MD00G1192400.v1.1

Amidase 1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
46605733 .. 46609209
3477 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1192400.v1.1.491

Sequence Viewer

Length: 1287 bp
ATGGCGATAGACTCAGATCATGGAGCTTTCGTGGAGAAATTCCTTCTCCGACCGCCGTCTTCGTCACATGACCTTCCTCTGAGCGGCCTCACCTTTGCTGTTAAAGACATATTTGATGTGGCTGGACGTGTGACTGGGTTTGGGAATCCTGATTGGGCGAGGACTCACCCGGCTGCTGAATCAACAGCTCCGGCTGTTTCGGCAATATTGAGTGGAGGTGCCACAAGTATTGGTATAACTGTCATGGGTGAAATGGCATACAGTATAAATGGAGAGAACAAGCATTATGGCACACCCAGAAATCCGTGTGCACCAGATAGGGTGCCTGGAGGCTCTTCTAGCGGTTCTGCTGTTGTCGTAGCTGCAGGCCTCACAGATTTTTCCTTAGGAACTGACACTGGAGGAAGTGTAAGAATTCCTGCTTCATATTGTGGAATTTTTGGGTTTCGGCCATCTCATGGTGTCATTTCTACTTCTGGAGTTACTCCTCTGGCACAAAGTTGCGATACAGTGGGATGGTTTGCAAGGAATCCTGCGATTTTGAATAGAGTTGGACGAGTGTTACTCCAATTGCCTGATACGGGTCCTGTCGTACCCACTCAGTTAATCATCGCAGAAGACTGTTTCCAGCTTTCAAGCGTTCCAAGCAGTCGAGTGAAACAAGTACTTGTTGACTCAGTTGAGAAGTTATTTGGGGGTCATGTTATAAAACATGCTAACCTCGGGGACGTTGTCAAGGACAAAGTTCCAAGCTTGAACTCTTTCTTGGATAAAGGAAATCCAAGTGAAGAGTACATTATACCGTCATTGGCAGCCCTATCAACCGCCAATCGTCTTCTCATAAGGTATGAATTAAAGAGCAACCATGGTGAATGGGTTAGTACAGTCAGACCTGACTTAGGTCCTGGGACAGCAGAACGTATATGGGCAGTTGTTCGGTCAACAGATGAAAATGTTGATGTTTGTCACTCCGTGATGACTGAATTGCGTGCTGCTCTTACTGACCTTCTCGGGGATTTCGGTGTCCTCGCAATGCCTACAGTTCCAGGGGATCCACCAAAGCTGCAAACAGATCCTACTACACTGGGAGCTTTTCGTGCCAGGGCTTTCAGCTTCCTATCCATTGCCGTAGTTTCCGGATTCTGCCAGGTGAGTATACCACTAGGGATGTGCGATAACCTACCTGTTTCTGTTTCCTTGCTGGCAAAGCATGGTTCGGATGGGTTCCTGCTCAATCTTGTGGAGACTCTTTACGACACTCTCAAAGAACACGTCGGGAAGTTGTGA

Protein Analysis

429

Amino Acids

45.11

Weight (kDa)

5.76

Isoelectric Point (pI)

28.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Amidase PF01425 23 - 177 3.1e-49 Amidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 707
AccB1I GGYRCC 2 cut(s) 218, 322
AccB7I CCANNNNNTGG 1 cut(s) 458
AccBSI CCGCTC 1 cut(s) 84
AccI GTMKAC 1 cut(s) 1156
AccIII TCCGGA 1 cut(s) 1136
AciI CCGC 4 cut(s) 53, 84, 342, 825
AclWI GGATC 3 cut(s) 1046, 1059, 1067
AcoI YGGCCR 1 cut(s) 449
AcsI RAATTY 3 cut(s) 38, 414, 435
AdeI CACNNNGTG 1 cut(s) 973
AfaI GTAC 4 cut(s) 594, 666, 794, 883
AfiI CCNNNNNNNGG 5 cut(s) 83, 458, 581, 899, 1012
AflIII ACRYGT 2 cut(s) 127, 1270
AgsI TTSAA 3 cut(s) 544, 636, 757
AjiI CACGTC 2 cut(s) 128, 1273
AjnI CCWGG 5 cut(s) 325, 904, 1045, 1100, 1146
AjuI GAANNNNNNNTTGG 2 cut(s) 749, 781
AluBI AGCT 8 cut(s) 26, 188, 362, 631, 753, 1063, 1091, 1113
AluI AGCT 8 cut(s) 26, 188, 362, 631, 753, 1063, 1091, 1113
Alw21I GWGCWC 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 1238
Alw44I GTGCAC 1 cut(s) 309
AlwI GGATC 3 cut(s) 1046, 1059, 1067
Ama87I CYCGRG 2 cut(s) 722, 1010
Aor13HI TCCGGA 1 cut(s) 1136
AoxI GGCC 3 cut(s) 85, 367, 449
ApaLI GTGCAC 1 cut(s) 309
ApeKI GCWGC 5 cut(s) 173, 362, 812, 992, 1063
ApoI RAATTY 3 cut(s) 38, 414, 435
ArsI GACNNNNNNTTYG 1 cut(s) 1257
Asp700I GAANNNNTTC 1 cut(s) 761
AspS9I GGNCC 2 cut(s) 584, 902
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 5 cut(s) 82, 158, 260, 881, 1162
AvaI CYCGRG 2 cut(s) 722, 1010
AvaII GGWCC 2 cut(s) 584, 902
AxyI CCTNAGG 1 cut(s) 385
BaeGI GKGCMC 1 cut(s) 313
BamHI GGATCC 1 cut(s) 1051
BanI GGYRCC 2 cut(s) 218, 322
BbsI GAAGAC 3 cut(s) 51, 624, 827
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 5 cut(s) 160, 349, 824, 979, 1050
BccI CCATC 3 cut(s) 460, 510, 1214
BceAI ACGGC 2 cut(s) 40, 1112
BciT130I CCWGG 5 cut(s) 327, 906, 1047, 1102, 1148
BcnI CCSGG 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 1238
BfaI CTAG 2 cut(s) 339, 1163
BfmI CTRYAG 2 cut(s) 363, 1038
BisI GCNGC 6 cut(s) 85, 174, 363, 813, 993, 1064
BlsI GCNGC 6 cut(s) 86, 175, 364, 814, 994, 1065
BmcAI AGTACT 1 cut(s) 666
Bme1390I CCNGG 6 cut(s) 170, 327, 906, 1047, 1102, 1148
Bme18I GGWCC 2 cut(s) 584, 902
BmeT110I CYCGRG 2 cut(s) 722, 1010
BmgBI CACGTC 2 cut(s) 128, 1273
BmgT120I GGNCC 2 cut(s) 584, 902
BmiI GGNNCC 5 cut(s) 220, 324, 585, 1053, 1226
BmrFI CCNGG 6 cut(s) 170, 327, 906, 1047, 1102, 1148
BmrI ACTGGG 2 cut(s) 144, 1094
BmuI ACTGGG 2 cut(s) 144, 1094
BoxI GACNNNNGTC 2 cut(s) 55, 900
BpiI GAAGAC 3 cut(s) 51, 624, 827
BplI GAGNNNNNCTC 2 cut(s) 549, 581
BpmI CTGGAG 3 cut(s) 348, 420, 498
BpuMI CCSGG 1 cut(s) 170
BsaJI CCNNGG 5 cut(s) 721, 865, 905, 1046, 1101
BsaWI WCCGGW 1 cut(s) 1136
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 393, 423
Bsc4I CCNNNNNNNGG 5 cut(s) 83, 458, 581, 899, 1012
Bse1I ACTGG 3 cut(s) 139, 403, 1089
Bse21I CCTNAGG 1 cut(s) 385
Bse3DI GCAATG 2 cut(s) 1038, 1122
BseAI TCCGGA 1 cut(s) 1136
BseBI CCWGG 5 cut(s) 327, 906, 1047, 1102, 1148
BseDI CCNNGG 5 cut(s) 721, 865, 905, 1046, 1101
BseGI GGATG 3 cut(s) 521, 1173, 1225
BseLI CCNNNNNNNGG 5 cut(s) 83, 458, 581, 899, 1012
BseMI GCAATG 2 cut(s) 1038, 1122
BseMII CTCAG 4 cut(s) 27, 71, 614, 690
BseNI ACTGG 3 cut(s) 139, 403, 1089
BseRI GAGGAG 1 cut(s) 477
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 5 cut(s) 160, 349, 824, 979, 1050
Bsh1285I CGRYCG 1 cut(s) 53
BshFI GGCC 3 cut(s) 87, 369, 451
BshNI GGYRCC 2 cut(s) 218, 322
BsiEI CGRYCG 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 313
BsiHKCI CYCGRG 2 cut(s) 722, 1010
BsiSI CCGG 3 cut(s) 170, 191, 1137
BslFI GGGAC 2 cut(s) 740, 922
BslI CCNNNNNNNGG 5 cut(s) 83, 458, 581, 899, 1012
BsmAI GTCTC 1 cut(s) 1238
BsmFI GGGAC 2 cut(s) 740, 922
BsnI GGCC 3 cut(s) 87, 369, 451
BsoBI CYCGRG 2 cut(s) 722, 1010
Bsp1286I GDGCHC 1 cut(s) 313
Bsp13I TCCGGA 1 cut(s) 1136
Bsp143I GATC 3 cut(s) 16, 1051, 1072
Bsp19I CCATGG 1 cut(s) 865
BspACI CCGC 4 cut(s) 53, 84, 342, 825
BspANI GGCC 3 cut(s) 87, 369, 451
BspCNI CTCAG 4 cut(s) 26, 72, 613, 689
BspEI TCCGGA 1 cut(s) 1136
BspLI GGNNCC 5 cut(s) 220, 324, 585, 1053, 1226
BspMAI CTGCAG 1 cut(s) 367
BspPI GGATC 3 cut(s) 1046, 1059, 1067
BspQI GCTCTTC 1 cut(s) 340
BspT107I GGYRCC 2 cut(s) 218, 322
BsrBI CCGCTC 1 cut(s) 84
BsrDI GCAATG 2 cut(s) 1038, 1122
BsrI ACTGG 3 cut(s) 139, 403, 1089
BssECI CCNNGG 5 cut(s) 721, 865, 905, 1046, 1101
BssMI GATC 3 cut(s) 16, 1051, 1072
BssNAI GTATAC 1 cut(s) 1157
BssT1I CCWWGG 1 cut(s) 865
Bst1107I GTATAC 1 cut(s) 1157
Bst2UI CCWGG 5 cut(s) 327, 906, 1047, 1102, 1148
Bst4CI ACNGT 7 cut(s) 241, 263, 511, 623, 804, 886, 1042
Bst6I CTCTTC 2 cut(s) 340, 783
BstC8I GCNNGC 3 cut(s) 367, 990, 1203
BstDEI CTNAG 6 cut(s) 13, 80, 385, 600, 676, 898
BstDSI CCRYGG 1 cut(s) 865
BstENI CCTNNNNNAGG 1 cut(s) 897
BstF5I GGATG 3 cut(s) 521, 1173, 1225
BstKTI GATC 3 cut(s) 19, 1054, 1075
BstMAI GTCTC 1 cut(s) 1238
BstMBI GATC 3 cut(s) 16, 1051, 1072
BstMCI CGRYCG 1 cut(s) 53
BstMWI GCNNNNNNNGC 5 cut(s) 200, 339, 645, 1097, 1207
BstNI CCWGG 5 cut(s) 327, 906, 1047, 1102, 1148
BstNSI RCATGY 1 cut(s) 716
BstPAI GACNNNNGTC 2 cut(s) 55, 900
BstSCI CCNGG 6 cut(s) 168, 325, 904, 1045, 1100, 1146
BstSFI CTRYAG 2 cut(s) 363, 1038
BstSLI GKGCMC 1 cut(s) 313
BstV1I GCAGC 5 cut(s) 160, 349, 824, 979, 1050
BstV2I GAAGAC 3 cut(s) 51, 624, 827
BstX2I RGATCY 2 cut(s) 1051, 1072
BstYI RGATCY 2 cut(s) 1051, 1072
BstZ17I GTATAC 1 cut(s) 1157
Bsu36I CCTNAGG 1 cut(s) 385
BsuRI GGCC 3 cut(s) 87, 369, 451
BtgI CCRYGG 1 cut(s) 865
BtgZI GCGATG 1 cut(s) 595
BtrI CACGTC 2 cut(s) 128, 1273
BtsCI GGATG 3 cut(s) 521, 1173, 1225
BtsIMutI CAGTG 3 cut(s) 396, 516, 1082
Cac8I GCNNGC 3 cut(s) 367, 990, 1203
Cfr13I GGNCC 2 cut(s) 584, 902
Csp6I GTAC 4 cut(s) 593, 665, 793, 882
CspCI CAANNNNNGTGG 2 cut(s) 211, 246
CviAII CATG 8 cut(s) 20, 68, 244, 458, 701, 713, 866, 1211
CviQI GTAC 4 cut(s) 593, 665, 793, 882
DdeI CTNAG 6 cut(s) 13, 80, 385, 600, 676, 898
DpnI GATC 3 cut(s) 18, 1053, 1074
DpnII GATC 3 cut(s) 16, 1051, 1072
DraIII CACNNNGTG 1 cut(s) 973
EaeI YGGCCR 1 cut(s) 449
Eam1104I CTCTTC 2 cut(s) 340, 783
EarI CTCTTC 2 cut(s) 340, 783
Eco130I CCWWGG 1 cut(s) 865
Eco147I AGGCCT 1 cut(s) 369
Eco47I GGWCC 2 cut(s) 584, 902
Eco81I CCTNAGG 1 cut(s) 385
Eco88I CYCGRG 2 cut(s) 722, 1010
EcoNI CCTNNNNNAGG 1 cut(s) 897
EcoO109I RGGNCCY 2 cut(s) 584, 902
EcoRI GAATTC 1 cut(s) 414
EcoRII CCWGG 5 cut(s) 325, 904, 1045, 1100, 1146
EcoT14I CCWWGG 1 cut(s) 865
ErhI CCWWGG 1 cut(s) 865
FaeI CATG 8 cut(s) 23, 71, 247, 461, 704, 716, 869, 1214
FaqI GGGAC 2 cut(s) 740, 922
FatI CATG 8 cut(s) 19, 67, 243, 457, 700, 712, 865, 1210
FblI GTMKAC 1 cut(s) 1156
Fnu4HI GCNGC 6 cut(s) 85, 174, 363, 813, 993, 1064
FokI GGATG 3 cut(s) 528, 1180, 1232
Fsp4HI GCNGC 6 cut(s) 85, 174, 363, 813, 993, 1064
FspBI CTAG 2 cut(s) 339, 1163
GluI GCNGC 6 cut(s) 85, 174, 363, 813, 993, 1064
GsuI CTGGAG 3 cut(s) 348, 420, 498
HaeIII GGCC 3 cut(s) 87, 369, 451
HapII CCGG 3 cut(s) 170, 191, 1137
Hin1II CATG 8 cut(s) 23, 71, 247, 461, 704, 716, 869, 1214
HincII GTYRAC 2 cut(s) 673, 942
HindII GTYRAC 2 cut(s) 673, 942
HindIII AAGCTT 1 cut(s) 751
HinfI GANTC 8 cut(s) 11, 145, 163, 179, 529, 674, 1140, 1246
HpaII CCGG 3 cut(s) 170, 191, 1137
HphI GGTGA 5 cut(s) 82, 158, 260, 881, 1162
Hpy166II GTNNAC 4 cut(s) 311, 673, 942, 1157
Hpy188I TCNGA 5 cut(s) 16, 50, 81, 890, 1219
Hpy188III TCNNGA 4 cut(s) 149, 477, 1137, 1276
Hpy8I GTNNAC 4 cut(s) 311, 673, 942, 1157
Hpy99I CGWCG 1 cut(s) 1277
HpyAV CCTTC 3 cut(s) 53, 83, 1016
HpyCH4III ACNGT 7 cut(s) 241, 263, 511, 623, 804, 886, 1042
HpyCH4IV ACGT 4 cut(s) 127, 729, 919, 1272
HpyCH4V TGCA 4 cut(s) 311, 365, 524, 1066
HpyF10VI GCNNNNNNNGC 5 cut(s) 200, 339, 645, 1097, 1207
HpyF3I CTNAG 6 cut(s) 13, 80, 385, 600, 676, 898
HpySE526I ACGT 4 cut(s) 127, 729, 919, 1272
Hsp92II CATG 8 cut(s) 23, 71, 247, 461, 704, 716, 869, 1214
Kpn2I TCCGGA 1 cut(s) 1136
Kzo9I GATC 3 cut(s) 16, 1051, 1072
LguI GCTCTTC 1 cut(s) 340
LmnI GCTCC 3 cut(s) 23, 193, 1088
Lsp1109I GCAGC 5 cut(s) 160, 349, 824, 979, 1050
MaeI CTAG 2 cut(s) 339, 1163
MaeII ACGT 4 cut(s) 127, 729, 919, 1272
MaeIII GTNAC 5 cut(s) 63, 130, 481, 561, 965
MalI GATC 3 cut(s) 18, 1053, 1074
MbiI CCGCTC 1 cut(s) 84
MboI GATC 3 cut(s) 16, 1051, 1072
MboII GAAGA 5 cut(s) 51, 327, 629, 800, 827
MfeI CAATTG 1 cut(s) 569
MflI RGATCY 2 cut(s) 1051, 1072
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 6 cut(s) 38, 414, 435, 569, 851, 983
MlyI GAGTC 4 cut(s) 5, 157, 668, 1240
MmeI TCCRAC 2 cut(s) 73, 532
MroI TCCGGA 1 cut(s) 1136
MroXI GAANNNNTTC 1 cut(s) 761
MseI TTAA 3 cut(s) 102, 605, 854
MspI CCGG 3 cut(s) 170, 191, 1137
MspR9I CCNGG 6 cut(s) 170, 327, 906, 1047, 1102, 1148
MunI CAATTG 1 cut(s) 569
MvaI CCWGG 5 cut(s) 327, 906, 1047, 1102, 1148
MwoI GCNNNNNNNGC 5 cut(s) 200, 339, 645, 1097, 1207
NciI CCSGG 1 cut(s) 170
NcoI CCATGG 1 cut(s) 865
NdeII GATC 3 cut(s) 16, 1051, 1072
NlaIII CATG 8 cut(s) 23, 71, 247, 461, 704, 716, 869, 1214
NlaIV GGNNCC 5 cut(s) 220, 324, 585, 1053, 1226
NmuCI GTSAC 3 cut(s) 63, 130, 965
NspI RCATGY 1 cut(s) 716
PceI AGGCCT 1 cut(s) 369
PciSI GCTCTTC 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 761
PfeI GAWTC 4 cut(s) 145, 179, 529, 1140
PflFI GACNNNGTC 1 cut(s) 731
PflMI CCANNNNNTGG 1 cut(s) 458
PkrI GCNGC 6 cut(s) 86, 175, 364, 814, 994, 1065
PleI GAGTC 4 cut(s) 5, 157, 668, 1240
PpsI GAGTC 4 cut(s) 5, 157, 668, 1240
PpuMI RGGWCCY 2 cut(s) 584, 902
PshAI GACNNNNGTC 2 cut(s) 55, 900
PsiI TTATAA 1 cut(s) 707
Psp5II RGGWCCY 2 cut(s) 584, 902
Psp6I CCWGG 5 cut(s) 325, 904, 1045, 1100, 1146
PspGI CCWGG 5 cut(s) 325, 904, 1045, 1100, 1146
PspN4I GGNNCC 5 cut(s) 220, 324, 585, 1053, 1226
PspPI GGNCC 2 cut(s) 584, 902
PspPPI RGGWCCY 2 cut(s) 584, 902
PstI CTGCAG 1 cut(s) 367
PsuI RGATCY 2 cut(s) 1051, 1072
PsyI GACNNNGTC 1 cut(s) 731
RsaI GTAC 4 cut(s) 594, 666, 794, 883
RsaNI GTAC 4 cut(s) 593, 665, 793, 882
SapI GCTCTTC 1 cut(s) 340
SaqAI TTAA 3 cut(s) 102, 605, 854
SatI GCNGC 6 cut(s) 85, 174, 363, 813, 993, 1064
Sau3AI GATC 3 cut(s) 16, 1051, 1072
Sau96I GGNCC 2 cut(s) 584, 902
ScaI AGTACT 1 cut(s) 666
SchI GAGTC 4 cut(s) 5, 157, 668, 1240
ScrFI CCNGG 6 cut(s) 170, 327, 906, 1047, 1102, 1148
SduI GDGCHC 1 cut(s) 313
SfcI CTRYAG 2 cut(s) 363, 1038
SinI GGWCC 2 cut(s) 584, 902
Sse9I AATT 6 cut(s) 38, 414, 435, 569, 851, 983
SseBI AGGCCT 1 cut(s) 369
SsiI CCGC 4 cut(s) 53, 84, 342, 825
SspI AATATT 1 cut(s) 207
SspMI CTAG 2 cut(s) 339, 1163
StuI AGGCCT 1 cut(s) 369
StyD4I CCNGG 6 cut(s) 168, 325, 904, 1045, 1100, 1146
StyI CCWWGG 1 cut(s) 865
TaaI ACNGT 7 cut(s) 241, 263, 511, 623, 804, 886, 1042
TaiI ACGT 4 cut(s) 130, 732, 922, 1275
TaqI TCGA 1 cut(s) 652
TaqII GACCGA 1 cut(s) 927
TasI AATT 6 cut(s) 38, 414, 435, 569, 851, 983
TatI WGTACW 3 cut(s) 664, 792, 881
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 4 cut(s) 145, 179, 529, 1140
Tru1I TTAA 3 cut(s) 102, 605, 854
Tru9I TTAA 3 cut(s) 102, 605, 854
TscAI CASTG 3 cut(s) 403, 516, 1089
TseFI GTSAC 3 cut(s) 63, 130, 965
TseI GCWGC 5 cut(s) 173, 362, 812, 992, 1063
Tsp45I GTSAC 3 cut(s) 63, 130, 965
TspDTI ATGAA 3 cut(s) 414, 864, 963
TspGWI ACGGA 2 cut(s) 294, 961
TspRI CASTG 3 cut(s) 403, 516, 1089
Tth111I GACNNNGTC 1 cut(s) 731
Van91I CCANNNNNTGG 1 cut(s) 458
VneI GTGCAC 1 cut(s) 309
VpaK11BI GGWCC 2 cut(s) 584, 902
XagI CCTNNNNNAGG 1 cut(s) 897
XapI RAATTY 3 cut(s) 38, 414, 435
XceI RCATGY 1 cut(s) 716
XmiI GTMKAC 1 cut(s) 1156
XmnI GAANNNNTTC 1 cut(s) 761
XspI CTAG 2 cut(s) 339, 1163
ZrmI AGTACT 1 cut(s) 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.