Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0016998

Physical Location & Seq

Genomic Coordinates Forward (+)

4114814 .. 4115587

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG060900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTTATCATCTGTTGGGATATTTAGCTTCCTTATCTGTCTGGACTTTGTTCCTGAAACAGGGAATATGATCAAGTTTAGATCAGGCAGTTTGACACGCCTCAAATCAAACATGCCACTCAAAATGCTCATTACTAACACAAAAGTTGGGAGGAACACAAAGGCCTTAGTTGCTGGTGTTACAGAGAGGACATTAAGGCATGCAGATGCTATGGCTTCTGTGTTTAATGCAGTTGATTCTATCAGCGCAGAATTGGCTACCATCATCCAATTAGAGTCCCCTGATGAAATCTCTGTAACCGAGAAGGATGTGAAAATAGAAGAGCTGATGGAAATGAACCAAGGTTTGCTCCAATGCATGGGGGTCAGCCATGCTTCAATCGAAACCATTCTTCGAACTACACTCAAATACAAGTTGGCTTTCAAGTTGACAGGAGCTCGTGGTGGAGGTTCTGTTCTCACACTATTGCCAACCTTGCTATCAGCAACAGTTGTTGATAAAGTAACTGCAGAACTGGAGTCGTGTGGATTCCATTGCTTCACAGCGGCCATTGGTGGACAAGGTGTTCAAGTTTGCTTTGGTGGTTCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

197

Amino Acids

21.02

Weight (kDa)

6.82

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016998)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0454481 RchiOBHm_Chr7g0220941
rosa_laevigata	RLG00000002187
rosa_multiflora	Rmu_sc0007209.1_g000007 Rmu_sc0013686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238860
rosa_rugosa	Rorug02G0654700
rosa_samantha	Rh3AG058900 Rh3BG060800 Rh3CG059700 Rh3DG060900 Rh7AG338700 Rh7BG340300 Rh7CG356800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	358
AciI	CCGC	1 cut(s)	545
AcoI	YGGCCR	1 cut(s)	546
AfiI	CCNNNNNNNGG	2 cut(s)	59, 358
AgsI	TTSAA	3 cut(s)	378, 424, 569
AloI	GAACNNNNNNTCC	4 cut(s)	438, 470, 549, 581
AluBI	AGCT	3 cut(s)	27, 325, 437
AluI	AGCT	3 cut(s)	27, 325, 437
Alw21I	GWGCWC	1 cut(s)	439
AoxI	GGCC	2 cut(s)	162, 546
Asp700I	GAANNNNTTC	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	248
AsuII	TTCGAA	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	439
BauI	CACGAG	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	439
BccI	CCATC	2 cut(s)	269, 322
BclI	TGATCA	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	507
BisI	GCNGC	1 cut(s)	546
BlsI	GCNGC	1 cut(s)	547
BmsI	GCATC	1 cut(s)	196
BpmI	CTGGAG	1 cut(s)	536
Bpu14I	TTCGAA	1 cut(s)	394
BsaJI	CCNNGG	1 cut(s)	340
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 358
Bse1I	ACTGG	1 cut(s)	519
Bse3DI	GCAATG	1 cut(s)	532
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	3 cut(s)	264, 313, 587
BseLI	CCNNNNNNNGG	2 cut(s)	59, 358
BseMI	GCAATG	1 cut(s)	532
BseNI	ACTGG	1 cut(s)	519
BshFI	GGCC	2 cut(s)	164, 548
BsiHKAI	GWGCWC	1 cut(s)	439
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	2 cut(s)	59, 358
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	2 cut(s)	164, 548
Bsp119I	TTCGAA	1 cut(s)	394
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp143I	GATC	2 cut(s)	69, 80
BspACI	CCGC	1 cut(s)	545
BspANI	GGCC	2 cut(s)	164, 548
BspMAI	CTGCAG	1 cut(s)	511
BspQI	GCTCTTC	1 cut(s)	315
BspT104I	TTCGAA	1 cut(s)	394
BsrDI	GCAATG	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	519
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	2 cut(s)	69, 80
BssSI	CACGAG	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	340
Bst2BI	CACGAG	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	490
Bst6I	CTCTTC	1 cut(s)	315
BstBI	TTCGAA	1 cut(s)	394
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	166
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	3 cut(s)	264, 313, 587
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	2 cut(s)	72, 83
BstMBI	GATC	2 cut(s)	69, 80
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 254, 475
BstNSI	RCATGY	2 cut(s)	115, 203
BstSFI	CTRYAG	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	164, 548
BtsCI	GGATG	3 cut(s)	264, 313, 587
Cac8I	GCNNGC	1 cut(s)	201
CfoI	GCGC	1 cut(s)	248
CviAII	CATG	4 cut(s)	112, 200, 358, 371
CviJI	RGCY	9 cut(s)	27, 164, 215, 257, 325, 369, 419, 437, 548
CviKI_1	RGCY	9 cut(s)	27, 164, 215, 257, 325, 369, 419, 437, 548
DdeI	CTNAG	1 cut(s)	166
DpnI	GATC	2 cut(s)	71, 82
DpnII	GATC	2 cut(s)	69, 80
EaeI	YGGCCR	1 cut(s)	546
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Ecl136II	GAGCTC	1 cut(s)	437
Eco130I	CCWWGG	1 cut(s)	340
Eco147I	AGGCCT	1 cut(s)	164
Eco24I	GRGCYC	1 cut(s)	439
Eco53kI	GAGCTC	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	437
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	340
EcoT22I	ATGCAT	1 cut(s)	359
EcoT38I	GRGCYC	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	4 cut(s)	115, 203, 361, 374
FaiI	YATR	6 cut(s)	68, 113, 201, 212, 359, 372
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	4 cut(s)	111, 199, 357, 370
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	546
FokI	GGATG	3 cut(s)	251, 320, 574
FriOI	GRGCYC	1 cut(s)	439
Fsp4HI	GCNGC	1 cut(s)	546
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	1 cut(s)	546
GsuI	CTGGAG	1 cut(s)	536
HaeIII	GGCC	2 cut(s)	164, 548
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	4 cut(s)	115, 203, 361, 374
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HinfI	GANTC	4 cut(s)	236, 275, 518, 528
Hpy166II	GTNNAC	2 cut(s)	429, 557
Hpy188III	TCNNGA	3 cut(s)	41, 53, 591
Hpy8I	GTNNAC	2 cut(s)	429, 557
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4V	TGCA	4 cut(s)	203, 230, 357, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 254, 475
HpyF3I	CTNAG	1 cut(s)	166
Hsp92II	CATG	4 cut(s)	115, 203, 361, 374
HspAI	GCGC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	69, 80
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	2 cut(s)	354, 434
LpnPI	CCDG	8 cut(s)	26, 45, 66, 69, 159, 294, 417, 500
LweI	GCATC	1 cut(s)	196
MaeIII	GTNAC	3 cut(s)	178, 295, 502
MalI	GATC	2 cut(s)	71, 82
MboI	GATC	2 cut(s)	69, 80
MboII	GAAGA	2 cut(s)	332, 383
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	2 cut(s)	251, 269
MlyI	GAGTC	2 cut(s)	284, 527
MnlI	CCTC	4 cut(s)	110, 144, 180, 440
Mph1103I	ATGCAT	1 cut(s)	359
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	2 cut(s)	194, 225
MslI	CAYNNNNRTG	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	545
MwoI	GCNNNNNNNGC	3 cut(s)	170, 254, 475
NdeII	GATC	2 cut(s)	69, 80
NlaIII	CATG	4 cut(s)	115, 203, 361, 374
NsiI	ATGCAT	1 cut(s)	359
NspI	RCATGY	2 cut(s)	115, 203
NspV	TTCGAA	1 cut(s)	394
PaeI	GCATGC	1 cut(s)	203
PceI	AGGCCT	1 cut(s)	164
PciSI	GCTCTTC	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	236, 528
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	1 cut(s)	547
PleI	GAGTC	2 cut(s)	283, 526
PpsI	GAGTC	2 cut(s)	283, 526
Psp124BI	GAGCTC	1 cut(s)	439
PstI	CTGCAG	1 cut(s)	511
RseI	CAYNNNNRTG	1 cut(s)	204
SacI	GAGCTC	1 cut(s)	439
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	194, 225
SatI	GCNGC	1 cut(s)	546
Sau3AI	GATC	2 cut(s)	69, 80
SchI	GAGTC	2 cut(s)	284, 527
SduI	GDGCHC	1 cut(s)	439
SetI	ASST	7 cut(s)	29, 327, 346, 439, 451, 476, 565
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	507
SfuI	TTCGAA	1 cut(s)	394
SmiMI	CAYNNNNRTG	1 cut(s)	204
SphI	GCATGC	1 cut(s)	203
Sse9I	AATT	2 cut(s)	251, 269
SseBI	AGGCCT	1 cut(s)	164
SsiI	CCGC	1 cut(s)	545
SstI	GAGCTC	1 cut(s)	439
StuI	AGGCCT	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	1 cut(s)	490
TaqI	TCGA	2 cut(s)	381, 394
TasI	AATT	2 cut(s)	251, 269
TauI	GCSGC	1 cut(s)	548
TfiI	GAWTC	2 cut(s)	236, 528
Tru1I	TTAA	2 cut(s)	194, 225
Tru9I	TTAA	2 cut(s)	194, 225
TspDTI	ATGAA	3 cut(s)	300, 350, 576
Van91I	CCANNNNNTGG	1 cut(s)	358
XagI	CCTNNNNNAGG	1 cut(s)	57
XceI	RCATGY	2 cut(s)	115, 203
XmnI	GAANNNNTTC	1 cut(s)	387
Zsp2I	ATGCAT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.