Rroxscaffold_2G00145000
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
82862987 .. 82865805
2819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00145000.1

Sequence Viewer

Length: 1203 bp
ATGAGGGGTATCGACTCTTACAGAAAAGGAGGGTACCACGCCGTCAGGATCGGCGATCAGTTCGCCGGCGGCCGATATGTTGCTCAGAGAAAACTGGGTTGGGGTCAATTCTCCACCGTGTGGCTCGCATACGACACCACCAACTCTACGTACGTTGCTCTTAAGATTCAAAAAAGTGCAGCTCAATTTGCTCAAGCTGCTCTCCATGAGATTCAAATTCTTACGGCTATTGCGGAAGGTGACTCCTCGAATTCAAAGTGTGTTGTACGACTGATTGACCATTTTAAGCACGCAGGCCCAAATGGGCAGCATTTATGCATGGTCCTTGAGTTCCTTGGTGATAGCTTACTTCGGCTGATCAAGTACAACCGGTATAAAGGTCTTAAGTTGAATAATGTTAGGGAGATCTGCAAATGTATATTGATGGGTCTGGATTATTTGCATAGAGAACTTGGTATAATCCACACTGACTTAAAACCAGAAAATATTCTTCTCTTTAACACCATTGATCCCACCAAAGATCCTGTCAGGTCTAAATTCACCCCAATTCTTGAAAGGCCTGAAGGAAACCTGAATGGTGGAGTCACCATGAGCCTTATTGAGAAAAAACTCAAAAGGAGGGCAAGGAGAGCAGTTGCTAAGATTTCCTTGAGAAGGGAATCTATGGGGGAGGAGCTTGCAGAAGAGATACAAACGAGGCAATATAGAGCTCCTGAGGTTATTCTCCGATCTGGTTATACCTACTCAGTGGATATGTGGTCATTCGCTTGCACAGCCTTTGAGCTTGCGACAGGTGACATGTTGTTTGCTCCGAAGATGGGGCAAGGCTTTAGTGAGGATGAGGATCACCTTGCTTTGATGATGGAGGTCCTTGGAAAGATGCCTCGAAAGGTAGCCATTGGAGGAGCTCGTTCCAAGGATTATTTCGACAGACATGGCGATCTAAAGAGAATTCGGAGGCTGAAATTTTGGCCACTTCATAAATTACTGATCGATAGATACAACTTTTCCGAGACTGATGCTCGGGAGTTTGCAGAGTTCCTCTGTCCCATTTTCGACTTTGCACCAGAGAAGCGGCCAACCGCTCAGCAAATGAGGTTGGCAAGTGAAGAAGGGAATGAAGGAGAGGAAGTTACATCTTACCACACTGTTTTGACGCCGCCACCTCAACCGCCCCTTTTGACCATTGATTTTGTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

400

Amino Acids

45.55

Weight (kDa)

8.95

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 26 - 166 1.3e-22 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 29 - 166 3.8e-10 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 224 - 365 1.2e-13 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 33
AccB1I GGYRCC 1 cut(s) 33
AccB7I CCANNNNNTGG 1 cut(s) 120
AccBSI CCGCTC 1 cut(s) 1085
AciI CCGC 6 cut(s) 69, 233, 1075, 1083, 1160, 1172
AclWI GGATC 4 cut(s) 56, 503, 515, 852
AcoI YGGCCR 3 cut(s) 70, 971, 1076
AcsI RAATTY 5 cut(s) 216, 250, 536, 951, 965
AcuI CTGAAG 1 cut(s) 582
AcyI GRCGYC 1 cut(s) 1157
AdeI CACNNNGTG 1 cut(s) 120
AfaI GTAC 4 cut(s) 35, 152, 267, 365
AfiI CCNNNNNNNGG 3 cut(s) 120, 654, 818
AflII CTTAAG 2 cut(s) 161, 383
AflIII ACRYGT 1 cut(s) 798
AgeI ACCGGT 1 cut(s) 369
AgsI TTSAA 5 cut(s) 170, 215, 255, 391, 554
AjuI GAANNNNNNNTTGG 4 cut(s) 82, 114, 908, 940
AluBI AGCT 7 cut(s) 182, 197, 345, 676, 710, 784, 908
AluI AGCT 7 cut(s) 182, 197, 345, 676, 710, 784, 908
Alw21I GWGCWC 2 cut(s) 712, 910
Alw26I GTCTC 1 cut(s) 1007
AlwI GGATC 4 cut(s) 56, 503, 515, 852
Ama87I CYCGRG 1 cut(s) 1023
AoxI GGCC 5 cut(s) 70, 295, 557, 971, 1076
ApeKI GCWGC 3 cut(s) 179, 197, 307
ApoI RAATTY 5 cut(s) 216, 250, 536, 951, 965
ArsI GACNNNNNNTTYG 4 cut(s) 510, 542, 788, 820
AsiGI ACCGGT 1 cut(s) 369
Asp700I GAANNNNTTC 1 cut(s) 486
Asp718I GGTACC 1 cut(s) 33
AspS9I GGNCC 3 cut(s) 296, 322, 868
AsuHPI GGTGA 6 cut(s) 251, 350, 532, 577, 806, 839
AvaI CYCGRG 1 cut(s) 1023
AvaII GGWCC 2 cut(s) 322, 868
AxyI CCTNAGG 1 cut(s) 714
BalI TGGCCA 1 cut(s) 973
BanI GGYRCC 1 cut(s) 33
BanII GRGCYC 2 cut(s) 712, 910
Bbv12I GWGCWC 2 cut(s) 712, 910
BbvI GCAGC 3 cut(s) 184, 191, 319
BccI CCATC 3 cut(s) 418, 811, 856
BceAI ACGGC 2 cut(s) 26, 240
BcgI CGANNNNNNTGC 2 cut(s) 1001, 1035
BclI TGATCA 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 1007
BfrI CTTAAG 2 cut(s) 161, 383
BglII AGATCT 1 cut(s) 405
BisI GCNGC 6 cut(s) 70, 180, 198, 308, 1076, 1160
BlpI GCTNAGC 1 cut(s) 1086
BlsI GCNGC 6 cut(s) 71, 181, 199, 309, 1077, 1161
Bme18I GGWCC 2 cut(s) 322, 868
BmeT110I CYCGRG 1 cut(s) 1023
BmgT120I GGNCC 3 cut(s) 296, 322, 868
BmiI GGNNCC 1 cut(s) 35
BmrI ACTGGG 1 cut(s) 104
BmsI GCATC 2 cut(s) 870, 1009
BmuI ACTGGG 1 cut(s) 104
Bpu1102I GCTNAGC 1 cut(s) 1086
BpuEI CTTGAG 3 cut(s) 177, 347, 670
Bsa29I ATCGAT 1 cut(s) 993
BsaAI YACGTR 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 843
BsaHI GRCGYC 1 cut(s) 1157
BsaJI CCNNGG 3 cut(s) 334, 871, 915
BsaWI WCCGGW 1 cut(s) 369
BsaXI ACNNNNNCTCC 2 cut(s) 1116, 1146
Bsc4I CCNNNNNNNGG 3 cut(s) 120, 654, 818
Bse118I RCCGGY 2 cut(s) 65, 369
Bse1I ACTGG 1 cut(s) 99
Bse21I CCTNAGG 1 cut(s) 714
Bse8I GATNNNNATC 1 cut(s) 843
BseCI ATCGAT 1 cut(s) 993
BseDI CCNNGG 3 cut(s) 334, 871, 915
BseGI GGATG 1 cut(s) 844
BseJI GATNNNNATC 1 cut(s) 843
BseLI CCNNNNNNNGG 3 cut(s) 120, 654, 818
BseMII CTCAG 4 cut(s) 98, 705, 759, 1100
BseNI ACTGG 1 cut(s) 99
BseRI GAGGAG 3 cut(s) 235, 686, 918
BseX3I CGGCCG 1 cut(s) 70
BseXI GCAGC 3 cut(s) 184, 191, 319
BsgI GTGCAG 1 cut(s) 198
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 5 cut(s) 72, 297, 559, 973, 1078
BshNI GGYRCC 1 cut(s) 33
BshTI ACCGGT 1 cut(s) 369
BshVI ATCGAT 1 cut(s) 993
BsiEI CGRYCG 1 cut(s) 73
BsiHKAI GWGCWC 2 cut(s) 712, 910
BsiHKCI CYCGRG 1 cut(s) 1023
BsiSI CCGG 2 cut(s) 66, 370
BsiWI CGTACG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 1032
BslI CCNNNNNNNGG 3 cut(s) 120, 654, 818
BsmAI GTCTC 1 cut(s) 1007
BsmFI GGGAC 1 cut(s) 1032
BsnI GGCC 5 cut(s) 72, 297, 559, 973, 1078
BsoBI CYCGRG 1 cut(s) 1023
Bsp1286I GDGCHC 2 cut(s) 712, 910
Bsp1720I GCTNAGC 1 cut(s) 1086
BspACI CCGC 6 cut(s) 69, 233, 1075, 1083, 1160, 1172
BspANI GGCC 5 cut(s) 72, 297, 559, 973, 1078
BspCNI CTCAG 4 cut(s) 97, 706, 758, 1099
BspDI ATCGAT 1 cut(s) 993
BspLI GGNNCC 1 cut(s) 35
BspPI GGATC 4 cut(s) 56, 503, 515, 852
BspT107I GGYRCC 1 cut(s) 33
BspTI CTTAAG 2 cut(s) 161, 383
BsrBI CCGCTC 1 cut(s) 1085
BsrFI RCCGGY 2 cut(s) 65, 369
BsrI ACTGG 1 cut(s) 99
BssAI RCCGGY 2 cut(s) 65, 369
BssECI CCNNGG 3 cut(s) 334, 871, 915
BssNI GRCGYC 1 cut(s) 1157
BssT1I CCWWGG 3 cut(s) 334, 871, 915
Bst4CI ACNGT 2 cut(s) 118, 1150
Bst6I CTCTTC 1 cut(s) 678
BstACI GRCGYC 1 cut(s) 1157
BstAFI CTTAAG 2 cut(s) 161, 383
BstBAI YACGTR 1 cut(s) 150
BstC8I GCNNGC 7 cut(s) 67, 126, 291, 295, 678, 769, 786
BstDEI CTNAG 5 cut(s) 84, 639, 714, 745, 1086
BstENI CCTNNNNNAGG 1 cut(s) 652
BstF5I GGATG 1 cut(s) 844
BstMAI GTCTC 1 cut(s) 1007
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 4 cut(s) 188, 197, 629, 773
BstNSI RCATGY 1 cut(s) 802
BstSNI TACGTA 1 cut(s) 150
BstV1I GCAGC 3 cut(s) 184, 191, 319
BstX2I RGATCY 2 cut(s) 405, 520
BstYI RGATCY 2 cut(s) 405, 520
BstZI CGGCCG 1 cut(s) 70
Bsu15I ATCGAT 1 cut(s) 993
Bsu36I CCTNAGG 1 cut(s) 714
BsuRI GGCC 5 cut(s) 72, 297, 559, 973, 1078
BsuTUI ATCGAT 1 cut(s) 993
BtsCI GGATG 1 cut(s) 844
BtsIMutI CAGTG 3 cut(s) 465, 753, 1146
Cac8I GCNNGC 7 cut(s) 67, 126, 291, 295, 678, 769, 786
Cfr10I RCCGGY 2 cut(s) 65, 369
Cfr13I GGNCC 3 cut(s) 296, 322, 868
ClaI ATCGAT 1 cut(s) 993
CseI GACGC 1 cut(s) 1165
Csp6I GTAC 4 cut(s) 34, 151, 266, 364
CspAI ACCGGT 1 cut(s) 369
CviAII CATG 5 cut(s) 206, 319, 589, 799, 935
CviQI GTAC 4 cut(s) 34, 151, 266, 364
DdeI CTNAG 5 cut(s) 84, 639, 714, 745, 1086
DraIII CACNNNGTG 1 cut(s) 120
EaeI YGGCCR 3 cut(s) 70, 971, 1076
EagI CGGCCG 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 678
EarI CTCTTC 1 cut(s) 678
Ecl136II GAGCTC 2 cut(s) 710, 908
EclXI CGGCCG 1 cut(s) 70
Eco105I TACGTA 1 cut(s) 150
Eco130I CCWWGG 3 cut(s) 334, 871, 915
Eco147I AGGCCT 1 cut(s) 559
Eco24I GRGCYC 2 cut(s) 712, 910
Eco47I GGWCC 2 cut(s) 322, 868
Eco52I CGGCCG 1 cut(s) 70
Eco53kI GAGCTC 2 cut(s) 710, 908
Eco57I CTGAAG 1 cut(s) 582
Eco81I CCTNAGG 1 cut(s) 714
Eco88I CYCGRG 1 cut(s) 1023
EcoICRI GAGCTC 2 cut(s) 710, 908
EcoNI CCTNNNNNAGG 1 cut(s) 652
EcoO109I RGGNCCY 1 cut(s) 868
EcoRI GAATTC 2 cut(s) 250, 951
EcoT14I CCWWGG 3 cut(s) 334, 871, 915
EcoT22I ATGCAT 1 cut(s) 320
EcoT38I GRGCYC 2 cut(s) 712, 910
ErhI CCWWGG 3 cut(s) 334, 871, 915
FaeI CATG 5 cut(s) 209, 322, 592, 802, 938
FalI AAGNNNNNCTT 2 cut(s) 632, 664
FaqI GGGAC 1 cut(s) 1032
FatI CATG 5 cut(s) 205, 318, 588, 798, 934
FbaI TGATCA 1 cut(s) 357
Fnu4HI GCNGC 6 cut(s) 70, 180, 198, 308, 1076, 1160
FokI GGATG 1 cut(s) 851
FriOI GRGCYC 2 cut(s) 712, 910
Fsp4HI GCNGC 6 cut(s) 70, 180, 198, 308, 1076, 1160
GluI GCNGC 6 cut(s) 70, 180, 198, 308, 1076, 1160
HaeIII GGCC 5 cut(s) 72, 297, 559, 973, 1078
HapII CCGG 2 cut(s) 66, 370
HgaI GACGC 1 cut(s) 1165
Hin1I GRCGYC 1 cut(s) 1157
Hin1II CATG 5 cut(s) 209, 322, 592, 802, 938
HinfI GANTC 6 cut(s) 14, 166, 211, 242, 582, 659
HpaII CCGG 2 cut(s) 66, 370
HphI GGTGA 6 cut(s) 251, 350, 532, 577, 806, 839
Hpy188I TCNGA 5 cut(s) 87, 728, 813, 957, 1012
Hpy188III TCNNGA 5 cut(s) 46, 431, 551, 713, 1025
HpyAV CCTTC 5 cut(s) 230, 557, 648, 1106, 1115
HpyCH4III ACNGT 2 cut(s) 118, 1150
HpyCH4IV ACGT 2 cut(s) 149, 153
HpyCH4V TGCA 8 cut(s) 179, 318, 411, 442, 680, 771, 1034, 1064
HpyF10VI GCNNNNNNNGC 4 cut(s) 188, 197, 629, 773
HpyF3I CTNAG 5 cut(s) 84, 639, 714, 745, 1086
HpySE526I ACGT 2 cut(s) 149, 153
Hsp92I GRCGYC 1 cut(s) 1157
Hsp92II CATG 5 cut(s) 209, 322, 592, 802, 938
KpnI GGTACC 1 cut(s) 37
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 357
LmnI GCTCC 4 cut(s) 673, 715, 814, 905
Lsp1109I GCAGC 3 cut(s) 184, 191, 319
LweI GCATC 2 cut(s) 870, 1009
MaeII ACGT 2 cut(s) 149, 153
MaeIII GTNAC 4 cut(s) 239, 583, 794, 1132
MbiI CCGCTC 1 cut(s) 1085
MboII GAAGA 4 cut(s) 482, 695, 826, 1121
MflI RGATCY 2 cut(s) 405, 520
MhlI GDGCHC 2 cut(s) 712, 910
MlsI TGGCCA 1 cut(s) 973
MluCI AATT 9 cut(s) 107, 185, 216, 250, 536, 546, 951, 965, 983
MluNI TGGCCA 1 cut(s) 973
MlyI GAGTC 3 cut(s) 8, 236, 591
Mox20I TGGCCA 1 cut(s) 973
Mph1103I ATGCAT 1 cut(s) 320
MreI CGCCGGCG 1 cut(s) 65
MroNI GCCGGC 1 cut(s) 65
MroXI GAANNNNTTC 1 cut(s) 486
MscI TGGCCA 1 cut(s) 973
MseI TTAA 6 cut(s) 162, 285, 384, 473, 498, 1201
Msp20I TGGCCA 1 cut(s) 973
MspCI CTTAAG 2 cut(s) 161, 383
MspI CCGG 2 cut(s) 66, 370
MwoI GCNNNNNNNGC 4 cut(s) 188, 197, 629, 773
NaeI GCCGGC 1 cut(s) 67
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 5 cut(s) 209, 322, 592, 802, 938
NlaIV GGNNCC 1 cut(s) 35
NmuCI GTSAC 3 cut(s) 239, 583, 794
NsiI ATGCAT 1 cut(s) 320
NspI RCATGY 1 cut(s) 802
PceI AGGCCT 1 cut(s) 559
PciI ACATGT 1 cut(s) 798
PdiI GCCGGC 1 cut(s) 67
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 3 cut(s) 166, 211, 659
Pfl23II CGTACG 1 cut(s) 150
PflMI CCANNNNNTGG 1 cut(s) 120
PinAI ACCGGT 1 cut(s) 369
PkrI GCNGC 6 cut(s) 71, 181, 199, 309, 1077, 1161
PleI GAGTC 3 cut(s) 8, 236, 590
PpsI GAGTC 3 cut(s) 8, 236, 590
Ppu21I YACGTR 1 cut(s) 150
PpuMI RGGWCCY 1 cut(s) 868
PscI ACATGT 1 cut(s) 798
Psp124BI GAGCTC 2 cut(s) 712, 910
Psp5II RGGWCCY 1 cut(s) 868
PspLI CGTACG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 35
PspPI GGNCC 3 cut(s) 296, 322, 868
PspPPI RGGWCCY 1 cut(s) 868
PsuI RGATCY 2 cut(s) 405, 520
RsaI GTAC 4 cut(s) 35, 152, 267, 365
RsaNI GTAC 4 cut(s) 34, 151, 266, 364
SacI GAGCTC 2 cut(s) 712, 910
SaqAI TTAA 6 cut(s) 162, 285, 384, 473, 498, 1201
SatI GCNGC 6 cut(s) 70, 180, 198, 308, 1076, 1160
Sau96I GGNCC 3 cut(s) 296, 322, 868
SchI GAGTC 3 cut(s) 8, 236, 591
SduI GDGCHC 2 cut(s) 712, 910
SfaNI GCATC 2 cut(s) 870, 1009
SgrAI CRCCGGYG 1 cut(s) 65
SinI GGWCC 2 cut(s) 322, 868
SmlI CTYRAG 5 cut(s) 161, 192, 326, 383, 649
SmoI CTYRAG 5 cut(s) 161, 192, 326, 383, 649
SnaBI TACGTA 1 cut(s) 150
Sse9I AATT 9 cut(s) 107, 185, 216, 250, 536, 546, 951, 965, 983
SseBI AGGCCT 1 cut(s) 559
SsiI CCGC 6 cut(s) 69, 233, 1075, 1083, 1160, 1172
SspI AATATT 1 cut(s) 487
SstI GAGCTC 2 cut(s) 712, 910
StuI AGGCCT 1 cut(s) 559
StyI CCWWGG 3 cut(s) 334, 871, 915
TaaI ACNGT 2 cut(s) 118, 1150
TaiI ACGT 2 cut(s) 152, 156
TaqI TCGA 6 cut(s) 12, 248, 886, 927, 993, 1056
TasI AATT 9 cut(s) 107, 185, 216, 250, 536, 546, 951, 965, 983
TatI WGTACW 1 cut(s) 363
TauI GCSGC 3 cut(s) 72, 1078, 1162
TfiI GAWTC 3 cut(s) 166, 211, 659
Tru1I TTAA 6 cut(s) 162, 285, 384, 473, 498, 1201
Tru9I TTAA 6 cut(s) 162, 285, 384, 473, 498, 1201
TscAI CASTG 3 cut(s) 472, 753, 1153
TseFI GTSAC 3 cut(s) 239, 583, 794
TseI GCWGC 3 cut(s) 179, 197, 307
Tsp45I GTSAC 3 cut(s) 239, 583, 794
TspDTI ATGAA 2 cut(s) 968, 1134
TspRI CASTG 3 cut(s) 472, 753, 1153
Van91I CCANNNNNTGG 1 cut(s) 120
Vha464I CTTAAG 2 cut(s) 161, 383
VpaK11BI GGWCC 2 cut(s) 322, 868
XagI CCTNNNNNAGG 1 cut(s) 652
XapI RAATTY 5 cut(s) 216, 250, 536, 951, 965
XceI RCATGY 1 cut(s) 802
XcmI CCANNNNNNNNNTGG 1 cut(s) 1192
XmnI GAANNNNTTC 1 cut(s) 486
Zsp2I ATGCAT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.