Rorug02G0063400
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007894
Physical Location & Seq
Reverse (-)
4982038 .. 4982904
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0063400.1

Sequence Viewer

Length: 714 bp
ATGTTCCCGATTAGTTTTAGTACTACTCCATGGGTACTTTATAGCCTATCTGAAGGAAAAATTTACGACAACATTAACATAAGATGTACAATGCCTGGTTTTGGTAGTCTCATGGCTAACAGATGCAATGGCTGTGGCCAGGGTTGGTTGGCCACAGTAGATGATCAGCTGGCTGGACTTCCTGTTCTAAAGCTCATAAACCCTTTCAGAAAAGAAATCATTCCTTTGAATCGCATCGGATGTCCCCTCGTCATGAGCTCTAAGCCAAATGAGTTCCCAAAGCTGATCTTGTATGGTGATCCCACACTAGAAGGGGACAACATGCAGCTTTATGGTTGTAGCATTATACAATCAAGCTGCAGTTCTGGTATGTCACGAAGGCCAAAGATACACAATACTAGTGGTATGTGCCCGAGTTCTCAATCATGTCTTGTGGAATCAACTAAAGGAGAGCTTTTGCACGTTCGAAGATTTTTAACACTACGGATAGAAAGGAATCAAGGGGCAATGCCTTTCACTCACACCTTCAAGGTTTACAAGTTGGTGTTCGATGACACCGGATCCATTGTGAAGCAGGTCGAGTTAAAAACCATTGGAGATGAGACTCTGTTTGTTGGTGACAGTCGATCAATGTCTGTTTTGGCCTCGAGTTTTTCTTGGTGCAAACCGAACTCCATGTATATATTATACAAGCGATTCGTTGACTGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

237

Amino Acids

26.44

Weight (kDa)

8.79

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 129 - 229 3.5e-14 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 565
AclWI GGATC 3 cut(s) 293, 555, 568
AcoI YGGCCR 2 cut(s) 136, 150
AcsI RAATTY 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 72
AfaI GTAC 3 cut(s) 22, 36, 88
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 2 cut(s) 229, 529
AhlI ACTAGT 1 cut(s) 398
AjnI CCWGG 2 cut(s) 94, 138
AloI GAACNNNNNNTCC 2 cut(s) 168, 200
AluBI AGCT 7 cut(s) 169, 193, 258, 283, 328, 357, 454
AluI AGCT 7 cut(s) 169, 193, 258, 283, 328, 357, 454
Alw21I GWGCWC 1 cut(s) 260
Alw26I GTCTC 2 cut(s) 113, 596
AlwI GGATC 3 cut(s) 293, 555, 568
Ama87I CYCGRG 2 cut(s) 412, 646
AoxI GGCC 4 cut(s) 136, 150, 380, 642
ApeKI GCWGC 2 cut(s) 325, 357
ApoI RAATTY 1 cut(s) 60
Asp700I GAANNNNTTC 1 cut(s) 219
AsuHPI GGTGA 2 cut(s) 308, 629
AsuII TTCGAA 1 cut(s) 466
AvaI CYCGRG 2 cut(s) 412, 646
BaeGI GKGCMC 1 cut(s) 413
BalI TGGCCA 2 cut(s) 138, 152
BamHI GGATCC 1 cut(s) 560
BanII GRGCYC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 260
BbvI GCAGC 2 cut(s) 337, 344
BciT130I CCWGG 2 cut(s) 96, 140
BclI TGATCA 1 cut(s) 163
BcoDI GTCTC 2 cut(s) 113, 596
BcuI ACTAGT 1 cut(s) 398
BfaI CTAG 2 cut(s) 308, 399
BfmI CTRYAG 1 cut(s) 358
BfuAI ACCTGC 1 cut(s) 565
BisI GCNGC 2 cut(s) 326, 358
BlsI GCNGC 2 cut(s) 327, 359
BmcAI AGTACT 1 cut(s) 22
Bme1390I CCNGG 2 cut(s) 96, 140
BmeT110I CYCGRG 2 cut(s) 412, 646
BmiI GGNNCC 1 cut(s) 562
BmrFI CCNGG 2 cut(s) 96, 140
BmsI GCATC 2 cut(s) 113, 243
Bpu14I TTCGAA 1 cut(s) 466
BsaJI CCNNGG 2 cut(s) 29, 139
BsaWI WCCGGW 1 cut(s) 557
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse3DI GCAATG 2 cut(s) 133, 513
BseBI CCWGG 2 cut(s) 96, 140
BseDI CCNNGG 2 cut(s) 29, 139
BseGI GGATG 1 cut(s) 245
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMI GCAATG 2 cut(s) 133, 513
BseSI GKGCMC 1 cut(s) 413
BseXI GCAGC 2 cut(s) 337, 344
BshFI GGCC 4 cut(s) 138, 152, 382, 644
BsiHKAI GWGCWC 1 cut(s) 260
BsiHKCI CYCGRG 2 cut(s) 412, 646
BsiSI CCGG 1 cut(s) 558
BslFI GGGAC 2 cut(s) 228, 329
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 2 cut(s) 113, 596
BsmFI GGGAC 2 cut(s) 228, 329
BsnI GGCC 4 cut(s) 138, 152, 382, 644
BsoBI CYCGRG 2 cut(s) 412, 646
Bsp119I TTCGAA 1 cut(s) 466
Bsp1286I GDGCHC 2 cut(s) 260, 413
Bsp1407I TGTACA 1 cut(s) 86
Bsp143I GATC 5 cut(s) 163, 285, 298, 560, 626
Bsp19I CCATGG 1 cut(s) 29
BspANI GGCC 4 cut(s) 138, 152, 382, 644
BspHI TCATGA 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 562
BspMAI CTGCAG 1 cut(s) 362
BspMI ACCTGC 1 cut(s) 565
BspPI GGATC 3 cut(s) 293, 555, 568
BspT104I TTCGAA 1 cut(s) 466
BsrDI GCAATG 2 cut(s) 133, 513
BsrGI TGTACA 1 cut(s) 86
BssECI CCNNGG 2 cut(s) 29, 139
BssMI GATC 5 cut(s) 163, 285, 298, 560, 626
BssT1I CCWWGG 1 cut(s) 29
Bst2UI CCWGG 2 cut(s) 96, 140
Bst4CI ACNGT 3 cut(s) 157, 623, 707
BstAUI TGTACA 1 cut(s) 86
BstBI TTCGAA 1 cut(s) 466
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 261
BstDSI CCRYGG 1 cut(s) 29
BstF5I GGATG 1 cut(s) 245
BstKTI GATC 5 cut(s) 166, 288, 301, 563, 629
BstMAI GTCTC 2 cut(s) 113, 596
BstMBI GATC 5 cut(s) 163, 285, 298, 560, 626
BstNI CCWGG 2 cut(s) 96, 140
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 2 cut(s) 94, 138
BstSFI CTRYAG 1 cut(s) 358
BstSLI GKGCMC 1 cut(s) 413
BstV1I GCAGC 2 cut(s) 337, 344
BstX2I RGATCY 1 cut(s) 560
BstYI RGATCY 1 cut(s) 560
BsuRI GGCC 4 cut(s) 138, 152, 382, 644
BtgI CCRYGG 1 cut(s) 29
BtsCI GGATG 1 cut(s) 245
BveI ACCTGC 1 cut(s) 565
Cac8I GCNNGC 1 cut(s) 171
CciI TCATGA 1 cut(s) 252
Csp6I GTAC 3 cut(s) 21, 35, 87
CspCI CAANNNNNGTGG 4 cut(s) 115, 150, 382, 417
CviAII CATG 6 cut(s) 30, 112, 253, 322, 426, 676
CviQI GTAC 3 cut(s) 21, 35, 87
DdeI CTNAG 1 cut(s) 261
DpnI GATC 5 cut(s) 165, 287, 300, 562, 628
DpnII GATC 5 cut(s) 163, 285, 298, 560, 626
EaeI YGGCCR 2 cut(s) 136, 150
Ecl136II GAGCTC 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 260
Eco53kI GAGCTC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 72
Eco88I CYCGRG 2 cut(s) 412, 646
EcoICRI GAGCTC 1 cut(s) 258
EcoRII CCWGG 2 cut(s) 94, 138
EcoT14I CCWWGG 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 6 cut(s) 33, 115, 256, 325, 429, 679
FalI AAGNNNNNCTT 4 cut(s) 272, 304, 438, 470
FaqI GGGAC 2 cut(s) 228, 329
FatI CATG 6 cut(s) 29, 111, 252, 321, 425, 675
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 2 cut(s) 326, 358
FokI GGATG 1 cut(s) 252
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 2 cut(s) 326, 358
FspBI CTAG 2 cut(s) 308, 399
GluI GCNGC 2 cut(s) 326, 358
HaeIII GGCC 4 cut(s) 138, 152, 382, 644
HapII CCGG 1 cut(s) 558
Hin1II CATG 6 cut(s) 33, 115, 256, 325, 429, 679
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HinfI GANTC 5 cut(s) 229, 437, 496, 604, 696
HpaII CCGG 1 cut(s) 558
HphI GGTGA 2 cut(s) 308, 629
Hpy166II GTNNAC 2 cut(s) 535, 703
Hpy188I TCNGA 3 cut(s) 52, 209, 239
Hpy188III TCNNGA 3 cut(s) 7, 253, 375
Hpy8I GTNNAC 2 cut(s) 535, 703
HpyAV CCTTC 4 cut(s) 47, 305, 372, 535
HpyCH4III ACNGT 3 cut(s) 157, 623, 707
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 5 cut(s) 126, 325, 360, 460, 663
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 6 cut(s) 33, 115, 256, 325, 429, 679
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 5 cut(s) 163, 285, 298, 560, 626
Lsp1109I GCAGC 2 cut(s) 337, 344
LweI GCATC 2 cut(s) 113, 243
MaeI CTAG 2 cut(s) 308, 399
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 2 cut(s) 372, 617
MalI GATC 5 cut(s) 165, 287, 300, 562, 628
MboI GATC 5 cut(s) 163, 285, 298, 560, 626
MboII GAAGA 1 cut(s) 480
MflI RGATCY 1 cut(s) 560
MhlI GDGCHC 2 cut(s) 260, 413
MlsI TGGCCA 2 cut(s) 138, 152
MluCI AATT 1 cut(s) 60
MluNI TGGCCA 2 cut(s) 138, 152
MlyI GAGTC 1 cut(s) 598
MnlI CCTC 2 cut(s) 257, 655
Mox20I TGGCCA 2 cut(s) 138, 152
MroXI GAANNNNTTC 1 cut(s) 219
MscI TGGCCA 2 cut(s) 138, 152
MseI TTAA 3 cut(s) 75, 476, 584
Msp20I TGGCCA 2 cut(s) 138, 152
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 1 cut(s) 558
MspR9I CCNGG 2 cut(s) 96, 140
MvaI CCWGG 2 cut(s) 96, 140
NcoI CCATGG 1 cut(s) 29
NdeII GATC 5 cut(s) 163, 285, 298, 560, 626
NlaIII CATG 6 cut(s) 33, 115, 256, 325, 429, 679
NlaIV GGNNCC 1 cut(s) 562
NmuCI GTSAC 2 cut(s) 372, 617
NspI RCATGY 1 cut(s) 325
NspV TTCGAA 1 cut(s) 466
PaeR7I CTCGAG 1 cut(s) 646
PagI TCATGA 1 cut(s) 252
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 4 cut(s) 229, 437, 496, 696
PkrI GCNGC 2 cut(s) 327, 359
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
Psp124BI GAGCTC 1 cut(s) 260
Psp6I CCWGG 2 cut(s) 94, 138
PspGI CCWGG 2 cut(s) 94, 138
PspN4I GGNNCC 1 cut(s) 562
PspXI VCTCGAGB 1 cut(s) 646
PstI CTGCAG 1 cut(s) 362
PsuI RGATCY 1 cut(s) 560
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 3 cut(s) 22, 36, 88
RsaNI GTAC 3 cut(s) 21, 35, 87
SacI GAGCTC 1 cut(s) 260
SaqAI TTAA 3 cut(s) 75, 476, 584
SatI GCNGC 2 cut(s) 326, 358
Sau3AI GATC 5 cut(s) 163, 285, 298, 560, 626
ScaI AGTACT 1 cut(s) 22
SchI GAGTC 1 cut(s) 598
ScrFI CCNGG 2 cut(s) 96, 140
SduI GDGCHC 2 cut(s) 260, 413
SfaNI GCATC 2 cut(s) 113, 243
SfcI CTRYAG 1 cut(s) 358
Sfr274I CTCGAG 1 cut(s) 646
SfuI TTCGAA 1 cut(s) 466
SlaI CTCGAG 1 cut(s) 646
SmlI CTYRAG 1 cut(s) 646
SmoI CTYRAG 1 cut(s) 646
SpeI ACTAGT 1 cut(s) 398
Sse9I AATT 1 cut(s) 60
SspMI CTAG 2 cut(s) 308, 399
SstI GAGCTC 1 cut(s) 260
StyD4I CCNGG 2 cut(s) 94, 138
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 3 cut(s) 157, 623, 707
TaiI ACGT 1 cut(s) 465
TaqI TCGA 5 cut(s) 466, 549, 579, 625, 647
TasI AATT 1 cut(s) 60
TatI WGTACW 2 cut(s) 20, 86
TfiI GAWTC 4 cut(s) 229, 437, 496, 696
Tru1I TTAA 3 cut(s) 75, 476, 584
Tru9I TTAA 3 cut(s) 75, 476, 584
TseFI GTSAC 2 cut(s) 372, 617
TseI GCWGC 2 cut(s) 325, 357
Tsp45I GTSAC 2 cut(s) 372, 617
TspGWI ACGGA 1 cut(s) 499
XapI RAATTY 1 cut(s) 60
XceI RCATGY 1 cut(s) 325
XhoI CTCGAG 1 cut(s) 646
XmnI GAANNNNTTC 1 cut(s) 219
XspI CTAG 2 cut(s) 308, 399
ZrmI AGTACT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.