Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0016998

Physical Location & Seq

Genomic Coordinates Forward (+)

35558817 .. 35559374

Gene Structure 558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG340300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCTTCTGTGTTTAATGCAGTTGATTCTATCAGCGCGGAATTGGCTACCATTATCCAATCAGAGGCCCCTGATGAAATCTCTGTAATTGAGAAGGAGGCGAACATAGAAGAGCTGATGGAAATGAACCAAGGTTTGCTCCAATGCATGGGGTTCAGCCATTCTTCAATCATTCTTCGTACTACACTCAAATACAAGTTGGCTTCCAAGTTGACAGGAGCTGGTGGTGGAGGTTGTGTTCTCACACTATTGCCAACCTCAACAGTTGTTGATAAAGTAACTGCAGAACTGGAGTCGTGTGGATTCCATTGCTTAACAGCGGCCATTGGTGGACAAGGTGTTCAAGTTTGCTTTGGTGGTTCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

122

Amino Acids

12.64

Weight (kDa)

4.57

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_C	PF08544	56 - 99	8.6e-06	GHMP kinases C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0016998)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0454481 RchiOBHm_Chr7g0220941
rosa_laevigata	RLG00000002187
rosa_multiflora	Rmu_sc0007209.1_g000007 Rmu_sc0013686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238860
rosa_rugosa	Rorug02G0654700
rosa_samantha	Rh3AG058900 Rh3BG060800 Rh3CG059700 Rh3DG060900 Rh7AG338700 Rh7BG340300 Rh7CG356800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	148
AccII	CGCG	1 cut(s)	38
AciI	CCGC	2 cut(s)	38, 320
AcoI	YGGCCR	1 cut(s)	321
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	2 cut(s)	64, 148
AgsI	TTSAA	2 cut(s)	168, 344
AloI	GAACNNNNNNTCC	4 cut(s)	222, 254, 324, 356
AluBI	AGCT	2 cut(s)	115, 221
AluI	AGCT	2 cut(s)	115, 221
AlwNI	CAGNNNCTG	1 cut(s)	221
AoxI	GGCC	2 cut(s)	66, 321
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	67
BccI	CCATC	1 cut(s)	112
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 148
Bse1I	ACTGG	1 cut(s)	294
Bse3DI	GCAATG	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	1 cut(s)	362
BseLI	CCNNNNNNNGG	2 cut(s)	64, 148
BseMI	GCAATG	1 cut(s)	307
BseNI	ACTGG	1 cut(s)	294
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	68, 323
BslI	CCNNNNNNNGG	2 cut(s)	64, 148
BsnI	GGCC	2 cut(s)	68, 323
BspACI	CCGC	2 cut(s)	38, 320
BspANI	GGCC	2 cut(s)	68, 323
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	69
BspMAI	CTGCAG	1 cut(s)	286
BspQI	GCTCTTC	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	294
BssECI	CCNNGG	1 cut(s)	130
BssT1I	CCWWGG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	362
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstSFI	CTRYAG	1 cut(s)	282
BstUI	CGCG	1 cut(s)	38
BsuRI	GGCC	2 cut(s)	68, 323
BtsCI	GGATG	1 cut(s)	362
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	8 cut(s)	5, 47, 68, 115, 159, 203, 221, 323
CviKI_1	RGCY	8 cut(s)	5, 47, 68, 115, 159, 203, 221, 323
CviQI	GTAC	1 cut(s)	180
EaeI	YGGCCR	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	1 cut(s)	151
FaiI	YATR	2 cut(s)	107, 149
FatI	CATG	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	1 cut(s)	349
Fsp4HI	GCNGC	1 cut(s)	321
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	1 cut(s)	321
GsuI	CTGGAG	1 cut(s)	311
HaeIII	GGCC	2 cut(s)	68, 323
HhaI	GCGC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	3 cut(s)	26, 293, 303
Hpy166II	GTNNAC	2 cut(s)	213, 332
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	366
Hpy8I	GTNNAC	2 cut(s)	213, 332
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4V	TGCA	3 cut(s)	20, 147, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	1 cut(s)	36
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	2 cut(s)	144, 218
LpnPI	CCDG	4 cut(s)	84, 201, 207, 275
MaeIII	GTNAC	1 cut(s)	277
MboII	GAAGA	3 cut(s)	122, 156, 167
MluCI	AATT	2 cut(s)	41, 87
MlyI	GAGTC	1 cut(s)	302
MnlI	CCTC	4 cut(s)	58, 91, 224, 268
Mph1103I	ATGCAT	1 cut(s)	149
MseI	TTAA	2 cut(s)	15, 314
MspA1I	CMGCKG	1 cut(s)	320
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	1 cut(s)	69
NsiI	ATGCAT	1 cut(s)	149
PciSI	GCTCTTC	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	26, 303
PflMI	CCANNNNNTGG	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	286
PstNI	CAGNNNCTG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	15, 314
SatI	GCNGC	1 cut(s)	321
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	302
SetI	ASST	6 cut(s)	117, 136, 223, 235, 260, 340
SfcI	CTRYAG	1 cut(s)	282
Sse9I	AATT	2 cut(s)	41, 87
SsiI	CCGC	2 cut(s)	38, 320
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	265
TasI	AATT	2 cut(s)	41, 87
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	2 cut(s)	26, 303
Tru1I	TTAA	2 cut(s)	15, 314
Tru9I	TTAA	2 cut(s)	15, 314
TspDTI	ATGAA	3 cut(s)	90, 140, 351
Van91I	CCANNNNNTGG	1 cut(s)	148
Zsp2I	ATGCAT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.