Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0016998

Physical Location & Seq

Genomic Coordinates Reverse (-)

27247753 .. 27248598

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00238860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCTTCTGTGTTTAATGCAGTTGATTCTATTGGCGCGGAATTGGCTACCATTATCCAATCAGAGGCCCCTGATGAAATCTCTGTAACTGAGAAGGAGGCGAAAATAGAAGAGCTGATGGAAATGAACCAAGGCTTGCTCCAATGCACGGGGGTCAGCCATGCTTCAATCATTCTGCGAACTACACCCAAATACAAGTTGGCTTCCAAGTTGACAGGATCTGGTGGTGGAGGTTGTGTTCTCACACTATTGCCAACCTTGCTATCAGCAACAGTTGTTGATAAAGTAACTGCAGAACTGGAGTCGTGTGGATTCCATTGCTCAACAGCGGCCATTGGTGGACAAGGTGTTCAAGTTTGCTTTGGGTTCATCCTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

126

Amino Acids

13.06

Weight (kDa)

4.88

Isoelectric Point (pI)

34.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016998)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0454481 RchiOBHm_Chr7g0220941
rosa_laevigata	RLG00000002187
rosa_multiflora	Rmu_sc0007209.1_g000007 Rmu_sc0013686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238860
rosa_rugosa	Rorug02G0654700
rosa_samantha	Rh3AG058900 Rh3BG060800 Rh3CG059700 Rh3DG060900 Rh7AG338700 Rh7BG340300 Rh7CG356800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	38
AciI	CCGC	2 cut(s)	38, 329
AclWI	GGATC	1 cut(s)	226
AcoI	YGGCCR	1 cut(s)	330
AfiI	CCNNNNNNNGG	2 cut(s)	64, 148
AgsI	TTSAA	2 cut(s)	168, 353
AloI	GAACNNNNNNTCC	4 cut(s)	222, 254, 333, 365
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
AlwI	GGATC	1 cut(s)	226
AlwNI	CAGNNNCTG	1 cut(s)	221
AoxI	GGCC	2 cut(s)	66, 330
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	67
BccI	CCATC	1 cut(s)	112
BfmI	CTRYAG	1 cut(s)	291
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 148
Bse1I	ACTGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	64, 148
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	68, 332
BslI	CCNNNNNNNGG	2 cut(s)	64, 148
BsnI	GGCC	2 cut(s)	68, 332
Bsp143I	GATC	1 cut(s)	218
BspACI	CCGC	2 cut(s)	38, 329
BspANI	GGCC	2 cut(s)	68, 332
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	69
BspMAI	CTGCAG	1 cut(s)	295
BspPI	GGATC	1 cut(s)	226
BspQI	GCTCTTC	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	369
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	1 cut(s)	221
BstMBI	GATC	1 cut(s)	218
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 259
BstSFI	CTRYAG	1 cut(s)	291
BstUI	CGCG	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	68, 332
BtsCI	GGATG	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	137
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	67
CviAII	CATG	1 cut(s)	161
CviJI	RGCY	8 cut(s)	5, 47, 68, 115, 135, 159, 203, 332
CviKI_1	RGCY	8 cut(s)	5, 47, 68, 115, 135, 159, 203, 332
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	1 cut(s)	220
DpnII	GATC	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	1 cut(s)	164
FaiI	YATR	1 cut(s)	162
FatI	CATG	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	1 cut(s)	330
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	320
HaeIII	GGCC	2 cut(s)	68, 332
HhaI	GCGC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	164
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	3 cut(s)	26, 302, 312
Hpy166II	GTNNAC	2 cut(s)	213, 341
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	373
Hpy8I	GTNNAC	2 cut(s)	213, 341
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	3 cut(s)	20, 147, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 259
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	164
HspAI	GCGC	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	218
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	1 cut(s)	144
LpnPI	CCDG	4 cut(s)	84, 201, 207, 284
MaeIII	GTNAC	2 cut(s)	85, 286
MalI	GATC	1 cut(s)	220
MboI	GATC	1 cut(s)	218
MboII	GAAGA	1 cut(s)	122
MflI	RGATCY	1 cut(s)	218
MluCI	AATT	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	3 cut(s)	58, 91, 224
MseI	TTAA	1 cut(s)	15
MspA1I	CMGCKG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	44, 259
NdeII	GATC	1 cut(s)	218
NlaIII	CATG	1 cut(s)	164
NlaIV	GGNNCC	1 cut(s)	69
PciSI	GCTCTTC	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	26, 312
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	218
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	1 cut(s)	218
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	311
SetI	ASST	4 cut(s)	117, 235, 260, 349
SfcI	CTRYAG	1 cut(s)	291
Sse9I	AATT	1 cut(s)	41
SsiI	CCGC	2 cut(s)	38, 329
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	274
TasI	AATT	1 cut(s)	41
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	2 cut(s)	26, 312
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TspDTI	ATGAA	3 cut(s)	90, 140, 358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.