Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007209.1

Orthogroup ID

OG0016998

Physical Location & Seq

Genomic Coordinates Reverse (-)

39681 .. 40490

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007209.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgaataaaggaataggcgaaaagatgttatcatctgttgagatatcttctgagatatttagcttccttatctgtctggactttgttcctgaaagagggaatatgatcaagtttagatcaggcagtttgacacgcctcaaatcaaacatgccactcaaaatgctcattactaacacaaaagttgggaggaacacagaggccttagttgctggtgttacagagaggacattaaggcatccagatgctatggcttctgtgtttaatgcagttgattctatcagcgcagaattggctaccatcatccaattagaggcccctgatgaaatctctgtaaccgagaaggatgcgaaaatagaagagctgatggaaacgaaccaaggtttgctccaatgcatgggggtcagccatgcttcaatcgaaaccattcttcgaactatactcaaatacaagttggctttcaagttgacaggagctcgtgtgctatcagcaacagttgttgataaagtaactgcagaactggagtcgtgtggattccattgcttaacagcggccattggtggacaaggtgttcaagttttctttggtggttcatcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

198

Amino Acids

21.39

Weight (kDa)

5.96

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016998)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0454481 RchiOBHm_Chr7g0220941
rosa_laevigata	RLG00000002187
rosa_multiflora	Rmu_sc0007209.1_g000007 Rmu_sc0013686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238860
rosa_rugosa	Rorug02G0654700
rosa_samantha	Rh3AG058900 Rh3BG060800 Rh3CG059700 Rh3DG060900 Rh7AG338700 Rh7BG340300 Rh7CG356800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	394
AciI	CCGC	1 cut(s)	548
AcoI	YGGCCR	1 cut(s)	549
AfiI	CCNNNNNNNGG	3 cut(s)	95, 310, 394
AgsI	TTSAA	3 cut(s)	414, 460, 572
AloI	GAACNNNNNNTCC	2 cut(s)	552, 584
AluBI	AGCT	3 cut(s)	63, 361, 473
AluI	AGCT	3 cut(s)	63, 361, 473
Alw21I	GWGCWC	1 cut(s)	475
AoxI	GGCC	3 cut(s)	198, 312, 549
Asp700I	GAANNNNTTC	1 cut(s)	423
AspLEI	GCGC	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	313
AsuII	TTCGAA	1 cut(s)	430
BanII	GRGCYC	1 cut(s)	475
BauI	CACGAG	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	475
BccI	CCATC	2 cut(s)	305, 358
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BclI	TGATCA	1 cut(s)	105
BfmI	CTRYAG	1 cut(s)	510
BisI	GCNGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	550
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	315
BmsI	GCATC	3 cut(s)	232, 244, 334
BpmI	CTGGAG	1 cut(s)	539
Bpu14I	TTCGAA	1 cut(s)	430
BsaJI	CCNNGG	1 cut(s)	376
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 310, 394
Bse1I	ACTGG	1 cut(s)	522
Bse3DI	GCAATG	1 cut(s)	535
BseDI	CCNNGG	1 cut(s)	376
BseGI	GGATG	4 cut(s)	235, 300, 349, 590
BseLI	CCNNNNNNNGG	3 cut(s)	95, 310, 394
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	522
BshFI	GGCC	3 cut(s)	200, 314, 551
BsiHKAI	GWGCWC	1 cut(s)	475
BslI	CCNNNNNNNGG	3 cut(s)	95, 310, 394
BsnI	GGCC	3 cut(s)	200, 314, 551
Bsp119I	TTCGAA	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp143I	GATC	2 cut(s)	105, 116
BspACI	CCGC	1 cut(s)	548
BspANI	GGCC	3 cut(s)	200, 314, 551
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	315
BspMAI	CTGCAG	1 cut(s)	514
BspQI	GCTCTTC	1 cut(s)	351
BspT104I	TTCGAA	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	535
BsrI	ACTGG	1 cut(s)	522
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	2 cut(s)	105, 116
BssSI	CACGAG	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	376
Bst2BI	CACGAG	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	493
Bst6I	CTCTTC	1 cut(s)	351
BstBI	TTCGAA	1 cut(s)	430
BstDEI	CTNAG	2 cut(s)	51, 202
BstENI	CCTNNNNNAGG	1 cut(s)	93
BstF5I	GGATG	4 cut(s)	235, 300, 349, 590
BstHHI	GCGC	1 cut(s)	284
BstKTI	GATC	2 cut(s)	108, 119
BstMBI	GATC	2 cut(s)	105, 116
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 290
BstNSI	RCATGY	1 cut(s)	151
BstSFI	CTRYAG	1 cut(s)	510
BsuRI	GGCC	3 cut(s)	200, 314, 551
BtsCI	GGATG	4 cut(s)	235, 300, 349, 590
CfoI	GCGC	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	313
CviAII	CATG	3 cut(s)	148, 394, 407
DdeI	CTNAG	2 cut(s)	51, 202
DpnI	GATC	2 cut(s)	107, 118
DpnII	GATC	2 cut(s)	105, 116
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Ecl136II	GAGCTC	1 cut(s)	473
Eco130I	CCWWGG	1 cut(s)	376
Eco147I	AGGCCT	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	475
Eco32I	GATATC	1 cut(s)	45
Eco53kI	GAGCTC	1 cut(s)	473
EcoICRI	GAGCTC	1 cut(s)	473
EcoNI	CCTNNNNNAGG	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRV	GATATC	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	376
EcoT22I	ATGCAT	1 cut(s)	395
EcoT38I	GRGCYC	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	3 cut(s)	151, 397, 410
FaiI	YATR	6 cut(s)	104, 149, 248, 395, 408, 437
FatI	CATG	3 cut(s)	147, 393, 406
FbaI	TGATCA	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	549
FokI	GGATG	4 cut(s)	222, 287, 356, 577
FriOI	GRGCYC	1 cut(s)	475
Fsp4HI	GCNGC	1 cut(s)	549
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	1 cut(s)	549
GsuI	CTGGAG	1 cut(s)	539
HaeIII	GGCC	3 cut(s)	200, 314, 551
HhaI	GCGC	1 cut(s)	284
Hin1II	CATG	3 cut(s)	151, 397, 410
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HincII	GTYRAC	1 cut(s)	465
HindII	GTYRAC	1 cut(s)	465
HinfI	GANTC	3 cut(s)	272, 521, 531
Hpy166II	GTNNAC	2 cut(s)	465, 560
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	4 cut(s)	77, 89, 239, 594
Hpy8I	GTNNAC	2 cut(s)	465, 560
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4V	TGCA	3 cut(s)	266, 393, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 290
HpyF3I	CTNAG	2 cut(s)	51, 202
Hsp92II	CATG	3 cut(s)	151, 397, 410
HspAI	GCGC	1 cut(s)	282
Ksp22I	TGATCA	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	105, 116
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	2 cut(s)	390, 470
LpnPI	CCDG	8 cut(s)	62, 102, 105, 195, 252, 330, 453, 503
LweI	GCATC	3 cut(s)	232, 244, 334
MaeIII	GTNAC	3 cut(s)	214, 331, 505
MalI	GATC	2 cut(s)	107, 118
MboI	GATC	2 cut(s)	105, 116
MboII	GAAGA	3 cut(s)	39, 368, 419
MhlI	GDGCHC	1 cut(s)	475
MluCI	AATT	2 cut(s)	287, 305
MlyI	GAGTC	1 cut(s)	530
MnlI	CCTC	6 cut(s)	89, 146, 180, 190, 216, 304
Mph1103I	ATGCAT	1 cut(s)	395
MroXI	GAANNNNTTC	1 cut(s)	423
MseI	TTAA	3 cut(s)	230, 261, 542
MslI	CAYNNNNRTG	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	548
MwoI	GCNNNNNNNGC	2 cut(s)	206, 290
NdeII	GATC	2 cut(s)	105, 116
NlaIII	CATG	3 cut(s)	151, 397, 410
NlaIV	GGNNCC	1 cut(s)	315
NsiI	ATGCAT	1 cut(s)	395
NspI	RCATGY	1 cut(s)	151
NspV	TTCGAA	1 cut(s)	430
PceI	AGGCCT	1 cut(s)	200
PciSI	GCTCTTC	1 cut(s)	351
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	2 cut(s)	272, 531
PflMI	CCANNNNNTGG	1 cut(s)	394
PkrI	GCNGC	1 cut(s)	550
PleI	GAGTC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	529
Psp124BI	GAGCTC	1 cut(s)	475
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	514
RseI	CAYNNNNRTG	1 cut(s)	240
SacI	GAGCTC	1 cut(s)	475
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	3 cut(s)	230, 261, 542
SatI	GCNGC	1 cut(s)	549
Sau3AI	GATC	2 cut(s)	105, 116
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	1 cut(s)	530
SduI	GDGCHC	1 cut(s)	475
SetI	ASST	5 cut(s)	65, 363, 382, 475, 568
SfaNI	GCATC	3 cut(s)	232, 244, 334
SfcI	CTRYAG	1 cut(s)	510
SfuI	TTCGAA	1 cut(s)	430
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	2 cut(s)	287, 305
SseBI	AGGCCT	1 cut(s)	200
SsiI	CCGC	1 cut(s)	548
SstI	GAGCTC	1 cut(s)	475
StuI	AGGCCT	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	1 cut(s)	493
TaqI	TCGA	2 cut(s)	417, 430
TasI	AATT	2 cut(s)	287, 305
TauI	GCSGC	1 cut(s)	551
TfiI	GAWTC	2 cut(s)	272, 531
Tru1I	TTAA	3 cut(s)	230, 261, 542
Tru9I	TTAA	3 cut(s)	230, 261, 542
TspDTI	ATGAA	3 cut(s)	17, 336, 579
Van91I	CCANNNNNTGG	1 cut(s)	394
XagI	CCTNNNNNAGG	1 cut(s)	93
XceI	RCATGY	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	423
Zsp2I	ATGCAT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.