Rmu_sc0007057.1_g000004

Plant calmodulin-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007057.1
OG0006942
Physical Location & Seq
Forward (+)
14332 .. 15393
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1062 bp
atgaattccgatgtggaaagcagcaatggtgcagaatcagatttgtgtgagaaaacgggggtctctttagctcccataaggtaccctgaggtgccaatggtagcaacagaaggatcaaatggaggaggaaccagtgcaaaatctggattctttcaaggatcctctccacctgaagagtctcattcggagagcaatgctgatgtaacgcatgtcactcagttggaaaaacagaactacacaaggctatggtactttgtatataagcacatggtatcaagcattgctgaaaaagatggagatgaagcacatgatggtgcagatgaggaacaaggaattgacaccaacacattgcctcgagcagaggtggatcgagagctgaacttgacaaatcagcatgcagacaacaaaaagaatgaactccgccgtattgaaactgtcaaaatggtggagaaagcaattgatgaaatacttcttccagaaaaccaggatgaatcagaagacgatcaatcaaacaacagagacttaatttcagaccaggaaccaccagaaaataaagttggcatagaaggaaaatctttcgcaactttttcctactttgccaaagatagcttcagagagtccaaaaagaaagcaggggaagatccaaaacaaatattgctcaaatctgataatgctgtcattgaggatgtagagaaggaagtgctgatggtagaagagaaacctaaacagaaaatgtcaaagaactggagaaatctgaagaaaatgattctgcttaataggtttatcaaggcattagagaaaggaaagaagtccaacccacgagggccaaaatatctgctcttggagcctgaccccgaaacagaaaaagttaatctaaagcatcaaaacatggatgagaggaagaatgctgaggagtggatgcttgattatgcacttcaaaaggctgttgctaaattaactccagctcggaatagaaaagtagcactgcttgttgaggcttttgaaacagttattccaaataatggaatcccaaacccgttcaagccagaagtcatttgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CaM_binding

Protein Analysis

353

Amino Acids

39.85

Weight (kDa)

5.09

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CaM_binding PF07839 238 - 339 9.1e-33 Plant calmodulin-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 81
AccB1I GGYRCC 2 cut(s) 81, 91
AccB7I CCANNNNNTGG 1 cut(s) 1022
AciI CCGC 1 cut(s) 421
AclWI GGATC 5 cut(s) 121, 153, 166, 375, 635
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 3 cut(s) 192, 595, 776
AfaI GTAC 2 cut(s) 83, 251
AfiI CCNNNNNNNGG 1 cut(s) 1022
AgsI TTSAA 5 cut(s) 155, 431, 938, 1004, 1042
AjnI CCWGG 2 cut(s) 483, 534
AjuI GAANNNNNNNTTGG 4 cut(s) 540, 572, 593, 625
AluBI AGCT 4 cut(s) 71, 376, 609, 965
AluI AGCT 4 cut(s) 71, 376, 609, 965
Alw26I GTCTC 3 cut(s) 67, 183, 513
AlwI GGATC 5 cut(s) 121, 153, 166, 375, 635
Ama87I CYCGRG 1 cut(s) 354
AoxI GGCC 1 cut(s) 824
ApeKI GCWGC 1 cut(s) 21
ApoI RAATTY 1 cut(s) 4
Asp700I GAANNNNTTC 1 cut(s) 468
Asp718I GGTACC 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 824
AvaI CYCGRG 1 cut(s) 354
AxyI CCTNAGG 1 cut(s) 87
BamHI GGATCC 1 cut(s) 158
BanI GGYRCC 2 cut(s) 81, 91
BauI CACGAG 1 cut(s) 819
BbsI GAAGAC 1 cut(s) 504
BbvCI CCTCAGC 1 cut(s) 909
BbvI GCAGC 1 cut(s) 33
BccI CCATC 3 cut(s) 287, 305, 700
BceAI ACGGC 1 cut(s) 408
BciT130I CCWGG 2 cut(s) 485, 536
BcoDI GTCTC 3 cut(s) 67, 183, 513
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
Bme1390I CCNGG 2 cut(s) 485, 536
BmeT110I CYCGRG 1 cut(s) 354
BmgT120I GGNCC 1 cut(s) 824
BmiI GGNNCC 6 cut(s) 83, 93, 130, 160, 540, 846
BmrFI CCNGG 2 cut(s) 485, 536
BmsI GCATC 2 cut(s) 889, 909
BpiI GAAGAC 1 cut(s) 504
BpmI CTGGAG 2 cut(s) 766, 945
Bpu10I CCTNAGC 1 cut(s) 909
BsaI GGTCTC 1 cut(s) 67
Bsc4I CCNNNNNNNGG 1 cut(s) 1022
Bse1I ACTGG 2 cut(s) 132, 749
Bse21I CCTNAGG 1 cut(s) 87
Bse3DI GCAATG 4 cut(s) 31, 199, 279, 347
BseBI CCWGG 2 cut(s) 485, 536
BseGI GGATG 4 cut(s) 493, 691, 898, 924
BseLI CCNNNNNNNGG 1 cut(s) 1022
BseMI GCAATG 4 cut(s) 31, 199, 279, 347
BseMII CTCAG 3 cut(s) 78, 230, 900
BseNI ACTGG 2 cut(s) 132, 749
BseRI GAGGAG 2 cut(s) 138, 926
BseXI GCAGC 1 cut(s) 33
BsgI GTGCAG 2 cut(s) 51, 336
BshFI GGCC 1 cut(s) 826
BshNI GGYRCC 2 cut(s) 81, 91
BsiHKCI CYCGRG 1 cut(s) 354
BslI CCNNNNNNNGG 1 cut(s) 1022
BsmAI GTCTC 3 cut(s) 67, 183, 513
BsmI GAATGC 1 cut(s) 910
BsnI GGCC 1 cut(s) 826
Bso31I GGTCTC 1 cut(s) 67
BsoBI CYCGRG 1 cut(s) 354
Bsp143I GATC 5 cut(s) 113, 158, 367, 502, 640
BspACI CCGC 1 cut(s) 421
BspANI GGCC 1 cut(s) 826
BspCNI CTCAG 3 cut(s) 79, 229, 901
BspLI GGNNCC 6 cut(s) 83, 93, 130, 160, 540, 846
BspPI GGATC 5 cut(s) 121, 153, 166, 375, 635
BspT107I GGYRCC 2 cut(s) 81, 91
BspTNI GGTCTC 1 cut(s) 67
BsrDI GCAATG 4 cut(s) 31, 199, 279, 347
BsrI ACTGG 2 cut(s) 132, 749
BssMI GATC 5 cut(s) 113, 158, 367, 502, 640
BssSI CACGAG 1 cut(s) 819
Bst2BI CACGAG 1 cut(s) 819
Bst2UI CCWGG 2 cut(s) 485, 536
Bst4CI ACNGT 2 cut(s) 436, 1009
Bst6I CTCTTC 2 cut(s) 168, 708
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 3 cut(s) 87, 216, 909
BstF5I GGATG 4 cut(s) 493, 691, 898, 924
BstKTI GATC 5 cut(s) 116, 161, 370, 505, 643
BstMAI GTCTC 3 cut(s) 67, 183, 513
BstMBI GATC 5 cut(s) 113, 158, 367, 502, 640
BstMWI GCNNNNNNNGC 1 cut(s) 844
BstNI CCWGG 2 cut(s) 485, 536
BstNSI RCATGY 2 cut(s) 212, 398
BstSCI CCNGG 2 cut(s) 483, 534
BstV1I GCAGC 1 cut(s) 33
BstV2I GAAGAC 1 cut(s) 504
BstX2I RGATCY 2 cut(s) 158, 640
BstYI RGATCY 2 cut(s) 158, 640
Bsu36I CCTNAGG 1 cut(s) 87
BsuRI GGCC 1 cut(s) 826
BtsCI GGATG 4 cut(s) 493, 691, 898, 924
BtsI GCAGTG 1 cut(s) 983
BtsIMutI CAGTG 2 cut(s) 139, 983
Cac8I GCNNGC 1 cut(s) 396
Cfr13I GGNCC 1 cut(s) 824
Csp6I GTAC 2 cut(s) 82, 250
CviAII CATG 5 cut(s) 209, 268, 308, 395, 889
CviQI GTAC 2 cut(s) 82, 250
DdeI CTNAG 3 cut(s) 87, 216, 909
DpnI GATC 5 cut(s) 115, 160, 369, 504, 642
DpnII GATC 5 cut(s) 113, 158, 367, 502, 640
Eam1104I CTCTTC 2 cut(s) 168, 708
EarI CTCTTC 2 cut(s) 168, 708
EciI GGCGGA 1 cut(s) 410
Eco31I GGTCTC 1 cut(s) 67
Eco57I CTGAAG 3 cut(s) 192, 595, 776
Eco81I CCTNAGG 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 354
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 483, 534
FaeI CATG 5 cut(s) 212, 271, 311, 398, 892
FatI CATG 5 cut(s) 208, 267, 307, 394, 888
Fnu4HI GCNGC 1 cut(s) 22
FokI GGATG 4 cut(s) 500, 698, 905, 931
Fsp4HI GCNGC 1 cut(s) 22
GluI GCNGC 1 cut(s) 22
GsuI CTGGAG 2 cut(s) 766, 945
HaeIII GGCC 1 cut(s) 826
Hin1II CATG 5 cut(s) 212, 271, 311, 398, 892
HinfI GANTC 7 cut(s) 35, 147, 176, 491, 617, 766, 1026
Hpy188I TCNGA 9 cut(s) 10, 40, 187, 496, 532, 614, 667, 756, 969
Hpy188III TCNNGA 3 cut(s) 144, 371, 476
HpyAV CCTTC 3 cut(s) 104, 560, 688
HpyCH4III ACNGT 2 cut(s) 436, 1009
HpyCH4V TGCA 5 cut(s) 32, 137, 317, 398, 932
HpyF10VI GCNNNNNNNGC 1 cut(s) 844
HpyF3I CTNAG 3 cut(s) 87, 216, 909
Hsp92II CATG 5 cut(s) 212, 271, 311, 398, 892
KpnI GGTACC 1 cut(s) 85
Kzo9I GATC 5 cut(s) 113, 158, 367, 502, 640
LmnI GCTCC 2 cut(s) 76, 844
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 2 cut(s) 889, 909
MaeIII GTNAC 2 cut(s) 202, 211
MalI GATC 5 cut(s) 115, 160, 369, 504, 642
MboI GATC 5 cut(s) 113, 158, 367, 502, 640
MboII GAAGA 7 cut(s) 185, 464, 509, 650, 725, 769, 913
MfeI CAATTG 1 cut(s) 456
MflI RGATCY 2 cut(s) 158, 640
MluCI AATT 5 cut(s) 4, 333, 456, 525, 953
MlyI GAGTC 2 cut(s) 185, 626
MmeI TCCRAC 2 cut(s) 201, 837
MroXI GAANNNNTTC 1 cut(s) 468
MseI TTAA 4 cut(s) 524, 774, 870, 956
MslI CAYNNNNRTG 1 cut(s) 312
MspR9I CCNGG 2 cut(s) 485, 536
MunI CAATTG 1 cut(s) 456
Mva1269I GAATGC 1 cut(s) 910
MvaI CCWGG 2 cut(s) 485, 536
MwoI GCNNNNNNNGC 1 cut(s) 844
NdeII GATC 5 cut(s) 113, 158, 367, 502, 640
NlaIII CATG 5 cut(s) 212, 271, 311, 398, 892
NlaIV GGNNCC 6 cut(s) 83, 93, 130, 160, 540, 846
NmuCI GTSAC 1 cut(s) 211
NspI RCATGY 2 cut(s) 212, 398
PaeI GCATGC 1 cut(s) 398
PaeR7I CTCGAG 1 cut(s) 354
PctI GAATGC 1 cut(s) 910
PdmI GAANNNNTTC 1 cut(s) 468
PfeI GAWTC 5 cut(s) 35, 147, 491, 766, 1026
PflMI CCANNNNNTGG 1 cut(s) 1022
PkrI GCNGC 1 cut(s) 23
PleI GAGTC 2 cut(s) 184, 625
PpsI GAGTC 2 cut(s) 184, 625
Psp6I CCWGG 2 cut(s) 483, 534
PspGI CCWGG 2 cut(s) 483, 534
PspN4I GGNNCC 6 cut(s) 83, 93, 130, 160, 540, 846
PspPI GGNCC 1 cut(s) 824
PspXI VCTCGAGB 1 cut(s) 354
PsuI RGATCY 2 cut(s) 158, 640
RsaI GTAC 2 cut(s) 83, 251
RsaNI GTAC 2 cut(s) 82, 250
RseI CAYNNNNRTG 1 cut(s) 312
SaqAI TTAA 4 cut(s) 524, 774, 870, 956
SatI GCNGC 1 cut(s) 22
Sau3AI GATC 5 cut(s) 113, 158, 367, 502, 640
Sau96I GGNCC 1 cut(s) 824
SchI GAGTC 2 cut(s) 185, 626
ScrFI CCNGG 2 cut(s) 485, 536
SfaNI GCATC 2 cut(s) 889, 909
Sfr274I CTCGAG 1 cut(s) 354
SlaI CTCGAG 1 cut(s) 354
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
SphI GCATGC 1 cut(s) 398
Sse9I AATT 5 cut(s) 4, 333, 456, 525, 953
SsiI CCGC 1 cut(s) 421
SspI AATATT 1 cut(s) 654
StyD4I CCNGG 2 cut(s) 483, 534
TaaI ACNGT 2 cut(s) 436, 1009
TaqI TCGA 2 cut(s) 355, 370
TasI AATT 5 cut(s) 4, 333, 456, 525, 953
TfiI GAWTC 5 cut(s) 35, 147, 491, 766, 1026
Tru1I TTAA 4 cut(s) 524, 774, 870, 956
Tru9I TTAA 4 cut(s) 524, 774, 870, 956
TscAI CASTG 2 cut(s) 139, 990
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 21
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 5 cut(s) 17, 315, 429, 477, 504
TspRI CASTG 2 cut(s) 139, 990
Van91I CCANNNNNTGG 1 cut(s) 1022
XapI RAATTY 1 cut(s) 4
XceI RCATGY 2 cut(s) 212, 398
XhoI CTCGAG 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.