Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001680

Physical Location & Seq

Genomic Coordinates Forward (+)

4569615 .. 4579902

Gene Structure 10288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42144

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCGAACACTCCTAAGGCATGAATTCAAGAACAACCATGGTGAATGGGTCATTACAGTCAGACCTGATTTAGGTCCTGGGATATCAGAACGTGTATGGGAAGCTGTCAGGGCAGCAGATGAAAATACCGGTGTTTATCACTCCGTGAAGTCCGAACTATGTGCTGCGCTTACTGAACTTCTTGGGGATGCTGGTGTCCTTGCAATTCCTACAGTTCCAGGGCCTCCACCAAAACTACAAATGGATCCTGCTACACTTGAAACATTTCGCGCCAGGGCTTTTAGCTTGTTGTCCATTGCCGGAGTATCTGGATTCTGCAAGGTGAACATACCACTAGGCATGTACAAAGATCTACCTGTGTCGGTTTCCTTACTGGCAAAGCACGGCTCGGATGGATTCCTGCTGAGTCTTGTAGAGACTCTCTATGCCACTCTCAAAGAACAAGTTGAAAGCTTGAAATCGCATCCTTGTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004040 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016053 GO:0016787 GO:0016810 GO:0016811 GO:0018130 GO:0019438 GO:0019752 GO:0031974 GO:0031981 GO:0032787 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043864 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00360 ko00380 ko00627 ko00643 ko01120 map00330 map00360 map00380 map00627 map00643 map01120

Pfam Domains

Protein Families

Amidase

Protein Analysis

158

Amino Acids

17.13

Weight (kDa)

6.19

Isoelectric Point (pI)

25.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08980
fragaria_vesca	FvH4_6g05640 FvH4_6g05640 FvH4_6g05640 FvH4_6g05640
malus_domestica	MD00G1147100.v1.1 MD00G1147200.v1.1 MD00G1192400.v1.1 MD04G1207000.v1.1 MD12G1220800.v1.1 MD12G1220900.v1.1 MD12G1221100.v1.1
prunus_persica	Prupe.6G327700_v2.0.a1 Prupe.6G327700_v2.0.a1
pyrus_communis	pycom04g18300 pycom12g20660 pycom12g20670 pycom12g20680 pycom12g20700 pycom12g20710 pycom12g20760
rosa_chinensis	RchiOBHm_Chr3g0454411 RchiOBHm_Chr3g0454431 RchiOBHm_Chr3g0454461 RchiOBHm_Chr3g0454491
rosa_laevigata	RLG00000025440 RLG00000025441 RLG00000025442
rosa_multiflora	Rmu_sc0007209.1_g000005 Rmu_sc0026738.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425030 Rroxscaffold_6G00425050
rosa_rugosa	Rorug02G0654600 Rorug02G0654700
rosa_samantha	Rh1BG006800 Rh3AG058700 Rh3AG059100 Rh3AG059200 Rh3BG060700 Rh3BG061100 Rh3BG061300 Rh3CG059500 Rh3CG059900 Rh3CG060100 Rh3DG060800 Rh3DG061000
rosa_wichuraiana	Rw3G004570 Rw3G004580 Rw3G004590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	475
AccII	CGCG	1 cut(s)	270
AclWI	GGATC	2 cut(s)	239, 252
AcsI	RAATTY	1 cut(s)	23
AdeI	CACNNNGTG	1 cut(s)	145
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	71
AflIII	ACRYGT	1 cut(s)	91
AgeI	ACCGGT	1 cut(s)	128
AgsI	TTSAA	4 cut(s)	28, 260, 449, 457
AjnI	CCWGG	3 cut(s)	76, 217, 272
AluBI	AGCT	3 cut(s)	104, 285, 453
AluI	AGCT	3 cut(s)	104, 285, 453
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	2 cut(s)	239, 252
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	2 cut(s)	113, 164
ApoI	RAATTY	1 cut(s)	23
AsiGI	ACCGGT	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	264
AspLEI	GCGC	2 cut(s)	169, 272
AspS9I	GGNCC	2 cut(s)	74, 221
AsuHPI	GGTGA	2 cut(s)	53, 334
AvaII	GGWCC	1 cut(s)	74
AxyI	CCTNAGG	1 cut(s)	14
BamHI	GGATCC	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	125, 151
BccI	CCATC	1 cut(s)	386
BceAI	ACGGC	1 cut(s)	400
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BciT130I	CCWGG	3 cut(s)	78, 219, 274
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	210
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	2 cut(s)	114, 165
BlsI	GCNGC	2 cut(s)	115, 166
Bme1390I	CCNGG	3 cut(s)	78, 219, 274
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	2 cut(s)	74, 221
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	3 cut(s)	78, 219, 274
BmsI	GCATC	2 cut(s)	178, 472
BsaJI	CCNNGG	4 cut(s)	37, 77, 218, 273
BsaWI	WCCGGW	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	378
Bse21I	CCTNAGG	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	294
BseBI	CCWGG	3 cut(s)	78, 219, 274
BseDI	CCNNGG	4 cut(s)	37, 77, 218, 273
BseGI	GGATG	3 cut(s)	193, 397, 463
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	1 cut(s)	378
BseXI	GCAGC	2 cut(s)	125, 151
Bsh1236I	CGCG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	223
BshTI	ACCGGT	1 cut(s)	128
BsiSI	CCGG	2 cut(s)	129, 300
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	223
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	2 cut(s)	244, 349
Bsp19I	CCATGG	1 cut(s)	37
BspANI	GGCC	1 cut(s)	223
BspCNI	CTCAG	1 cut(s)	396
BspFNI	CGCG	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	246
BspPI	GGATC	2 cut(s)	239, 252
BsrDI	GCAATG	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	128
BsrGI	TGTACA	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	378
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	4 cut(s)	37, 77, 218, 273
BssMI	GATC	2 cut(s)	244, 349
BssT1I	CCWWGG	1 cut(s)	37
Bst2UI	CCWGG	3 cut(s)	78, 219, 274
Bst4CI	ACNGT	2 cut(s)	58, 214
BstAUI	TGTACA	1 cut(s)	342
BstDEI	CTNAG	2 cut(s)	14, 404
BstDSI	CCRYGG	1 cut(s)	37
BstENI	CCTNNNNNAGG	1 cut(s)	69
BstF5I	GGATG	3 cut(s)	193, 397, 463
BstFNI	CGCG	1 cut(s)	270
BstHHI	GCGC	2 cut(s)	169, 272
BstKTI	GATC	2 cut(s)	247, 352
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	2 cut(s)	244, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	3 cut(s)	78, 219, 274
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	3 cut(s)	76, 217, 272
BstSFI	CTRYAG	1 cut(s)	210
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	125, 151
BstX2I	RGATCY	2 cut(s)	244, 349
BstYI	RGATCY	2 cut(s)	244, 349
Bsu36I	CCTNAGG	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	223
BtgI	CCRYGG	1 cut(s)	37
BtsCI	GGATG	3 cut(s)	193, 397, 463
CfoI	GCGC	2 cut(s)	169, 272
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	2 cut(s)	74, 221
Csp6I	GTAC	1 cut(s)	343
CspAI	ACCGGT	1 cut(s)	128
CviAII	CATG	3 cut(s)	20, 38, 340
CviJI	RGCY	6 cut(s)	104, 223, 278, 285, 387, 453
CviKI_1	RGCY	6 cut(s)	104, 223, 278, 285, 387, 453
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	2 cut(s)	14, 404
DpnI	GATC	2 cut(s)	246, 351
DpnII	GATC	2 cut(s)	244, 349
DraIII	CACNNNGTG	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	37
Eco32I	GATATC	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	74
Eco81I	CCTNAGG	1 cut(s)	14
EcoNI	CCTNNNNNAGG	1 cut(s)	69
EcoO109I	RGGNCCY	2 cut(s)	74, 221
EcoRI	GAATTC	1 cut(s)	23
EcoRII	CCWGG	3 cut(s)	76, 217, 272
EcoRV	GATATC	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	3 cut(s)	23, 41, 343
FaiI	YATR	8 cut(s)	21, 39, 97, 160, 329, 341, 426, 475
FatI	CATG	3 cut(s)	19, 37, 339
Fnu4HI	GCNGC	2 cut(s)	114, 165
FokI	GGATG	3 cut(s)	200, 404, 450
Fsp4HI	GCNGC	2 cut(s)	114, 165
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	2 cut(s)	168, 271
GluI	GCNGC	2 cut(s)	114, 165
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	2 cut(s)	129, 300
HhaI	GCGC	2 cut(s)	169, 272
Hin1II	CATG	3 cut(s)	23, 41, 343
Hin6I	GCGC	2 cut(s)	167, 270
HinP1I	GCGC	2 cut(s)	167, 270
HindIII	AAGCTT	1 cut(s)	451
HinfI	GANTC	4 cut(s)	312, 396, 406, 418
HpaII	CCGG	2 cut(s)	129, 300
HphI	GGTGA	2 cut(s)	53, 334
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	4 cut(s)	62, 88, 154, 391
Hpy188III	TCNNGA	2 cut(s)	28, 309
Hpy8I	GTNNAC	1 cut(s)	325
HpyCH4III	ACNGT	2 cut(s)	58, 214
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	2 cut(s)	203, 318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	2 cut(s)	14, 404
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	3 cut(s)	23, 41, 343
HspAI	GCGC	2 cut(s)	167, 270
Kzo9I	GATC	2 cut(s)	244, 349
Lsp1109I	GCAGC	2 cut(s)	125, 151
LweI	GCATC	2 cut(s)	178, 472
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	1 cut(s)	91
MalI	GATC	2 cut(s)	246, 351
MboI	GATC	2 cut(s)	244, 349
MflI	RGATCY	2 cut(s)	244, 349
MluCI	AATT	2 cut(s)	23, 204
MlyI	GAGTC	2 cut(s)	412, 415
MnlI	CCTC	1 cut(s)	234
MroXI	GAANNNNTTC	1 cut(s)	264
MspI	CCGG	2 cut(s)	129, 300
MspR9I	CCNGG	3 cut(s)	78, 219, 274
MvaI	CCWGG	3 cut(s)	78, 219, 274
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	110
NcoI	CCATGG	1 cut(s)	37
NdeII	GATC	2 cut(s)	244, 349
NlaIII	CATG	3 cut(s)	23, 41, 343
NlaIV	GGNNCC	1 cut(s)	246
NspI	RCATGY	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	312, 396
PinAI	ACCGGT	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	115, 166
PleI	GAGTC	2 cut(s)	412, 414
PpsI	GAGTC	2 cut(s)	412, 414
PpuMI	RGGWCCY	1 cut(s)	74
PsiI	TTATAA	1 cut(s)	475
Psp5II	RGGWCCY	1 cut(s)	74
Psp6I	CCWGG	3 cut(s)	76, 217, 272
PspGI	CCWGG	3 cut(s)	76, 217, 272
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	2 cut(s)	74, 221
PspPPI	RGGWCCY	1 cut(s)	74
PsuI	RGATCY	2 cut(s)	244, 349
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SatI	GCNGC	2 cut(s)	114, 165
Sau3AI	GATC	2 cut(s)	244, 349
Sau96I	GGNCC	2 cut(s)	74, 221
SchI	GAGTC	2 cut(s)	412, 415
ScrFI	CCNGG	3 cut(s)	78, 219, 274
SetI	ASST	8 cut(s)	67, 76, 94, 106, 287, 324, 358, 455
SfaNI	GCATC	2 cut(s)	178, 472
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	74
Sse9I	AATT	2 cut(s)	23, 204
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	3 cut(s)	76, 217, 272
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	2 cut(s)	58, 214
TaiI	ACGT	1 cut(s)	94
TasI	AATT	2 cut(s)	23, 204
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	2 cut(s)	312, 396
TseI	GCWGC	2 cut(s)	113, 164
TspDTI	ATGAA	2 cut(s)	36, 135
TspGWI	ACGGA	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	74
XagI	CCTNNNNNAGG	1 cut(s)	69
XapI	RAATTY	1 cut(s)	23
XceI	RCATGY	1 cut(s)	343
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.