Mevalonate
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0454481 RchiOBHm_Chr7g0220941 |
| rosa_laevigata | RLG00000002187 |
| rosa_multiflora | Rmu_sc0007209.1_g000007 Rmu_sc0013686.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00238860 |
| rosa_rugosa | Rorug02G0654700 |
| rosa_samantha | Rh3AG058900 Rh3BG060800 Rh3CG059700 Rh3DG060900 Rh7AG338700 Rh7BG340300 Rh7CG356800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 394 |
| AciI | CCGC | 1 cut(s) | 575 |
| AcoI | YGGCCR | 1 cut(s) | 576 |
| AcsI | RAATTY | 1 cut(s) | 420 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 95, 394 |
| AgsI | TTSAA | 3 cut(s) | 414, 454, 599 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 468, 500, 579, 611 |
| AluBI | AGCT | 3 cut(s) | 63, 361, 467 |
| AluI | AGCT | 3 cut(s) | 63, 361, 467 |
| Alw21I | GWGCWC | 1 cut(s) | 469 |
| Alw26I | GTCTC | 1 cut(s) | 305 |
| AoxI | GGCC | 1 cut(s) | 576 |
| ApoI | RAATTY | 1 cut(s) | 420 |
| AsuII | TTCGAA | 1 cut(s) | 424 |
| BanII | GRGCYC | 1 cut(s) | 469 |
| BauI | CACGAG | 1 cut(s) | 468 |
| Bbv12I | GWGCWC | 1 cut(s) | 469 |
| BccI | CCATC | 2 cut(s) | 305, 358 |
| BceAI | ACGGC | 1 cut(s) | 264 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 326, 360 |
| BclI | TGATCA | 1 cut(s) | 105 |
| BcoDI | GTCTC | 1 cut(s) | 305 |
| BfmI | CTRYAG | 1 cut(s) | 537 |
| BisI | GCNGC | 1 cut(s) | 576 |
| BlsI | GCNGC | 1 cut(s) | 577 |
| BmsI | GCATC | 3 cut(s) | 232, 244, 334 |
| BpmI | CTGGAG | 1 cut(s) | 566 |
| Bpu14I | TTCGAA | 1 cut(s) | 424 |
| BsaI | GGTCTC | 1 cut(s) | 305 |
| BsaJI | CCNNGG | 1 cut(s) | 376 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 468, 498 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 95, 394 |
| Bse1I | ACTGG | 1 cut(s) | 549 |
| Bse3DI | GCAATG | 1 cut(s) | 562 |
| BseDI | CCNNGG | 1 cut(s) | 376 |
| BseGI | GGATG | 4 cut(s) | 235, 300, 349, 617 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 95, 394 |
| BseMI | GCAATG | 1 cut(s) | 562 |
| BseNI | ACTGG | 1 cut(s) | 549 |
| BshFI | GGCC | 1 cut(s) | 578 |
| BsiHKAI | GWGCWC | 1 cut(s) | 469 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 95, 394 |
| BsmAI | GTCTC | 1 cut(s) | 305 |
| BsnI | GGCC | 1 cut(s) | 578 |
| Bso31I | GGTCTC | 1 cut(s) | 305 |
| Bsp119I | TTCGAA | 1 cut(s) | 424 |
| Bsp1286I | GDGCHC | 1 cut(s) | 469 |
| Bsp143I | GATC | 2 cut(s) | 105, 116 |
| BspACI | CCGC | 1 cut(s) | 575 |
| BspANI | GGCC | 1 cut(s) | 578 |
| BspHI | TCATGA | 1 cut(s) | 165 |
| BspMAI | CTGCAG | 1 cut(s) | 541 |
| BspQI | GCTCTTC | 1 cut(s) | 351 |
| BspT104I | TTCGAA | 1 cut(s) | 424 |
| BspTNI | GGTCTC | 1 cut(s) | 305 |
| BsrDI | GCAATG | 1 cut(s) | 562 |
| BsrI | ACTGG | 1 cut(s) | 549 |
| BssECI | CCNNGG | 1 cut(s) | 376 |
| BssMI | GATC | 2 cut(s) | 105, 116 |
| BssSI | CACGAG | 1 cut(s) | 468 |
| BssT1I | CCWWGG | 1 cut(s) | 376 |
| Bst2BI | CACGAG | 1 cut(s) | 468 |
| Bst4CI | ACNGT | 1 cut(s) | 520 |
| Bst6I | CTCTTC | 1 cut(s) | 351 |
| BstBI | TTCGAA | 1 cut(s) | 424 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 93 |
| BstF5I | GGATG | 4 cut(s) | 235, 300, 349, 617 |
| BstKTI | GATC | 2 cut(s) | 108, 119 |
| BstMAI | GTCTC | 1 cut(s) | 305 |
| BstMBI | GATC | 2 cut(s) | 105, 116 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 206, 505 |
| BstNSI | RCATGY | 1 cut(s) | 151 |
| BstSFI | CTRYAG | 1 cut(s) | 537 |
| BsuRI | GGCC | 1 cut(s) | 578 |
| BtsCI | GGATG | 4 cut(s) | 235, 300, 349, 617 |
| CciI | TCATGA | 1 cut(s) | 165 |
| CviAII | CATG | 4 cut(s) | 148, 166, 394, 407 |
| CviJI | RGCY | 9 cut(s) | 63, 200, 251, 293, 361, 405, 449, 467, 578 |
| CviKI_1 | RGCY | 9 cut(s) | 63, 200, 251, 293, 361, 405, 449, 467, 578 |
| DpnI | GATC | 2 cut(s) | 107, 118 |
| DpnII | GATC | 2 cut(s) | 105, 116 |
| EaeI | YGGCCR | 1 cut(s) | 576 |
| Eam1104I | CTCTTC | 1 cut(s) | 351 |
| EarI | CTCTTC | 1 cut(s) | 351 |
| Ecl136II | GAGCTC | 1 cut(s) | 467 |
| Eco130I | CCWWGG | 1 cut(s) | 376 |
| Eco24I | GRGCYC | 1 cut(s) | 469 |
| Eco31I | GGTCTC | 1 cut(s) | 305 |
| Eco32I | GATATC | 1 cut(s) | 45 |
| Eco53kI | GAGCTC | 1 cut(s) | 467 |
| EcoICRI | GAGCTC | 1 cut(s) | 467 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 93 |
| EcoRV | GATATC | 1 cut(s) | 45 |
| EcoT14I | CCWWGG | 1 cut(s) | 376 |
| EcoT22I | ATGCAT | 1 cut(s) | 395 |
| EcoT38I | GRGCYC | 1 cut(s) | 469 |
| ErhI | CCWWGG | 1 cut(s) | 376 |
| FaeI | CATG | 4 cut(s) | 151, 169, 397, 410 |
| FaiI | YATR | 5 cut(s) | 104, 149, 167, 395, 408 |
| FatI | CATG | 4 cut(s) | 147, 165, 393, 406 |
| FbaI | TGATCA | 1 cut(s) | 105 |
| Fnu4HI | GCNGC | 1 cut(s) | 576 |
| FokI | GGATG | 4 cut(s) | 222, 287, 356, 604 |
| FriOI | GRGCYC | 1 cut(s) | 469 |
| Fsp4HI | GCNGC | 1 cut(s) | 576 |
| GluI | GCNGC | 1 cut(s) | 576 |
| GsuI | CTGGAG | 1 cut(s) | 566 |
| HaeIII | GGCC | 1 cut(s) | 578 |
| Hin1II | CATG | 4 cut(s) | 151, 169, 397, 410 |
| HincII | GTYRAC | 1 cut(s) | 459 |
| HindII | GTYRAC | 1 cut(s) | 459 |
| HinfI | GANTC | 3 cut(s) | 272, 548, 558 |
| Hpy166II | GTNNAC | 2 cut(s) | 459, 587 |
| Hpy188III | TCNNGA | 5 cut(s) | 77, 89, 166, 239, 621 |
| Hpy8I | GTNNAC | 2 cut(s) | 459, 587 |
| HpyAV | CCTTC | 2 cut(s) | 190, 334 |
| HpyCH4III | ACNGT | 1 cut(s) | 520 |
| HpyCH4V | TGCA | 4 cut(s) | 266, 332, 393, 539 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 206, 505 |
| Hsp92II | CATG | 4 cut(s) | 151, 169, 397, 410 |
| Ksp22I | TGATCA | 1 cut(s) | 105 |
| Kzo9I | GATC | 2 cut(s) | 105, 116 |
| LguI | GCTCTTC | 1 cut(s) | 351 |
| LmnI | GCTCC | 2 cut(s) | 390, 464 |
| LpnPI | CCDG | 8 cut(s) | 62, 81, 102, 195, 252, 330, 447, 530 |
| LweI | GCATC | 3 cut(s) | 232, 244, 334 |
| MaeIII | GTNAC | 2 cut(s) | 214, 532 |
| MalI | GATC | 2 cut(s) | 107, 118 |
| MboI | GATC | 2 cut(s) | 105, 116 |
| MboII | GAAGA | 2 cut(s) | 368, 598 |
| MhlI | GDGCHC | 1 cut(s) | 469 |
| MluCI | AATT | 3 cut(s) | 287, 305, 420 |
| MlyI | GAGTC | 1 cut(s) | 557 |
| MnlI | CCTC | 4 cut(s) | 146, 180, 216, 470 |
| Mph1103I | ATGCAT | 1 cut(s) | 395 |
| MseI | TTAA | 3 cut(s) | 230, 261, 569 |
| MslI | CAYNNNNRTG | 1 cut(s) | 240 |
| MspA1I | CMGCKG | 1 cut(s) | 575 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 206, 505 |
| NdeII | GATC | 2 cut(s) | 105, 116 |
| NlaIII | CATG | 4 cut(s) | 151, 169, 397, 410 |
| NsiI | ATGCAT | 1 cut(s) | 395 |
| NspI | RCATGY | 1 cut(s) | 151 |
| NspV | TTCGAA | 1 cut(s) | 424 |
| PagI | TCATGA | 1 cut(s) | 165 |
| PciSI | GCTCTTC | 1 cut(s) | 351 |
| PfeI | GAWTC | 2 cut(s) | 272, 558 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 394 |
| PkrI | GCNGC | 1 cut(s) | 577 |
| PleI | GAGTC | 1 cut(s) | 556 |
| PpsI | GAGTC | 1 cut(s) | 556 |
| Psp124BI | GAGCTC | 1 cut(s) | 469 |
| PstI | CTGCAG | 1 cut(s) | 541 |
| RseI | CAYNNNNRTG | 1 cut(s) | 240 |
| SacI | GAGCTC | 1 cut(s) | 469 |
| SapI | GCTCTTC | 1 cut(s) | 351 |
| SaqAI | TTAA | 3 cut(s) | 230, 261, 569 |
| SatI | GCNGC | 1 cut(s) | 576 |
| Sau3AI | GATC | 2 cut(s) | 105, 116 |
| SchI | GAGTC | 1 cut(s) | 557 |
| SduI | GDGCHC | 1 cut(s) | 469 |
| SetI | ASST | 7 cut(s) | 65, 363, 382, 469, 481, 506, 595 |
| SfaNI | GCATC | 3 cut(s) | 232, 244, 334 |
| SfcI | CTRYAG | 1 cut(s) | 537 |
| SfuI | TTCGAA | 1 cut(s) | 424 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 240 |
| Sse9I | AATT | 3 cut(s) | 287, 305, 420 |
| SsiI | CCGC | 1 cut(s) | 575 |
| SstI | GAGCTC | 1 cut(s) | 469 |
| StyI | CCWWGG | 1 cut(s) | 376 |
| TaaI | ACNGT | 1 cut(s) | 520 |
| TaqI | TCGA | 3 cut(s) | 143, 417, 424 |
| TasI | AATT | 3 cut(s) | 287, 305, 420 |
| TauI | GCSGC | 1 cut(s) | 578 |
| TfiI | GAWTC | 2 cut(s) | 272, 558 |
| Tru1I | TTAA | 3 cut(s) | 230, 261, 569 |
| Tru9I | TTAA | 3 cut(s) | 230, 261, 569 |
| TspDTI | ATGAA | 4 cut(s) | 17, 336, 386, 606 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 394 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 93 |
| XapI | RAATTY | 1 cut(s) | 420 |
| XceI | RCATGY | 1 cut(s) | 151 |
| Zsp2I | ATGCAT | 1 cut(s) | 395 |