	858
BlsI	GCNGC	3 cut(s)	447, 849, 933
Bme1390I	CCNGG	2 cut(s)	1010, 1034
Bme18I	GGWCC	2 cut(s)	4, 640
BmeT110I	CYCGRG	1 cut(s)	795
BmgT120I	GGNCC	2 cut(s)	4, 640
BmrFI	CCNGG	2 cut(s)	1010, 1034
BmsI	GCATC	2 cut(s)	642, 781
BpiI	GAAGAC	1 cut(s)	918
BpmI	CTGGAG	1 cut(s)	1016
Bpu1102I	GCTNAGC	1 cut(s)	858
BpuEI	CTTGAG	2 cut(s)	29, 352
Bsa29I	ATCGAT	1 cut(s)	765
BsaBI	GATNNNNATC	2 cut(s)	615, 999
BsaHI	GRCGYC	1 cut(s)	941
BsaJI	CCNNGG	3 cut(s)	16, 643, 687
BsaWI	WCCGGW	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	2 cut(s)	336, 590
Bse118I	RCCGGY	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	894
Bse21I	CCTNAGG	1 cut(s)	486
Bse8I	GATNNNNATC	2 cut(s)	615, 999
BseBI	CCWGG	2 cut(s)	1010, 1034
BseCI	ATCGAT	1 cut(s)	765
BseDI	CCNNGG	3 cut(s)	16, 643, 687
BseGI	GGATG	3 cut(s)	391, 616, 874
BseJI	GATNNNNATC	2 cut(s)	615, 999
BseLI	CCNNNNNNNGG	2 cut(s)	336, 590
BseMII	CTCAG	5 cut(s)	477, 531, 872, 995, 1038
BseNI	ACTGG	1 cut(s)	894
BseRI	GAGGAG	4 cut(s)	366, 690, 1010, 1066
BseXI	GCAGC	2 cut(s)	457, 918
Bsh1285I	CGRYCG	1 cut(s)	503
BshFI	GGCC	4 cut(s)	241, 745, 850, 1037
BshTI	ACCGGT	1 cut(s)	51
BshVI	ATCGAT	1 cut(s)	765
BsiEI	CGRYCG	1 cut(s)	503
BsiHKAI	GWGCWC	3 cut(s)	484, 682, 1032
BsiHKCI	CYCGRG	1 cut(s)	795
BsiSI	CCGG	2 cut(s)	52, 938
BslFI	GGGAC	2 cut(s)	606, 804
BslI	CCNNNNNNNGG	2 cut(s)	336, 590
BsmAI	GTCTC	1 cut(s)	779
BsmFI	GGGAC	2 cut(s)	606, 804
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	4 cut(s)	241, 745, 850, 1037
BsoBI	CYCGRG	1 cut(s)	795
Bsp1286I	GDGCHC	3 cut(s)	484, 682, 1032
Bsp1720I	GCTNAGC	1 cut(s)	858
BspACI	CCGC	2 cut(s)	847, 855
BspANI	GGCC	4 cut(s)	241, 745, 850, 1037
BspCNI	CTCAG	5 cut(s)	478, 530, 871, 996, 1037
BspDI	ATCGAT	1 cut(s)	765
BspPI	GGATC	3 cut(s)	185, 197, 624
BspTI	CTTAAG	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	857
BsrFI	RCCGGY	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	894
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	3 cut(s)	16, 643, 687
BssNI	GRCGYC	1 cut(s)	941
BssT1I	CCWWGG	3 cut(s)	16, 643, 687
Bst2UI	CCWGG	2 cut(s)	1010, 1034
Bst6I	CTCTTC	1 cut(s)	450
BstACI	GRCGYC	1 cut(s)	941
BstAFI	CTTAAG	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	450, 541, 558
BstDEI	CTNAG	7 cut(s)	321, 486, 517, 858, 1004, 1024, 1051
BstEII	GGTNACC	1 cut(s)	265
BstENI	CCTNNNNNAGG	1 cut(s)	334
BstF5I	GGATG	3 cut(s)	391, 616, 874
BstMAI	GTCTC	1 cut(s)	779
BstMCI	CGRYCG	1 cut(s)	503
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 434, 545
BstNI	CCWGG	2 cut(s)	1010, 1034
BstNSI	RCATGY	2 cut(s)	432, 574
BstPI	GGTNACC	1 cut(s)	265
BstSCI	CCNGG	2 cut(s)	1008, 1032
BstV1I	GCAGC	2 cut(s)	457, 918
BstV2I	GAAGAC	1 cut(s)	918
BstX2I	RGATCY	3 cut(s)	87, 202, 946
BstXI	CCANNNNNNTGG	1 cut(s)	889
BstYI	RGATCY	3 cut(s)	87, 202, 946
Bsu15I	ATCGAT	1 cut(s)	765
Bsu36I	CCTNAGG	1 cut(s)	486
BsuRI	GGCC	4 cut(s)	241, 745, 850, 1037
BsuTUI	ATCGAT	1 cut(s)	765
BtsCI	GGATG	3 cut(s)	391, 616, 874
BtsI	GCAGTG	1 cut(s)	869
BtsIMutI	CAGTG	2 cut(s)	525, 869
Cac8I	GCNNGC	3 cut(s)	450, 541, 558
Cfr10I	RCCGGY	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	4, 640
ClaI	ATCGAT	1 cut(s)	765
CseI	GACGC	1 cut(s)	930
Csp6I	GTAC	1 cut(s)	46
CspAI	ACCGGT	1 cut(s)	51
CviAII	CATG	6 cut(s)	271, 382, 429, 571, 707, 907
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	7 cut(s)	321, 486, 517, 858, 1004, 1024, 1051
EaeI	YGGCCR	2 cut(s)	743, 848
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Ecl136II	GAGCTC	3 cut(s)	482, 680, 1030
Eco130I	CCWWGG	3 cut(s)	16, 643, 687
Eco147I	AGGCCT	2 cut(s)	241, 1037
Eco24I	GRGCYC	3 cut(s)	484, 682, 1032
Eco47I	GGWCC	2 cut(s)	4, 640
Eco53kI	GAGCTC	3 cut(s)	482, 680, 1030
Eco57I	CTGAAG	1 cut(s)	264
Eco81I	CCTNAGG	1 cut(s)	486
Eco88I	CYCGRG	1 cut(s)	795
Eco91I	GGTNACC	1 cut(s)	265
EcoICRI	GAGCTC	3 cut(s)	482, 680, 1030
EcoNI	CCTNNNNNAGG	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	640
EcoO65I	GGTNACC	1 cut(s)	265
EcoRI	GAATTC	1 cut(s)	723
EcoRII	CCWGG	2 cut(s)	1008, 1032
EcoT14I	CCWWGG	3 cut(s)	16, 643, 687
EcoT22I	ATGCAT	1 cut(s)	430
EcoT38I	GRGCYC	3 cut(s)	484, 682, 1032
ErhI	CCWWGG	3 cut(s)	16, 643, 687
FaeI	CATG	6 cut(s)	274, 385, 432, 574, 710, 910
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FaqI	GGGAC	2 cut(s)	606, 804
FatI	CATG	6 cut(s)	270, 381, 428, 570, 706, 906
FbaI	TGATCA	2 cut(s)	39, 994
Fnu4HI	GCNGC	3 cut(s)	446, 848, 932
FokI	GGATG	3 cut(s)	398, 623, 861
FriOI	GRGCYC	3 cut(s)	484, 682, 1032
Fsp4HI	GCNGC	3 cut(s)	446, 848, 932
FspBI	CTAG	1 cut(s)	1064
GluI	GCNGC	3 cut(s)	446, 848, 932
GsuI	CTGGAG	1 cut(s)	1016
HaeIII	GGCC	4 cut(s)	241, 745, 850, 1037
HapII	CCGG	2 cut(s)	52, 938
HgaI	GACGC	1 cut(s)	930
Hin1I	GRCGYC	1 cut(s)	941
Hin1II	CATG	6 cut(s)	274, 385, 432, 574, 710, 910
HincII	GTYRAC	1 cut(s)	976
HindII	GTYRAC	1 cut(s)	976
HinfI	GANTC	3 cut(s)	341, 911, 1015
HpaII	CCGG	2 cut(s)	52, 938
HphI	GGTGA	5 cut(s)	32, 214, 259, 368, 578
Hpy166II	GTNNAC	1 cut(s)	976
Hpy188III	TCNNGA	4 cut(s)	113, 233, 485, 797
Hpy8I	GTNNAC	1 cut(s)	976
HpyAV	CCTTC	3 cut(s)	239, 330, 878
HpyCH4V	TGCA	8 cut(s)	93, 124, 405, 428, 452, 543, 806, 836
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 434, 545
HpyF3I	CTNAG	7 cut(s)	321, 486, 517, 858, 1004, 1024, 1051
Hsp92I	GRCGYC	1 cut(s)	941
Hsp92II	CATG	6 cut(s)	274, 385, 432, 574, 710, 910
Ksp22I	TGATCA	2 cut(s)	39, 994
LmnI	GCTCC	6 cut(s)	367, 487, 586, 677, 990, 1035
Lsp1109I	GCAGC	2 cut(s)	457, 918
LweI	GCATC	2 cut(s)	642, 781
MaeI	CTAG	1 cut(s)	1064
MaeIII	GTNAC	3 cut(s)	265, 566, 1081
MbiI	CCGCTC	1 cut(s)	857
MboII	GAAGA	4 cut(s)	164, 467, 598, 918
MfeI	CAATTG	1 cut(s)	1094
MflI	RGATCY	3 cut(s)	87, 202, 946
MhlI	GDGCHC	3 cut(s)	484, 682, 1032
MlsI	TGGCCA	1 cut(s)	745
MluCI	AATT	7 cut(s)	218, 228, 723, 737, 755, 990, 1094
MluNI	TGGCCA	1 cut(s)	745
MlyI	GAGTC	2 cut(s)	905, 1009
Mox20I	TGGCCA	1 cut(s)	745
Mph1103I	ATGCAT	1 cut(s)	430
MroXI	GAANNNNTTC	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	745
MseI	TTAA	3 cut(s)	66, 155, 180
Msp20I	TGGCCA	1 cut(s)	745
MspCI	CTTAAG	1 cut(s)	65
MspI	CCGG	2 cut(s)	52, 938
MspR9I	CCNGG	2 cut(s)	1010, 1034
MunI	CAATTG	1 cut(s)	1094
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	2 cut(s)	1010, 1034
MwoI	GCNNNNNNNGC	3 cut(s)	311, 434, 545
NlaIII	CATG	6 cut(s)	274, 385, 432, 574, 710, 910
NmuCI	GTSAC	3 cut(s)	265, 566, 1081
NsiI	ATGCAT	1 cut(s)	430
NspI	RCATGY	2 cut(s)	432, 574
PceI	AGGCCT	2 cut(s)	241, 1037
PciI	ACATGT	1 cut(s)	570
PctI	GAATGC	1 cut(s)	430
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	341
PinAI	ACCGGT	1 cut(s)	51
PkrI	GCNGC	3 cut(s)	447, 849, 933
Ple19I	CGATCG	1 cut(s)	503
PleI	GAGTC	2 cut(s)	905, 1009
PpsI	GAGTC	2 cut(s)	905, 1009
PpuMI	RGGWCCY	1 cut(s)	640
PscI	ACATGT	1 cut(s)	570
Psp124BI	GAGCTC	3 cut(s)	484, 682, 1032
Psp5II	RGGWCCY	1 cut(s)	640
Psp6I	CCWGG	2 cut(s)	1008, 1032
PspEI	GGTNACC	1 cut(s)	265
PspGI	CCWGG	2 cut(s)	1008, 1032
PspPI	GGNCC	2 cut(s)	4, 640
PspPPI	RGGWCCY	1 cut(s)	640
PsuI	RGATCY	3 cut(s)	87, 202, 946
PvuI	CGATCG	1 cut(s)	503
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SacI	GAGCTC	3 cut(s)	484, 682, 1032
SaqAI	TTAA	3 cut(s)	66, 155, 180
SatI	GCNGC	3 cut(s)	446, 848, 932
Sau96I	GGNCC	2 cut(s)	4, 640
SchI	GAGTC	2 cut(s)	905, 1009
ScrFI	CCNGG	2 cut(s)	1010, 1034
SduI	GDGCHC	3 cut(s)	484, 682, 1032
SfaNI	GCATC	2 cut(s)	642, 781
SinI	GGWCC	2 cut(s)	4, 640
SmlI	CTYRAG	3 cut(s)	8, 65, 331
SmoI	CTYRAG	3 cut(s)	8, 65, 331
Sse9I	AATT	7 cut(s)	218, 228, 723, 737, 755, 990, 1094
SseBI	AGGCCT	2 cut(s)	241, 1037
SsiI	CCGC	2 cut(s)	847, 855
SspI	AATATT	1 cut(s)	169
SspMI	CTAG	1 cut(s)	1064
SstI	GAGCTC	3 cut(s)	484, 682, 1032
StuI	AGGCCT	2 cut(s)	241, 1037
StyD4I	CCNGG	2 cut(s)	1008, 1032
StyI	CCWWGG	3 cut(s)	16, 643, 687
TaqI	TCGA	5 cut(s)	414, 658, 699, 765, 828
TasI	AATT	7 cut(s)	218, 228, 723, 737, 755, 990, 1094
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	1 cut(s)	850
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	3 cut(s)	66, 155, 180
Tru9I	TTAA	3 cut(s)	66, 155, 180
TscAI	CASTG	2 cut(s)	525, 869
TseFI	GTSAC	3 cut(s)	265, 566, 1081
TseI	GCWGC	2 cut(s)	445, 931
Tsp45I	GTSAC	3 cut(s)	265, 566, 1081
TspDTI	ATGAA	1 cut(s)	740
TspRI	CASTG	2 cut(s)	525, 869
Vha464I	CTTAAG	1 cut(s)	65
VpaK11BI	GGWCC	2 cut(s)	4, 640
XagI	CCTNNNNNAGG	1 cut(s)	334
XapI	RAATTY	3 cut(s)	218, 723, 737
XceI	RCATGY	2 cut(s)	432, 574
XcmI	CCANNNNNNNNNTGG	1 cut(s)	886
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	1 cut(s)	1064
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.