Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007894

Physical Location & Seq

Genomic Coordinates Forward (+)

9444474 .. 9447992

Gene Structure 3519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG114300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGTCCTTGAGTTCCTTGGTGATAGCTTACTTCGGCTGATCAAGTACAACCGGTATAAAGGTCTTAAGTTGAATAATGTTAGGGAGATCTGCAAATGTATATTGATGGGTCTGGATTATTTGCATCGAGAACTTGGTATAATCCACACTGACTTAAAACCAGAAAATATTCTTCTCTTTAACACCATTGATCCCACCAAAGATCCTGTCAGGTCTAAATTCACCCCAATTCTTGAAAGGCCTGAAGGAAACCTGAATGGTGGGGTCACCATGAGCCTTATTGAGAAAAAACTCAAAAGGAGGGCAAGGAGAGCAGTTGCTAAGATTTCCTTGAGAAGGGAATCTATGGGAGGAGGTGAAGCTCCCAAGTCTGAAAGAAACATGGATGGGGTTGATGTAAGGTGCAAGGTTGTCGATTTTGGGAATGCATGTTGGGCTGACAAGCAGCTTGCAGAAGAGATACAAACGAGGCAGTATAGAGCTCCTGAGGTTATTCTCCGATCGGGTTATACCTACTCAGTGGATATGTGGTCATTCGCTTGCACAGCCTTTGAGCTTGCGACAGGTGACATGTTGTTTGCTCCAAAGATGGGACAAGGCTTTAGTGAGGATGAGGATCATCTTGCTTTGATGATGGAGGTCCTTGGAAAGATGCCTCGAAAGGTAGCCATTGGAGGAGCTCGTTCCAAGGATTATTTCGACAGACATGGCGATCTAAAAAGAATTCGGAGGCTGAAATTTTGGCCACTTCATAAATTATTGATCGATAGATACAACTTTTCCGAGACTGATGCTCGGGAGTTTGCAGAGTTCCTCTGTCCCATTTTCGACTTTGCACCAGAGAAGCGGCCAACCGCTCAGCAGTGCCTTCAACATCCGTGGCTCAATTGCATTACTACGACTCAGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

303

Amino Acids

34.85

Weight (kDa)

9.02

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 60	1.9e-10	Protein kinase domain
Pkinase	PF00069	134 - 295	6e-21	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17530 AT2G17530 AT2G17530 AT4G35500 AT4G35500
fragaria_vesca	FvH4_1g10250 FvH4_1g10250 FvH4_1g10250
malus_domestica	MD02G1114500.v1.1 MD15G1230200.v1.1
prunus_persica	Prupe.7G183700_v2.0.a1
pyrus_communis	pycom02g08940 pycom15g20530
rosa_chinensis	RchiOBHm_Chr2g0097071
rosa_laevigata	RLG00000016700
rosa_multiflora	Rmu_sc0006853.1_g000001 Rmu_sc0017953.1_g000004
rosa_roxburghii	Rroxscaffold_2G00145000
rosa_rugosa	Rorug02G0063400
rosa_samantha	Rh2AG111000 Rh2BG112900 Rh2CG115100 Rh2DG114300
rosa_wichuraiana	Rw2G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	857
AciI	CCGC	2 cut(s)	847, 855
AclWI	GGATC	3 cut(s)	185, 197, 624
AcoI	YGGCCR	2 cut(s)	743, 848
AcsI	RAATTY	3 cut(s)	218, 723, 737
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	336, 590
AflII	CTTAAG	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	570
AgeI	ACCGGT	1 cut(s)	51
AgsI	TTSAA	3 cut(s)	73, 236, 872
AjuI	GAANNNNNNNTTGG	2 cut(s)	680, 712
AluBI	AGCT	6 cut(s)	27, 362, 448, 482, 556, 680
AluI	AGCT	6 cut(s)	27, 362, 448, 482, 556, 680
Alw21I	GWGCWC	2 cut(s)	484, 682
Alw26I	GTCTC	1 cut(s)	779
AlwI	GGATC	3 cut(s)	185, 197, 624
Ama87I	CYCGRG	1 cut(s)	795
AoxI	GGCC	3 cut(s)	239, 743, 848
ApeKI	GCWGC	1 cut(s)	445
ApoI	RAATTY	3 cut(s)	218, 723, 737
ArsI	GACNNNNNNTTYG	4 cut(s)	192, 224, 560, 592
AsiGI	ACCGGT	1 cut(s)	51
Asp700I	GAANNNNTTC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	4, 640
AsuHPI	GGTGA	5 cut(s)	32, 214, 259, 368, 578
AvaI	CYCGRG	1 cut(s)	795
AvaII	GGWCC	2 cut(s)	4, 640
AxyI	CCTNAGG	1 cut(s)	486
BalI	TGGCCA	1 cut(s)	745
BanII	GRGCYC	2 cut(s)	484, 682
Bbv12I	GWGCWC	2 cut(s)	484, 682
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	4 cut(s)	100, 380, 583, 628
BcgI	CGANNNNNNTGC	4 cut(s)	394, 428, 773, 807
BclI	TGATCA	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	779
BfaI	CTAG	1 cut(s)	910
BfrI	CTTAAG	1 cut(s)	65
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	2 cut(s)	446, 848
BlpI	GCTNAGC	1 cut(s)	858
BlsI	GCNGC	2 cut(s)	447, 849
Bme18I	GGWCC	2 cut(s)	4, 640
BmeT110I	CYCGRG	1 cut(s)	795
BmgT120I	GGNCC	2 cut(s)	4, 640
BmsI	GCATC	3 cut(s)	133, 642, 781
Bpu1102I	GCTNAGC	1 cut(s)	858
BpuEI	CTTGAG	2 cut(s)	29, 352
Bsa29I	ATCGAT	1 cut(s)	765
BsaBI	GATNNNNATC	1 cut(s)	615
BsaJI	CCNNGG	4 cut(s)	16, 643, 687, 878
BsaWI	WCCGGW	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	2 cut(s)	336, 590
Bse118I	RCCGGY	1 cut(s)	51
Bse21I	CCTNAGG	1 cut(s)	486
Bse8I	GATNNNNATC	1 cut(s)	615
BseCI	ATCGAT	1 cut(s)	765
BseDI	CCNNGG	4 cut(s)	16, 643, 687, 878
BseGI	GGATG	3 cut(s)	391, 616, 874
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	2 cut(s)	336, 590
BseMII	CTCAG	3 cut(s)	477, 531, 872
BseRI	GAGGAG	2 cut(s)	366, 690
BseXI	GCAGC	1 cut(s)	457
Bsh1285I	CGRYCG	1 cut(s)	503
BshFI	GGCC	3 cut(s)	241, 745, 850
BshTI	ACCGGT	1 cut(s)	51
BshVI	ATCGAT	1 cut(s)	765
BsiEI	CGRYCG	1 cut(s)	503
BsiHKAI	GWGCWC	2 cut(s)	484, 682
BsiHKCI	CYCGRG	1 cut(s)	795
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	2 cut(s)	606, 804
BslI	CCNNNNNNNGG	2 cut(s)	336, 590
BsmAI	GTCTC	1 cut(s)	779
BsmFI	GGGAC	2 cut(s)	606, 804
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	3 cut(s)	241, 745, 850
BsoBI	CYCGRG	1 cut(s)	795
Bsp1286I	GDGCHC	2 cut(s)	484, 682
Bsp143I	GATC	8 cut(s)	39, 87, 190, 202, 500, 616, 712, 762
Bsp1720I	GCTNAGC	1 cut(s)	858
BspACI	CCGC	2 cut(s)	847, 855
BspANI	GGCC	3 cut(s)	241, 745, 850
BspCNI	CTCAG	3 cut(s)	478, 530, 871
BspDI	ATCGAT	1 cut(s)	765
BspPI	GGATC	3 cut(s)	185, 197, 624
BspTI	CTTAAG	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	857
BsrFI	RCCGGY	1 cut(s)	51
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	4 cut(s)	16, 643, 687, 878
BssMI	GATC	8 cut(s)	39, 87, 190, 202, 500, 616, 712, 762
BssT1I	CCWWGG	3 cut(s)	16, 643, 687
Bst6I	CTCTTC	1 cut(s)	450
BstAFI	CTTAAG	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	450, 541, 558
BstDEI	CTNAG	5 cut(s)	321, 486, 517, 858, 903
BstDSI	CCRYGG	1 cut(s)	878
BstEII	GGTNACC	1 cut(s)	265
BstENI	CCTNNNNNAGG	1 cut(s)	334
BstF5I	GGATG	3 cut(s)	391, 616, 874
BstKTI	GATC	8 cut(s)	42, 90, 193, 205, 503, 619, 715, 765
BstMAI	GTCTC	1 cut(s)	779
BstMBI	GATC	8 cut(s)	39, 87, 190, 202, 500, 616, 712, 762
BstMCI	CGRYCG	1 cut(s)	503
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 434, 545
BstNSI	RCATGY	2 cut(s)	432, 574
BstPI	GGTNACC	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	457
BstX2I	RGATCY	2 cut(s)	87, 202
BstYI	RGATCY	2 cut(s)	87, 202
Bsu15I	ATCGAT	1 cut(s)	765
Bsu36I	CCTNAGG	1 cut(s)	486
BsuRI	GGCC	3 cut(s)	241, 745, 850
BsuTUI	ATCGAT	1 cut(s)	765
BtgI	CCRYGG	1 cut(s)	878
BtsCI	GGATG	3 cut(s)	391, 616, 874
BtsI	GCAGTG	1 cut(s)	869
BtsIMutI	CAGTG	3 cut(s)	147, 525, 869
Cac8I	GCNNGC	3 cut(s)	450, 541, 558
Cfr10I	RCCGGY	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	4, 640
ClaI	ATCGAT	1 cut(s)	765
Csp6I	GTAC	1 cut(s)	46
CspAI	ACCGGT	1 cut(s)	51
CspCI	CAANNNNNGTGG	2 cut(s)	860, 895
CviAII	CATG	5 cut(s)	271, 382, 429, 571, 707
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	5 cut(s)	321, 486, 517, 858, 903
DpnI	GATC	8 cut(s)	41, 89, 192, 204, 502, 618, 714, 764
DpnII	GATC	8 cut(s)	39, 87, 190, 202, 500, 616, 712, 762
EaeI	YGGCCR	2 cut(s)	743, 848
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Ecl136II	GAGCTC	2 cut(s)	482, 680
Eco130I	CCWWGG	3 cut(s)	16, 643, 687
Eco147I	AGGCCT	1 cut(s)	241
Eco24I	GRGCYC	2 cut(s)	484, 682
Eco47I	GGWCC	2 cut(s)	4, 640
Eco53kI	GAGCTC	2 cut(s)	482, 680
Eco57I	CTGAAG	1 cut(s)	264
Eco81I	CCTNAGG	1 cut(s)	486
Eco88I	CYCGRG	1 cut(s)	795
Eco91I	GGTNACC	1 cut(s)	265
EcoICRI	GAGCTC	2 cut(s)	482, 680
EcoNI	CCTNNNNNAGG	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	640
EcoO65I	GGTNACC	1 cut(s)	265
EcoRI	GAATTC	1 cut(s)	723
EcoT14I	CCWWGG	3 cut(s)	16, 643, 687
EcoT22I	ATGCAT	1 cut(s)	430
EcoT38I	GRGCYC	2 cut(s)	484, 682
ErhI	CCWWGG	3 cut(s)	16, 643, 687
FaeI	CATG	5 cut(s)	274, 385, 432, 574, 710
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FaqI	GGGAC	2 cut(s)	606, 804
FatI	CATG	5 cut(s)	270, 381, 428, 570, 706
FbaI	TGATCA	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	446, 848
FokI	GGATG	3 cut(s)	398, 623, 861
FriOI	GRGCYC	2 cut(s)	484, 682
Fsp4HI	GCNGC	2 cut(s)	446, 848
FspBI	CTAG	1 cut(s)	910
GluI	GCNGC	2 cut(s)	446, 848
HaeIII	GGCC	3 cut(s)	241, 745, 850
HapII	CCGG	1 cut(s)	52
Hin1II	CATG	5 cut(s)	274, 385, 432, 574, 710
HinfI	GANTC	2 cut(s)	341, 901
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	5 cut(s)	32, 214, 259, 368, 578
Hpy188I	TCNGA	4 cut(s)	373, 500, 729, 784
Hpy188III	TCNNGA	5 cut(s)	113, 128, 233, 485, 797
HpyAV	CCTTC	3 cut(s)	239, 330, 878
HpyCH4V	TGCA	9 cut(s)	93, 124, 405, 428, 452, 543, 806, 836, 891
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 434, 545
HpyF3I	CTNAG	5 cut(s)	321, 486, 517, 858, 903
Hsp92II	CATG	5 cut(s)	274, 385, 432, 574, 710
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	8 cut(s)	39, 87, 190, 202, 500, 616, 712, 762
LmnI	GCTCC	4 cut(s)	367, 487, 586, 677
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	3 cut(s)	133, 642, 781
MaeI	CTAG	1 cut(s)	910
MaeIII	GTNAC	2 cut(s)	265, 566
MalI	GATC	8 cut(s)	41, 89, 192, 204, 502, 618, 714, 764
MbiI	CCGCTC	1 cut(s)	857
MboI	GATC	8 cut(s)	39, 87, 190, 202, 500, 616, 712, 762
MboII	GAAGA	2 cut(s)	164, 467
MfeI	CAATTG	1 cut(s)	886
MflI	RGATCY	2 cut(s)	87, 202
MhlI	GDGCHC	2 cut(s)	484, 682
MlsI	TGGCCA	1 cut(s)	745
MluCI	AATT	6 cut(s)	218, 228, 723, 737, 755, 886
MluNI	TGGCCA	1 cut(s)	745
MlyI	GAGTC	1 cut(s)	895
Mox20I	TGGCCA	1 cut(s)	745
Mph1103I	ATGCAT	1 cut(s)	430
MroXI	GAANNNNTTC	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	745
MseI	TTAA	3 cut(s)	66, 155, 180
Msp20I	TGGCCA	1 cut(s)	745
MspCI	CTTAAG	1 cut(s)	65
MspI	CCGG	1 cut(s)	52
MunI	CAATTG	1 cut(s)	886
Mva1269I	GAATGC	1 cut(s)	430
MwoI	GCNNNNNNNGC	3 cut(s)	311, 434, 545
NdeII	GATC	8 cut(s)	39, 87, 190, 202, 500, 616, 712, 762
NlaIII	CATG	5 cut(s)	274, 385, 432, 574, 710
NmuCI	GTSAC	2 cut(s)	265, 566
NsiI	ATGCAT	1 cut(s)	430
NspI	RCATGY	2 cut(s)	432, 574
PceI	AGGCCT	1 cut(s)	241
PciI	ACATGT	1 cut(s)	570
PctI	GAATGC	1 cut(s)	430
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	341
PinAI	ACCGGT	1 cut(s)	51
PkrI	GCNGC	2 cut(s)	447, 849
Ple19I	CGATCG	1 cut(s)	503
PleI	GAGTC	1 cut(s)	895
PpsI	GAGTC	1 cut(s)	895
PpuMI	RGGWCCY	1 cut(s)	640
PscI	ACATGT	1 cut(s)	570
Psp124BI	GAGCTC	2 cut(s)	484, 682
Psp5II	RGGWCCY	1 cut(s)	640
PspEI	GGTNACC	1 cut(s)	265
PspPI	GGNCC	2 cut(s)	4, 640
PspPPI	RGGWCCY	1 cut(s)	640
PsuI	RGATCY	2 cut(s)	87, 202
PvuI	CGATCG	1 cut(s)	503
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SacI	GAGCTC	2 cut(s)	484, 682
SaqAI	TTAA	3 cut(s)	66, 155, 180
SatI	GCNGC	2 cut(s)	446, 848
Sau3AI	GATC	8 cut(s)	39, 87, 190, 202, 500, 616, 712, 762
Sau96I	GGNCC	2 cut(s)	4, 640
SchI	GAGTC	1 cut(s)	895
SduI	GDGCHC	2 cut(s)	484, 682
SfaNI	GCATC	3 cut(s)	133, 642, 781
SinI	GGWCC	2 cut(s)	4, 640
SmlI	CTYRAG	3 cut(s)	8, 65, 331
SmoI	CTYRAG	3 cut(s)	8, 65, 331
Sse9I	AATT	6 cut(s)	218, 228, 723, 737, 755, 886
SseBI	AGGCCT	1 cut(s)	241
SsiI	CCGC	2 cut(s)	847, 855
SspI	AATATT	1 cut(s)	169
SspMI	CTAG	1 cut(s)	910
SstI	GAGCTC	2 cut(s)	484, 682
StuI	AGGCCT	1 cut(s)	241
StyI	CCWWGG	3 cut(s)	16, 643, 687
TaqI	TCGA	6 cut(s)	127, 414, 658, 699, 765, 828
TasI	AATT	6 cut(s)	218, 228, 723, 737, 755, 886
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	1 cut(s)	850
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	3 cut(s)	66, 155, 180
Tru9I	TTAA	3 cut(s)	66, 155, 180
TscAI	CASTG	3 cut(s)	154, 525, 869
TseFI	GTSAC	2 cut(s)	265, 566
TseI	GCWGC	1 cut(s)	445
Tsp45I	GTSAC	2 cut(s)	265, 566
TspDTI	ATGAA	1 cut(s)	740
TspGWI	ACGGA	1 cut(s)	867
TspRI	CASTG	3 cut(s)	154, 525, 869
Vha464I	CTTAAG	1 cut(s)	65
VpaK11BI	GGWCC	2 cut(s)	4, 640
XagI	CCTNNNNNAGG	1 cut(s)	334
XapI	RAATTY	3 cut(s)	218, 723, 737
XceI	RCATGY	2 cut(s)	432, 574
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	1 cut(s)	910
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.