Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026738.1

Orthogroup ID

OG0001680

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2233

Gene Structure 2233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026738.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

gatgctggtgtccttgcaattcctacagttccagggcctccgccaaaaatacaaatggatcctgctacacttgaaacatttcgcgccagggcttttagcttgttgtccattgccggagtatctggattctgccaggtgaacataccactaggcatgtgtgaagatctacctgtgtcggtttccttgctggcaaagcacggctcagatggattcctgctgaataataatggtttacttagactggagctcaacgatattggattagagtttttgtggccagttggtaggattaaggaagcactatccggaatagatgtttccaacccatcaacacctacctcttgtccagcggaagcgatcaaatcacttgctattgaagaactaaatattccagaggcaaaaatcggaattgctgctagagtcttggcttttctttggctatattcatctatccaagggcatgggactctggtttgcttctacagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

162

Amino Acids

17.17

Weight (kDa)

4.9

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08980
fragaria_vesca	FvH4_6g05640 FvH4_6g05640 FvH4_6g05640 FvH4_6g05640
malus_domestica	MD00G1147100.v1.1 MD00G1147200.v1.1 MD00G1192400.v1.1 MD04G1207000.v1.1 MD12G1220800.v1.1 MD12G1220900.v1.1 MD12G1221100.v1.1
prunus_persica	Prupe.6G327700_v2.0.a1 Prupe.6G327700_v2.0.a1
pyrus_communis	pycom04g18300 pycom12g20660 pycom12g20670 pycom12g20680 pycom12g20700 pycom12g20710 pycom12g20760
rosa_chinensis	RchiOBHm_Chr3g0454411 RchiOBHm_Chr3g0454431 RchiOBHm_Chr3g0454461 RchiOBHm_Chr3g0454491
rosa_laevigata	RLG00000025440 RLG00000025441 RLG00000025442
rosa_multiflora	Rmu_sc0007209.1_g000005 Rmu_sc0026738.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425030 Rroxscaffold_6G00425050
rosa_rugosa	Rorug02G0654600 Rorug02G0654700
rosa_samantha	Rh1BG006800 Rh3AG058700 Rh3AG059100 Rh3AG059200 Rh3BG060700 Rh3BG061100 Rh3BG061300 Rh3CG059500 Rh3CG059900 Rh3CG060100 Rh3DG060800 Rh3DG061000
rosa_wichuraiana	Rw3G004570 Rw3G004580 Rw3G004590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	84
AccIII	TCCGGA	1 cut(s)	305
AciI	CCGC	2 cut(s)	41, 350
AclWI	GGATC	2 cut(s)	53, 66
AcoI	YGGCCR	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	74, 377
AjnI	CCWGG	3 cut(s)	31, 86, 132
AluBI	AGCT	3 cut(s)	99, 247, 486
AluI	AGCT	3 cut(s)	99, 247, 486
Alw21I	GWGCWC	1 cut(s)	249
AlwI	GGATC	2 cut(s)	53, 66
Aor13HI	TCCGGA	1 cut(s)	305
AoxI	GGCC	2 cut(s)	35, 275
ApeKI	GCWGC	1 cut(s)	413
Asp700I	GAANNNNTTC	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	148
BalI	TGGCCA	1 cut(s)	277
BamHI	GGATCC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	2 cut(s)	200, 334
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	3 cut(s)	33, 88, 134
BfaI	CTAG	2 cut(s)	149, 417
BfmI	CTRYAG	2 cut(s)	24, 481
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	1 cut(s)	414
BlsI	GCNGC	1 cut(s)	415
Bme1390I	CCNGG	3 cut(s)	33, 88, 134
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	3 cut(s)	33, 88, 134
BpmI	CTGGAG	1 cut(s)	263
BsaJI	CCNNGG	3 cut(s)	32, 87, 454
BsaWI	WCCGGW	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	246, 278
Bse3DI	GCAATG	1 cut(s)	108
BseAI	TCCGGA	1 cut(s)	305
BseBI	CCWGG	3 cut(s)	33, 88, 134
BseDI	CCNNGG	3 cut(s)	32, 87, 454
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	2 cut(s)	246, 278
BseXI	GCAGC	1 cut(s)	400
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	37, 277
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	2 cut(s)	114, 306
BslFI	GGGAC	1 cut(s)	478
BsmFI	GGGAC	1 cut(s)	478
BsnI	GGCC	2 cut(s)	37, 277
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp13I	TCCGGA	1 cut(s)	305
Bsp143I	GATC	3 cut(s)	58, 163, 357
BspACI	CCGC	2 cut(s)	41, 350
BspANI	GGCC	2 cut(s)	37, 277
BspCNI	CTCAG	1 cut(s)	215
BspEI	TCCGGA	1 cut(s)	305
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	60
BspPI	GGATC	2 cut(s)	53, 66
BsrDI	GCAATG	1 cut(s)	108
BsrI	ACTGG	2 cut(s)	246, 278
BssECI	CCNNGG	3 cut(s)	32, 87, 454
BssMI	GATC	3 cut(s)	58, 163, 357
BssT1I	CCWWGG	1 cut(s)	454
Bst2UI	CCWGG	3 cut(s)	33, 88, 134
Bst4CI	ACNGT	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	2 cut(s)	202, 236
BstFNI	CGCG	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	3 cut(s)	61, 166, 360
BstMBI	GATC	3 cut(s)	58, 163, 357
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 483
BstNI	CCWGG	3 cut(s)	33, 88, 134
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	3 cut(s)	31, 86, 132
BstSFI	CTRYAG	2 cut(s)	24, 481
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	400
BstX2I	RGATCY	2 cut(s)	58, 163
BstXI	CCANNNNNNTGG	1 cut(s)	461
BstYI	RGATCY	2 cut(s)	58, 163
BsuRI	GGCC	2 cut(s)	37, 277
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	35
CviAII	CATG	2 cut(s)	154, 461
CviJI	RGCY	9 cut(s)	37, 92, 99, 201, 247, 277, 428, 439, 486
CviKI_1	RGCY	9 cut(s)	37, 92, 99, 201, 247, 277, 428, 439, 486
DdeI	CTNAG	2 cut(s)	202, 236
DpnI	GATC	3 cut(s)	60, 165, 359
DpnII	GATC	3 cut(s)	58, 163, 357
EaeI	YGGCCR	1 cut(s)	275
EciI	GGCGGA	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	454
Eco24I	GRGCYC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	35
EcoRII	CCWGG	3 cut(s)	31, 86, 132
EcoT14I	CCWWGG	1 cut(s)	454
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	454
FaeI	CATG	2 cut(s)	157, 464
FaiI	YATR	4 cut(s)	143, 155, 442, 462
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	2 cut(s)	153, 460
Fnu4HI	GCNGC	1 cut(s)	414
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	414
FspBI	CTAG	2 cut(s)	149, 417
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	414
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	2 cut(s)	37, 277
HapII	CCGG	2 cut(s)	114, 306
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	2 cut(s)	157, 464
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	4 cut(s)	126, 210, 420, 466
HpaII	CCGG	2 cut(s)	114, 306
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	2 cut(s)	139, 233
Hpy188I	TCNGA	2 cut(s)	205, 407
Hpy188III	TCNNGA	3 cut(s)	123, 306, 392
Hpy8I	GTNNAC	2 cut(s)	139, 233
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 483
HpyF3I	CTNAG	2 cut(s)	202, 236
Hsp92II	CATG	2 cut(s)	157, 464
HspAI	GCGC	1 cut(s)	84
Kpn2I	TCCGGA	1 cut(s)	305
Kzo9I	GATC	3 cut(s)	58, 163, 357
LmnI	GCTCC	1 cut(s)	244
Lsp1109I	GCAGC	1 cut(s)	400
MaeI	CTAG	2 cut(s)	149, 417
MalI	GATC	3 cut(s)	60, 165, 359
MboI	GATC	3 cut(s)	58, 163, 357
MboII	GAAGA	2 cut(s)	173, 389
MflI	RGATCY	2 cut(s)	58, 163
MhlI	GDGCHC	1 cut(s)	249
MlsI	TGGCCA	1 cut(s)	277
MluCI	AATT	2 cut(s)	18, 408
MluNI	TGGCCA	1 cut(s)	277
MlyI	GAGTC	2 cut(s)	429, 460
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	3 cut(s)	48, 349, 388
Mox20I	TGGCCA	1 cut(s)	277
MroI	TCCGGA	1 cut(s)	305
MroXI	GAANNNNTTC	1 cut(s)	78
MscI	TGGCCA	1 cut(s)	277
MseI	TTAA	1 cut(s)	291
Msp20I	TGGCCA	1 cut(s)	277
MspA1I	CMGCKG	2 cut(s)	350, 486
MspI	CCGG	2 cut(s)	114, 306
MspR9I	CCNGG	3 cut(s)	33, 88, 134
MvaI	CCWGG	3 cut(s)	33, 88, 134
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	193, 483
NdeII	GATC	3 cut(s)	58, 163, 357
NlaIII	CATG	2 cut(s)	157, 464
NlaIV	GGNNCC	1 cut(s)	60
NspI	RCATGY	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	126, 210
PkrI	GCNGC	1 cut(s)	415
PleI	GAGTC	2 cut(s)	428, 460
PpsI	GAGTC	2 cut(s)	428, 460
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	3 cut(s)	31, 86, 132
PspGI	CCWGG	3 cut(s)	31, 86, 132
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	35
PsuI	RGATCY	2 cut(s)	58, 163
PvuII	CAGCTG	1 cut(s)	486
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	3 cut(s)	58, 163, 357
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	2 cut(s)	429, 460
ScrFI	CCNGG	3 cut(s)	33, 88, 134
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	7 cut(s)	101, 138, 172, 249, 337, 341, 488
SfcI	CTRYAG	2 cut(s)	24, 481
Sse9I	AATT	2 cut(s)	18, 408
SsiI	CCGC	2 cut(s)	41, 350
SspI	AATATT	1 cut(s)	388
SspMI	CTAG	2 cut(s)	149, 417
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	3 cut(s)	31, 86, 132
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	1 cut(s)	28
TasI	AATT	2 cut(s)	18, 408
TfiI	GAWTC	2 cut(s)	126, 210
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TseI	GCWGC	1 cut(s)	413
TspDTI	ATGAA	1 cut(s)	435
XceI	RCATGY	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	2 cut(s)	149, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.