Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001680

Physical Location & Seq

Genomic Coordinates Forward (+)

76172690 .. 76187689

Gene Structure 15000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0654700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3027 bp

ATGGAATTGCAAATGAAGGTGGCGCAGGCAGTTCACGTCCTGAATCACGATACAGAGTCGTGCAACCGCGTGGCAGCTAATCAGTGGCTGGTTCAGTTTCAGCAGACTGACGCCGCTTGGGCCGTCGCCACCTCCATCCTCACCTCCGATTTTCACCATTCTTTCGGCTCCAATTACGAGGTCGAGTTCTTTGCTGCCCAGATTCTTAAACGAAAGATCCAAAATGATGGCAGTTACCTGCAGCCGGGAGCTAAAGATGCTTTGCTAAATGCCCTTCTTCTGGCTGCCAAAAGATTTAGTTCAGGCCCTCACCAGCTTTTAACCCAAATCTGCCTTGCACTCTCTGCACTTTTACTGCGCGCTGTTGAGCATGGAAAACCTGTTGAGCAACTCTTTTATAGCCTCCAGAATCTGCAGACCCAGGTTGATGGCAATGTTGCTGTTATGGAGATGCTTACTGTTTTACCGGAAGAAGTTTTAGATTCCCAAAATACTGACTCGAAAATAAGTTTAGCCGACAGAAGCCAGTATGGTCAAGAGCTTCTCTCGCACACACCTACGGTTCTTGAGTTCCTATTGCAACAATCTGAGAAAAGGTTTGATAGTGGTATACAACAACATGAAAGCAACAGAAAAATTCTGCGTTGCTTACTAAGTTGGGTTCGAGCTGGGTGCTTCTCAGAGATTCCCCAGGGATTACTACCAGCACATCCACTTCTTAACTTTGTCTTTAGTTCTTTGCAGGTGCCATCTTCATTTGATCTGGCAATTGAAGTTCTCATTGAGCTTGTGAGTCGACATGAGGTTTTGTTATGTAGGGTGCATTTCATTAAAGAAGTTCTACTTCTACCAGCTCTCAGTAATGGAGACGAGAAAATAGTAGGTGGTCTTGCGTGCTTATTGTCAGAGATTGGGCAGGCTGCTCCATCTCTGATAGTAGAAGCAAGTGTTGAAGCCCTTGCACTGGCAGATGCACTTTTAAGCTGTGTGACATTTCCAAGTGAGGACTGGGAGATAGCAGACTCAACTTTGCAATTTTGGTCTGGGTTAGCAAGCTATATCCTTGGCCTTGATGAGAACAGTACAAATCAAAGGAAGCAAGTGGAAGACATGTTTTTCCCTGTATTTTCAGCACTACTTGATGCACTTTTGTTACGTGCCCAGGTAGATGATTCTATGTTCAATGACGACCAAGGAACACCGGAGCTGCCTGATGGCCTTGTCTATTTTAGAACGAATCTTGTTGAACTGTTGGTGGATATTTGTCAGCTTTTAAGATCTGCTACATTTGTACAGAAGCTTTTCTTTGGTGGTTGGGCCTCTGCAAATGCACCAATAGCTTGGAAGGATGTGGAAACCAAGTTGTTTGCTCTTAATGTGGTCGCTGAGGTAATCCTACAGGAAGGCCAAATCTTTGATTTCTCGGTCATTATGCAGTTGGTGACGGTTTTGTCCACTAGGCCGTTGGATGAACTGAAGGGCATCATGTGCATTGTGCATAGATCTCTTGCAGATGTTGTTGGCTCCTATTCTAAGTGGATCTCTGCTTTTCAAACAAATGCTAGACCCTTACTGTTATTTCTTGCTGCTGGAATATCAGAACCCTTGTCCTCGAGTTCTTGTGCATCTGCATTGCGTAAAGTTTGTGAAGATGCTTCTGCAGTGATGTATGAACCTTCAAATTTGGAGATTTTGATGTGGATAGGAGAGGGTCTGGAGAAGAGTCATTTACCTTTGGAAGATGAGGAAGAAGTTGTTAGTGCAGTTAGTCTGATCCTTGGTTCTATTAATAACAAAGAATTAAAGAGCAACTTATTGGCTAGATTGCTTTCTTCTAGCTTTGAAGCTATTGGGAAACTTGTTGATAATGATAGCAGCCATTGCCTAAGACAAAATCCTGCTACCTATACACAAATTTCGAACTCTGGTGCAAGAGGGCTTTACAGGATGGGAACTGTATTCAGCCATCTTGCAACATCCGTGCAGAGTGTATCTTCTGGAGATGGTTGTATGCTTGCGCTATTGCAAGCGTTTTGGCCAATGCTAGAGAAGCTTTTCAGGTCTGAGCACATGGAGAATGGTAATTTATCAACCGCAGCTTGCCGAGCACTTACCCAAGCAATTCAGTCATCAGGCGAACACTTCTTAAGGCTACTGCCTGAAGTACTAGATTGCCTATCAACAAATTATGTGTCCTTCCAAAGTCATGAATGCTACATAAGAACTGCATCTGTTGTGATTGAAGAATTTGGTCACAAAGAAGAGTATGGAGCTTTATTTGTCACTACTTTGGAGAGATTTACGCATGCCGCATCGGTAATGGCTCTTAATTCTTCATATATATGTGACCAAGAGCCTGATCTAGTAGAGGCGTACACAAATTTTGCATCCACATATGTTCGCGGAACTCGTAAGGAAGTAGTGGCTGCATCTGGTACCCTTCTTGAAATTTCCTTTCAAAAGGCAGCTATATGCTGCACAGCTATGCATCGTGGAGCCGCACTGGCATCCATGTCATACTTATCTTGTTTCTTGGAGGTGAGCCTGGCCTCTTTGTTGGATTCCATGTCTTGTATTCCTGAAGGGTCATTCAGTGCAATGGCCATTCAAGTCATATCCCACAGTGGGGAGGGACTTGTATCAAATCTGGTTTATGCTTTACTTGGTGTTTCAGCAATGTCACGGGTTCACAAATGTGCCACTATTTTGCAACAATTGGCAGCAATATGCAGTTTAAGTGAGAGCACAACCGGCAAGGCTATTCTTTGTTGGGAATCTTTGCATGGATGGTTGCAGTCAGCGGTCCAGGCTCTTCCTGCTGAATACCTGAAGCAAGGGGAACTTGAAACTTTAGTGCCGGTTTGGTCTAAGGCCCTTGCCGGTGCAGCCTCAGATTATATCCAGAGCAGAAGTTGTGATGGAGGGCATAACAATTATGGTCACATGCAAGGGAAAGGTGGAAGAGTTTTGAAGCGTTTAGTCCGTGAATTTGCTGATAGCCACCGCAATATTCCAAACTTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004040 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016053 GO:0016787 GO:0016810 GO:0016811 GO:0018130 GO:0019438 GO:0019752 GO:0031974 GO:0031981 GO:0032787 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043864 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00360 ko00380 ko00627 ko00643 ko01120 map00330 map00360 map00380 map00627 map00643 map01120

Pfam Domains

Protein Families

Amidase

Protein Analysis

1008

Amino Acids

110.46

Weight (kDa)

5.12

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Xpo1	PF08389	104 - 260	4.4e-19	Exportin 1-like protein
TPR_TNPO3_IPO13_2nd	PF24138	290 - 384	6.6e-08	Transportin-3/Importin-13 second TPR domain
TPR_TNPO3_IPO13_4th	PF24139	673 - 769	1.4e-08	Transportin-3/Importin-13 fourth TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08980
fragaria_vesca	FvH4_6g05640 FvH4_6g05640 FvH4_6g05640 FvH4_6g05640
malus_domestica	MD00G1147100.v1.1 MD00G1147200.v1.1 MD00G1192400.v1.1 MD04G1207000.v1.1 MD12G1220800.v1.1 MD12G1220900.v1.1 MD12G1221100.v1.1
prunus_persica	Prupe.6G327700_v2.0.a1 Prupe.6G327700_v2.0.a1
pyrus_communis	pycom04g18300 pycom12g20660 pycom12g20670 pycom12g20680 pycom12g20700 pycom12g20710 pycom12g20760
rosa_chinensis	RchiOBHm_Chr3g0454411 RchiOBHm_Chr3g0454431 RchiOBHm_Chr3g0454461 RchiOBHm_Chr3g0454491
rosa_laevigata	RLG00000025440 RLG00000025441 RLG00000025442
rosa_multiflora	Rmu_sc0007209.1_g000005 Rmu_sc0026738.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425030 Rroxscaffold_6G00425050
rosa_rugosa	Rorug02G0654600 Rorug02G0654700
rosa_samantha	Rh1BG006800 Rh3AG058700 Rh3AG059100 Rh3AG059200 Rh3BG060700 Rh3BG061100 Rh3BG061300 Rh3CG059500 Rh3CG059900 Rh3CG060100 Rh3DG060800 Rh3DG061000
rosa_wichuraiana	Rw3G004570 Rw3G004580 Rw3G004590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	733
AasI	GACNNNNNNGTC	1 cut(s)	1450
Acc36I	ACCTGC	2 cut(s)	246, 733
Acc65I	GGTACC	1 cut(s)	2435
AccB1I	GGYRCC	2 cut(s)	745, 2435
AccI	GTMKAC	2 cut(s)	610, 796
AccII	CGCG	3 cut(s)	69, 360, 2403
AciI	CCGC	8 cut(s)	67, 114, 2094, 2310, 2403, 2499, 2801, 3004
AclWI	GGATC	3 cut(s)	211, 1547, 1768
AcoI	YGGCCR	2 cut(s)	2036, 2601
AcsI	RAATTY	7 cut(s)	636, 1681, 1914, 2246, 2380, 2448, 2987
AcuI	CTGAAG	4 cut(s)	1496, 2181, 2601, 2849
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	5 cut(s)	1084, 1293, 2166, 2375, 2437
AfiI	CCNNNNNNNGG	5 cut(s)	244, 280, 964, 2625, 2626
AflII	CTTAAG	1 cut(s)	2146
AflIII	ACRYGT	1 cut(s)	1110
AjiI	CACGTC	1 cut(s)	37
AjnI	CCWGG	5 cut(s)	420, 690, 1161, 2544, 2805
AleI	CACNNNNGTG	1 cut(s)	2694
Alw21I	GWGCWC	3 cut(s)	2070, 2110, 2747
Alw26I	GTCTC	1 cut(s)	861
AlwI	GGATC	3 cut(s)	211, 1547, 1768
AlwNI	CAGNNNCTG	2 cut(s)	88, 412
Ama87I	CYCGRG	1 cut(s)	1612
ApoI	RAATTY	7 cut(s)	636, 1681, 1914, 2246, 2380, 2448, 2987
ArsI	GACNNNNNNTTYG	2 cut(s)	2177, 2209
AseI	ATTAAT	1 cut(s)	1788
Asp700I	GAANNNNTTC	2 cut(s)	1301, 2054
Asp718I	GGTACC	1 cut(s)	2435
AspLEI	GCGC	4 cut(s)	25, 360, 362, 2020
AspS9I	GGNCC	5 cut(s)	120, 305, 1317, 2803, 2872
AsuC2I	CCSGG	1 cut(s)	246
AsuHPI	GGTGA	5 cut(s)	133, 146, 302, 1453, 2551
AsuII	TTCGAA	1 cut(s)	1919
AvaI	CYCGRG	1 cut(s)	1612
AvaII	GGWCC	1 cut(s)	2803
BaeGI	GKGCMC	1 cut(s)	1162
BalI	TGGCCA	2 cut(s)	2038, 2603
BanI	GGYRCC	2 cut(s)	745, 2435
BbsI	GAAGAC	1 cut(s)	1113
Bbv12I	GWGCWC	3 cut(s)	2070, 2110, 2747
BbvCI	CCTCAGC	1 cut(s)	1386
BceAI	ACGGC	2 cut(s)	107, 1447
BcgI	CGANNNNNNTGC	4 cut(s)	173, 207, 654, 688
BciT130I	CCWGG	5 cut(s)	422, 692, 1163, 2546, 2807
BcnI	CCSGG	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	861
BfaI	CTAG	7 cut(s)	1458, 1563, 1821, 1836, 2045, 2168, 2363
BfmI	CTRYAG	4 cut(s)	239, 413, 1397, 1659
BfrI	CTTAAG	1 cut(s)	2146
BfuAI	ACCTGC	2 cut(s)	246, 733
BglI	GCCNNNNNGGC	2 cut(s)	119, 2504
BglII	AGATCT	2 cut(s)	1277, 1502
BmcAI	AGTACT	1 cut(s)	2166
Bme1390I	CCNGG	6 cut(s)	246, 422, 692, 1163, 2546, 2807
Bme18I	GGWCC	1 cut(s)	2803
BmeT110I	CYCGRG	1 cut(s)	1612
BmgBI	CACGTC	1 cut(s)	37
BmgT120I	GGNCC	5 cut(s)	120, 305, 1317, 2803, 2872
BmiI	GGNNCC	5 cut(s)	169, 747, 1525, 2437, 2497
BmrFI	CCNGG	6 cut(s)	246, 422, 692, 1163, 2546, 2807
BmrI	ACTGGG	1 cut(s)	1018
BmuI	ACTGGG	1 cut(s)	1018
BpiI	GAAGAC	1 cut(s)	1113
BplI	GAGNNNNNCTC	2 cut(s)	530, 562
BpmI	CTGGAG	3 cut(s)	389, 1736, 2019
Bpu10I	CCTNAGC	1 cut(s)	1386
Bpu14I	TTCGAA	1 cut(s)	1919
BpuEI	CTTGAG	1 cut(s)	587
BpuMI	CCSGG	1 cut(s)	246
BsaAI	YACGTR	1 cut(s)	1157
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	7 cut(s)	420, 690, 691, 1063, 1161, 1192, 1777
BsaWI	WCCGGW	2 cut(s)	466, 1201
Bsc4I	CCNNNNNNNGG	5 cut(s)	244, 280, 964, 2625, 2626
Bse118I	RCCGGY	3 cut(s)	2750, 2857, 2879
Bse1I	ACTGG	4 cut(s)	526, 969, 1013, 2508
Bse3DI	GCAATG	5 cut(s)	439, 1631, 1879, 2604, 2682
BseBI	CCWGG	5 cut(s)	422, 692, 1163, 2546, 2807
BseDI	CCNNGG	7 cut(s)	420, 690, 691, 1063, 1161, 1192, 1777
BseGI	GGATG	9 cut(s)	135, 709, 1354, 1474, 1953, 1976, 2387, 2507, 2792
BseLI	CCNNNNNNNGG	5 cut(s)	244, 280, 964, 2625, 2626
BseMI	GCAATG	5 cut(s)	439, 1631, 1879, 2604, 2682
BseMII	CTCAG	6 cut(s)	579, 693, 871, 1377, 2055, 2904
BseNI	ACTGG	4 cut(s)	526, 969, 1013, 2508
BsePI	GCGCGC	1 cut(s)	358
BseSI	GKGCMC	1 cut(s)	1162
BseYI	CCCAGC	1 cut(s)	668
BsgI	GTGCAG	5 cut(s)	330, 1782, 2003, 2461, 2904
Bsh1236I	CGCG	3 cut(s)	69, 360, 2403
BshNI	GGYRCC	2 cut(s)	745, 2435
BsiHKAI	GWGCWC	3 cut(s)	2070, 2110, 2747
BsiHKCI	CYCGRG	1 cut(s)	1612
BsiSI	CCGG	6 cut(s)	245, 467, 1202, 2751, 2858, 2880
BslFI	GGGAC	1 cut(s)	2646
BslI	CCNNNNNNNGG	5 cut(s)	244, 280, 964, 2625, 2626
BsmAI	GTCTC	1 cut(s)	861
BsmBI	CGTCTC	1 cut(s)	861
BsmFI	GGGAC	1 cut(s)	2646
BsmI	GAATGC	1 cut(s)	2216
BsoBI	CYCGRG	1 cut(s)	1612
Bsp119I	TTCGAA	1 cut(s)	1919
Bsp1286I	GDGCHC	4 cut(s)	1162, 2070, 2110, 2747
Bsp1407I	TGTACA	1 cut(s)	1291
Bsp143I	GATC	7 cut(s)	216, 760, 1277, 1502, 1539, 1773, 2359
BspACI	CCGC	8 cut(s)	67, 114, 2094, 2310, 2403, 2499, 2801, 3004
BspCNI	CTCAG	6 cut(s)	580, 692, 870, 1378, 2056, 2903
BspFNI	CGCG	3 cut(s)	69, 360, 2403
BspHI	TCATGA	1 cut(s)	2206
BspLI	GGNNCC	5 cut(s)	169, 747, 1525, 2437, 2497
BspMAI	CTGCAG	3 cut(s)	243, 417, 1663
BspMI	ACCTGC	2 cut(s)	246, 733
BspPI	GGATC	3 cut(s)	211, 1547, 1768
BspQI	GCTCTTC	1 cut(s)	2817
BspT104I	TTCGAA	1 cut(s)	1919
BspT107I	GGYRCC	2 cut(s)	745, 2435
BspTI	CTTAAG	1 cut(s)	2146
BsrDI	GCAATG	5 cut(s)	439, 1631, 1879, 2604, 2682
BsrFI	RCCGGY	3 cut(s)	2750, 2857, 2879
BsrGI	TGTACA	1 cut(s)	1291
BsrI	ACTGG	4 cut(s)	526, 969, 1013, 2508
BssAI	RCCGGY	3 cut(s)	2750, 2857, 2879
BssECI	CCNNGG	7 cut(s)	420, 690, 691, 1063, 1161, 1192, 1777
BssHII	GCGCGC	1 cut(s)	358
BssMI	GATC	7 cut(s)	216, 760, 1277, 1502, 1539, 1773, 2359
BssNAI	GTATAC	1 cut(s)	611
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	3 cut(s)	1063, 1192, 1777
Bst1107I	GTATAC	1 cut(s)	611
Bst2UI	CCWGG	5 cut(s)	422, 692, 1163, 2546, 2807
Bst4CI	ACNGT	8 cut(s)	460, 562, 1082, 1251, 1447, 1575, 1957, 2624
Bst6I	CTCTTC	4 cut(s)	1715, 2256, 2817, 2956
BstACI	GRCGYC	1 cut(s)	111
BstAFI	CTTAAG	1 cut(s)	2146
BstAPI	GCANNNNNTGC	3 cut(s)	344, 1488, 1881
BstAUI	TGTACA	1 cut(s)	1291
BstBAI	YACGTR	1 cut(s)	1157
BstBI	TTCGAA	1 cut(s)	1919
BstC8I	GCNNGC	9 cut(s)	27, 360, 895, 918, 1054, 2016, 2028, 2101, 2307
BstF5I	GGATG	9 cut(s)	135, 709, 1354, 1474, 1953, 1976, 2387, 2507, 2792
BstFNI	CGCG	3 cut(s)	69, 360, 2403
BstHHI	GCGC	4 cut(s)	25, 360, 362, 2020
BstKTI	GATC	7 cut(s)	219, 763, 1280, 1505, 1542, 1776, 2362
BstMAI	GTCTC	1 cut(s)	861
BstMBI	GATC	7 cut(s)	216, 760, 1277, 1502, 1539, 1773, 2359
BstNI	CCWGG	5 cut(s)	422, 692, 1163, 2546, 2807
BstNSI	RCATGY	3 cut(s)	1114, 2309, 2947
BstSCI	CCNGG	6 cut(s)	244, 420, 690, 1161, 2544, 2805
BstSFI	CTRYAG	4 cut(s)	239, 413, 1397, 1659
BstSLI	GKGCMC	1 cut(s)	1162
BstUI	CGCG	3 cut(s)	69, 360, 2403
BstV2I	GAAGAC	1 cut(s)	1113
BstX2I	RGATCY	4 cut(s)	216, 1277, 1502, 1539
BstXI	CCANNNNNNTGG	3 cut(s)	227, 428, 1341
BstYI	RGATCY	4 cut(s)	216, 1277, 1502, 1539
BstZ17I	GTATAC	1 cut(s)	611
BtrI	CACGTC	1 cut(s)	37
BtsCI	GGATG	9 cut(s)	135, 709, 1354, 1474, 1953, 1976, 2387, 2507, 2792
BtsI	GCAGTG	1 cut(s)	1668
BtsIMutI	CAGTG	6 cut(s)	89, 962, 1668, 2501, 2599, 2629
BveI	ACCTGC	2 cut(s)	246, 733
Cac8I	GCNNGC	9 cut(s)	27, 360, 895, 918, 1054, 2016, 2028, 2101, 2307
CaiI	CAGNNNCTG	2 cut(s)	88, 412
CciI	TCATGA	1 cut(s)	2206
CfoI	GCGC	4 cut(s)	25, 360, 362, 2020
Cfr10I	RCCGGY	3 cut(s)	2750, 2857, 2879
Cfr13I	GGNCC	5 cut(s)	120, 305, 1317, 2803, 2872
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	5 cut(s)	1083, 1292, 2165, 2374, 2436
CviQI	GTAC	5 cut(s)	1083, 1292, 2165, 2374, 2436
DpnI	GATC	7 cut(s)	218, 762, 1279, 1504, 1541, 1775, 2361
DpnII	GATC	7 cut(s)	216, 760, 1277, 1502, 1539, 1773, 2359
DrdI	GACNNNNNNGTC	1 cut(s)	1450
DseDI	GACNNNNNNGTC	1 cut(s)	1450
EaeI	YGGCCR	2 cut(s)	2036, 2601
Eam1104I	CTCTTC	4 cut(s)	1715, 2256, 2817, 2956
EarI	CTCTTC	4 cut(s)	1715, 2256, 2817, 2956
Eco130I	CCWWGG	3 cut(s)	1063, 1192, 1777
Eco47I	GGWCC	1 cut(s)	2803
Eco57I	CTGAAG	4 cut(s)	1496, 2181, 2601, 2849
Eco88I	CYCGRG	1 cut(s)	1612
EcoO109I	RGGNCCY	2 cut(s)	305, 2872
EcoRII	CCWGG	5 cut(s)	420, 690, 1161, 2544, 2805
EcoT14I	CCWWGG	3 cut(s)	1063, 1192, 1777
EcoT22I	ATGCAT	1 cut(s)	2490
ErhI	CCWWGG	3 cut(s)	1063, 1192, 1777
Esp3I	CGTCTC	1 cut(s)	861
FalI	AAGNNNNNCTT	8 cut(s)	828, 860, 1289, 1321, 1796, 1828, 2826, 2858
FaqI	GGGAC	1 cut(s)	2646
FauNDI	CATATG	1 cut(s)	2395
FblI	GTMKAC	2 cut(s)	610, 796
FokI	GGATG	9 cut(s)	122, 696, 1361, 1481, 1960, 1963, 2374, 2494, 2799
FspBI	CTAG	7 cut(s)	1458, 1563, 1821, 1836, 2045, 2168, 2363
GlaI	GCGC	4 cut(s)	24, 359, 361, 2019
GsaI	CCCAGC	1 cut(s)	672
GsuI	CTGGAG	3 cut(s)	389, 1736, 2019
HapII	CCGG	6 cut(s)	245, 467, 1202, 2751, 2858, 2880
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	4 cut(s)	25, 360, 362, 2020
Hin1I	GRCGYC	1 cut(s)	111
Hin6I	GCGC	4 cut(s)	23, 358, 360, 2018
HinP1I	GCGC	4 cut(s)	23, 358, 360, 2018
HincII	GTYRAC	1 cut(s)	797
HindII	GTYRAC	1 cut(s)	797
HindIII	AAGCTT	2 cut(s)	1298, 2051
HpaII	CCGG	6 cut(s)	245, 467, 1202, 2751, 2858, 2880
HphI	GGTGA	5 cut(s)	133, 146, 302, 1453, 2551
Hpy166II	GTNNAC	6 cut(s)	34, 611, 797, 1455, 2376, 2689
Hpy188I	TCNGA	9 cut(s)	148, 589, 682, 907, 933, 1600, 1773, 2065, 2893
Hpy8I	GTNNAC	6 cut(s)	34, 611, 797, 1455, 2376, 2689
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	9 cut(s)	10, 284, 1339, 1397, 1471, 1686, 2206, 2450, 2576
HpyCH4III	ACNGT	8 cut(s)	460, 562, 1082, 1251, 1447, 1575, 1957, 2624
HpyCH4IV	ACGT	2 cut(s)	36, 1156
HpySE526I	ACGT	2 cut(s)	36, 1156
Hsp92I	GRCGYC	1 cut(s)	111
HspAI	GCGC	4 cut(s)	23, 358, 360, 2018
KpnI	GGTACC	1 cut(s)	2439
Kzo9I	GATC	7 cut(s)	216, 760, 1277, 1502, 1539, 1773, 2359
LguI	GCTCTTC	1 cut(s)	2817
LmnI	GCTCC	7 cut(s)	173, 248, 928, 1204, 1529, 2270, 2495
MaeI	CTAG	7 cut(s)	1458, 1563, 1821, 1836, 2045, 2168, 2363
MaeII	ACGT	2 cut(s)	36, 1156
MaeIII	GTNAC	9 cut(s)	233, 988, 1152, 1441, 2252, 2281, 2345, 2679, 2939
MalI	GATC	7 cut(s)	218, 762, 1279, 1504, 1541, 1775, 2361
MboI	GATC	7 cut(s)	216, 760, 1277, 1502, 1539, 1773, 2359
MfeI	CAATTG	2 cut(s)	768, 2714
MflI	RGATCY	4 cut(s)	216, 1277, 1502, 1539
MhlI	GDGCHC	4 cut(s)	1162, 2070, 2110, 2747
MlsI	TGGCCA	2 cut(s)	2038, 2603
MluNI	TGGCCA	2 cut(s)	2038, 2603
MlyI	GAGTC	5 cut(s)	65, 491, 802, 1016, 1732
MmeI	TCCRAC	2 cut(s)	1446, 2538
Mox20I	TGGCCA	2 cut(s)	2038, 2603
Mph1103I	ATGCAT	1 cut(s)	2490
MroXI	GAANNNNTTC	2 cut(s)	1301, 2054
MscI	TGGCCA	2 cut(s)	2038, 2603
MslI	CAYNNNNRTG	3 cut(s)	2341, 2483, 2694
Msp20I	TGGCCA	2 cut(s)	2038, 2603
MspA1I	CMGCKG	1 cut(s)	2801
MspCI	CTTAAG	1 cut(s)	2146
MspI	CCGG	6 cut(s)	245, 467, 1202, 2751, 2858, 2880
MspR9I	CCNGG	6 cut(s)	246, 422, 692, 1163, 2546, 2807
MunI	CAATTG	2 cut(s)	768, 2714
Mva1269I	GAATGC	1 cut(s)	2216
MvaI	CCWGG	5 cut(s)	422, 692, 1163, 2546, 2807
MvnI	CGCG	3 cut(s)	69, 360, 2403
NciI	CCSGG	1 cut(s)	246
NdeI	CATATG	1 cut(s)	2395
NdeII	GATC	7 cut(s)	216, 760, 1277, 1502, 1539, 1773, 2359
NlaIV	GGNNCC	5 cut(s)	169, 747, 1525, 2437, 2497
NmeAIII	GCCGAG	1 cut(s)	2129
NmuCI	GTSAC	7 cut(s)	988, 1441, 2252, 2281, 2345, 2679, 2939
NsiI	ATGCAT	1 cut(s)	2490
NspI	RCATGY	3 cut(s)	1114, 2309, 2947
NspV	TTCGAA	1 cut(s)	1919
OliI	CACNNNNGTG	1 cut(s)	2694
PaeI	GCATGC	1 cut(s)	2309
PaeR7I	CTCGAG	1 cut(s)	1612
PagI	TCATGA	1 cut(s)	2206
PaqCI	CACCTGC	1 cut(s)	733
PasI	CCCWGGG	1 cut(s)	691
PauI	GCGCGC	1 cut(s)	358
PciI	ACATGT	1 cut(s)	1110
PciSI	GCTCTTC	1 cut(s)	2817
PcsI	WCGNNNNNNNCGW	1 cut(s)	2407
PctI	GAATGC	1 cut(s)	2216
PdmI	GAANNNNTTC	2 cut(s)	1301, 2054
PfeI	GAWTC	9 cut(s)	43, 202, 409, 482, 685, 1172, 1237, 2561, 2774
PleI	GAGTC	5 cut(s)	64, 491, 801, 1016, 1731
PpsI	GAGTC	5 cut(s)	64, 491, 801, 1016, 1731
Ppu21I	YACGTR	1 cut(s)	1157
PscI	ACATGT	1 cut(s)	1110
PshBI	ATTAAT	1 cut(s)	1788
Psp6I	CCWGG	5 cut(s)	420, 690, 1161, 2544, 2805
PspFI	CCCAGC	1 cut(s)	668
PspGI	CCWGG	5 cut(s)	420, 690, 1161, 2544, 2805
PspN4I	GGNNCC	5 cut(s)	169, 747, 1525, 2437, 2497
PspPI	GGNCC	5 cut(s)	120, 305, 1317, 2803, 2872
PspXI	VCTCGAGB	1 cut(s)	1612
PstI	CTGCAG	3 cut(s)	243, 417, 1663
PstNI	CAGNNNCTG	2 cut(s)	88, 412
PsuI	RGATCY	4 cut(s)	216, 1277, 1502, 1539
PteI	GCGCGC	1 cut(s)	358
RsaI	GTAC	5 cut(s)	1084, 1293, 2166, 2375, 2437
RsaNI	GTAC	5 cut(s)	1083, 1292, 2165, 2374, 2436
RseI	CAYNNNNRTG	3 cut(s)	2341, 2483, 2694
SalI	GTCGAC	1 cut(s)	795
SapI	GCTCTTC	1 cut(s)	2817
Sau3AI	GATC	7 cut(s)	216, 760, 1277, 1502, 1539, 1773, 2359
Sau96I	GGNCC	5 cut(s)	120, 305, 1317, 2803, 2872
ScaI	AGTACT	1 cut(s)	2166
SchI	GAGTC	5 cut(s)	65, 491, 802, 1016, 1732
ScrFI	CCNGG	6 cut(s)	246, 422, 692, 1163, 2546, 2807
SduI	GDGCHC	4 cut(s)	1162, 2070, 2110, 2747
SfcI	CTRYAG	4 cut(s)	239, 413, 1397, 1659
Sfr274I	CTCGAG	1 cut(s)	1612
SfuI	TTCGAA	1 cut(s)	1919
SinI	GGWCC	1 cut(s)	2803
SlaI	CTCGAG	1 cut(s)	1612
SmiMI	CAYNNNNRTG	3 cut(s)	2341, 2483, 2694
SmlI	CTYRAG	3 cut(s)	566, 1612, 2146
SmoI	CTYRAG	3 cut(s)	566, 1612, 2146
SphI	GCATGC	1 cut(s)	2309
SsiI	CCGC	8 cut(s)	67, 114, 2094, 2310, 2403, 2499, 2801, 3004
SspI	AATATT	1 cut(s)	3010
SspMI	CTAG	7 cut(s)	1458, 1563, 1821, 1836, 2045, 2168, 2363
StyD4I	CCNGG	6 cut(s)	244, 420, 690, 1161, 2544, 2805
StyI	CCWWGG	3 cut(s)	1063, 1192, 1777
TaaI	ACNGT	8 cut(s)	460, 562, 1082, 1251, 1447, 1575, 1957, 2624
TaiI	ACGT	2 cut(s)	39, 1159
TaqI	TCGA	6 cut(s)	183, 500, 664, 796, 1613, 1919
TaqII	GACCGA	1 cut(s)	1414
TatI	WGTACW	3 cut(s)	1082, 1291, 2164
TauI	GCSGC	3 cut(s)	116, 2312, 2501
TfiI	GAWTC	9 cut(s)	43, 202, 409, 482, 685, 1172, 1237, 2561, 2774
TscAI	CASTG	6 cut(s)	89, 969, 1668, 2508, 2599, 2629
TseFI	GTSAC	7 cut(s)	988, 1441, 2252, 2281, 2345, 2679, 2939
Tsp45I	GTSAC	7 cut(s)	988, 1441, 2252, 2281, 2345, 2679, 2939
TspDTI	ATGAA	8 cut(s)	29, 636, 744, 817, 1485, 1686, 2223, 2325
TspGWI	ACGGA	2 cut(s)	1969, 2972
TspRI	CASTG	6 cut(s)	89, 969, 1668, 2508, 2599, 2629
Vha464I	CTTAAG	1 cut(s)	2146
VpaK11BI	GGWCC	1 cut(s)	2803
VspI	ATTAAT	1 cut(s)	1788
XapI	RAATTY	7 cut(s)	636, 1681, 1914, 2246, 2380, 2448, 2987
XceI	RCATGY	3 cut(s)	1114, 2309, 2947
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1005, 1462
XhoI	CTCGAG	1 cut(s)	1612
XmiI	GTMKAC	2 cut(s)	610, 796
XmnI	GAANNNNTTC	2 cut(s)	1301, 2054
XspI	CTAG	7 cut(s)	1458, 1563, 1821, 1836, 2045, 2168, 2363
ZrmI	AGTACT	1 cut(s)	2166
Zsp2I	ATGCAT	1 cut(s)	2490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.