Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0016998

Physical Location & Seq

Genomic Coordinates Forward (+)

4123781 .. 4125713

Gene Structure 1933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG058900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGATCAAGTTTAGATCAGTCAGTTTGACACGCCTCAAATCGAACATGCCACTCAAAATGCTCATGACTAACACAAAAGTTGGGAGGAACACGAAGGCTTTAGTTGCTGGTGTTACAGAGAGGACATTAAGGCATCCAGATGCTACGGCTTCTGTGTTTAATGCAGTTGATTCTATCAGCGTGGAATTGGCTACCATCATCCAATTAGAGACCCCTGATGAAATCTCTGCAACCGAGAAGGATGCGAAAATAGAAGAGCTGATGGAAATGAACCAAGGTTTGCTCCAATGCATGGGGTTCAGCCATGCTTCAATCGAAATTCGAACTACACTCAAATACAAGTTGGCTTTCAAGTTGACAGGAGCTCGTGGTGGAGGTTCTGTTCTCACACTATTGCCAACCTTGCTATCAGCAACAGTTGTTGATAAAGTAACTGCAGAACTGGAGTCGTGTGGATTCCATTGCTTAACAGCGGCCATTGGTGGACAAGGTGTTCAAGTTTTCTTCGGTGGTTCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

173

Amino Acids

18.54

Weight (kDa)

8.48

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016998)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0454481 RchiOBHm_Chr7g0220941
rosa_laevigata	RLG00000002187
rosa_multiflora	Rmu_sc0007209.1_g000007 Rmu_sc0013686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238860
rosa_rugosa	Rorug02G0654700
rosa_samantha	Rh3AG058900 Rh3BG060800 Rh3CG059700 Rh3DG060900 Rh7AG338700 Rh7BG340300 Rh7CG356800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	292
AciI	CCGC	1 cut(s)	473
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	3 cut(s)	312, 352, 497
AloI	GAACNNNNNNTCC	4 cut(s)	366, 398, 477, 509
AluBI	AGCT	2 cut(s)	259, 365
AluI	AGCT	2 cut(s)	259, 365
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	1 cut(s)	203
AoxI	GGCC	1 cut(s)	474
ApoI	RAATTY	1 cut(s)	318
AsuII	TTCGAA	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	367
BauI	CACGAG	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	367
BccI	CCATC	2 cut(s)	203, 256
BceAI	ACGGC	1 cut(s)	162
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	435
BisI	GCNGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	475
BmsI	GCATC	3 cut(s)	130, 142, 232
BpmI	CTGGAG	1 cut(s)	464
Bpu14I	TTCGAA	1 cut(s)	322
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	447
Bse3DI	GCAATG	1 cut(s)	460
BseDI	CCNNGG	1 cut(s)	274
BseGI	GGATG	4 cut(s)	133, 198, 247, 515
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMI	GCAATG	1 cut(s)	460
BseNI	ACTGG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	476
BsiHKAI	GWGCWC	1 cut(s)	367
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	476
Bso31I	GGTCTC	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	3, 14
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	1 cut(s)	476
BspHI	TCATGA	1 cut(s)	63
BspMAI	CTGCAG	1 cut(s)	439
BspQI	GCTCTTC	1 cut(s)	249
BspT104I	TTCGAA	1 cut(s)	322
BspTNI	GGTCTC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	447
BssECI	CCNNGG	1 cut(s)	274
BssMI	GATC	2 cut(s)	3, 14
BssSI	CACGAG	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	274
Bst2BI	CACGAG	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	418
Bst6I	CTCTTC	1 cut(s)	249
BstBI	TTCGAA	1 cut(s)	322
BstF5I	GGATG	4 cut(s)	133, 198, 247, 515
BstKTI	GATC	2 cut(s)	6, 17
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	2 cut(s)	3, 14
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 403
BstNSI	RCATGY	1 cut(s)	49
BstSFI	CTRYAG	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	476
BtsCI	GGATG	4 cut(s)	133, 198, 247, 515
CciI	TCATGA	1 cut(s)	63
CviAII	CATG	4 cut(s)	46, 64, 292, 305
CviJI	RGCY	8 cut(s)	98, 149, 191, 259, 303, 347, 365, 476
CviKI_1	RGCY	8 cut(s)	98, 149, 191, 259, 303, 347, 365, 476
DpnI	GATC	2 cut(s)	5, 16
DpnII	GATC	2 cut(s)	3, 14
EaeI	YGGCCR	1 cut(s)	474
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Ecl136II	GAGCTC	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	367
Eco31I	GGTCTC	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	365
EcoICRI	GAGCTC	1 cut(s)	365
EcoT14I	CCWWGG	1 cut(s)	274
EcoT22I	ATGCAT	1 cut(s)	293
EcoT38I	GRGCYC	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	274
FaeI	CATG	4 cut(s)	49, 67, 295, 308
FaiI	YATR	4 cut(s)	47, 65, 293, 306
FatI	CATG	4 cut(s)	45, 63, 291, 304
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	474
FokI	GGATG	4 cut(s)	120, 185, 254, 502
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	1 cut(s)	474
GluI	GCNGC	1 cut(s)	474
GsuI	CTGGAG	1 cut(s)	464
HaeIII	GGCC	1 cut(s)	476
Hin1II	CATG	4 cut(s)	49, 67, 295, 308
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HinfI	GANTC	3 cut(s)	170, 446, 456
Hpy166II	GTNNAC	2 cut(s)	357, 485
Hpy188III	TCNNGA	3 cut(s)	64, 137, 519
Hpy8I	GTNNAC	2 cut(s)	357, 485
HpyAV	CCTTC	2 cut(s)	88, 232
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4V	TGCA	4 cut(s)	164, 230, 291, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 403
Hsp92II	CATG	4 cut(s)	49, 67, 295, 308
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 14
LguI	GCTCTTC	1 cut(s)	249
LmnI	GCTCC	2 cut(s)	288, 362
LpnPI	CCDG	5 cut(s)	93, 150, 228, 345, 428
LweI	GCATC	3 cut(s)	130, 142, 232
MaeIII	GTNAC	2 cut(s)	112, 430
MalI	GATC	2 cut(s)	5, 16
MboI	GATC	2 cut(s)	3, 14
MboII	GAAGA	2 cut(s)	266, 496
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	3 cut(s)	185, 203, 318
MlyI	GAGTC	1 cut(s)	455
MnlI	CCTC	4 cut(s)	44, 78, 114, 368
Mph1103I	ATGCAT	1 cut(s)	293
MseI	TTAA	3 cut(s)	128, 159, 467
MslI	CAYNNNNRTG	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	473
MwoI	GCNNNNNNNGC	2 cut(s)	104, 403
NdeII	GATC	2 cut(s)	3, 14
NlaIII	CATG	4 cut(s)	49, 67, 295, 308
NsiI	ATGCAT	1 cut(s)	293
NspI	RCATGY	1 cut(s)	49
NspV	TTCGAA	1 cut(s)	322
PagI	TCATGA	1 cut(s)	63
PciSI	GCTCTTC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	170, 456
PflMI	CCANNNNNTGG	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	475
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
Psp124BI	GAGCTC	1 cut(s)	367
PstI	CTGCAG	1 cut(s)	439
RseI	CAYNNNNRTG	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	367
SapI	GCTCTTC	1 cut(s)	249
SaqAI	TTAA	3 cut(s)	128, 159, 467
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	2 cut(s)	3, 14
SchI	GAGTC	1 cut(s)	455
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	6 cut(s)	261, 280, 367, 379, 404, 493
SfaNI	GCATC	3 cut(s)	130, 142, 232
SfcI	CTRYAG	1 cut(s)	435
SfuI	TTCGAA	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	138
Sse9I	AATT	3 cut(s)	185, 203, 318
SsiI	CCGC	1 cut(s)	473
SstI	GAGCTC	1 cut(s)	367
StyI	CCWWGG	1 cut(s)	274
TaaI	ACNGT	1 cut(s)	418
TaqI	TCGA	3 cut(s)	41, 315, 322
TasI	AATT	3 cut(s)	185, 203, 318
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	2 cut(s)	170, 456
Tru1I	TTAA	3 cut(s)	128, 159, 467
Tru9I	TTAA	3 cut(s)	128, 159, 467
TspDTI	ATGAA	3 cut(s)	234, 284, 504
Van91I	CCANNNNNTGG	1 cut(s)	292
XapI	RAATTY	1 cut(s)	318
XceI	RCATGY	1 cut(s)	49
Zsp2I	ATGCAT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.