AT1G08980

Amidase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
2884351 .. 2886621
2271 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08980.1

Sequence Viewer

Length: 1278 bp
ATGGCGACCAATAATGATTTTGGAGCTTTCATTGAGAAAGTTACAATCTCTCCAACTTCTACTTCCTCGTCGCCTCCTTCTCTACAGGGTCTTACTTTCGCCATTAAAGACATTTTTGATGTGGAAGGACGCGTTACCGGTTTTGGTAACCCGGATTGGTTAAGGACACACTCGGCAGCTACTTCTACAGCTCCAGTAGTTTCATCTCTCTTAGAAGCTGGTGCCACAGCTTTGGGTATTACCATTATGGATGAAATGGCTTACAGTATAAACGGAGAAAATGCGCATTATGGGACTCCGAGAAACCCGATTGCTTTCGATAGAGTGCCTGGGGGATCATCGAGTGGCTCAGCCGTAGCTGTAGCTGCTCGTCTTGTGGATTTTTCTATTGGAACTGATACCGGAGGGAGTGTACGAGTTCCAGCATCTTACTGTGGGATTTTCGGTTTCCGGCCATCCCACGGTGCAGTTTCCACTGTCGGACTTACTCCAATGGCTCAGAGCTTCGACACAGTTGGATGGTTTGCTCGGGACACAGCCACTTTGAAACGTGTAGGTTGCGTTCTCCTGCAGCAGCATCACTTGAACCCCATCGAACCATCTCAACTGATTATCGCGGATGACTGCTTCAAGCTGTGTAGTGTACCGCATGATCTCTTGGTGCAGCCTCTGGTTGGATCCGTGGAAAAATCGTTTGGAGGCAACACTGTAGTAAAGAAGGTGAATCTTGGAGAGTACATTGGACAGAATGTTCCAAGCCTTAAACATTTCATGACAAGTGACGATGTCACTACACAACAAGAGTTCTGCATTCCGTCTCTCATGGCCCTATCGAGTTCAATGAGATTGTTACAAAGACATGAATTCAAGATAAACCACGGTGCATGGATCTCGTCGGTGAAGCCAGAGTTTGGTCCTGGAATATCAGAACGAATTGAGGAAGCTATCAGAACATCCGACGAGAAGATCGACCATTGCCGGTCCGTGAAATCTGAACTGATAACGGCTCTTTCAACTTTGCTCGGGGAGAAGGGTGTGTTGGTGATTCCAACGGTACCAGGTCCTCCACCGCATCTCCAAGCTAATGTGGCTGCACTTGAATCTTTCCGCAGCAGAGCCTTCAGCTTGTTGTCGATCGCAGGCGTTTCTGGATTCTGTCAGGTGAGCATACCATTGGGGCTACACGAAAATCTTCCGGTTTCGGTATCATTGGTAGCTAAGTATGGCTCAGACGGTTTTCTTCTGAGTCTTGTGGATTCCCTTGCTGCATTTATTTGA

Protein Analysis

425

Amino Acids

45.06

Weight (kDa)

5.83

Isoelectric Point (pI)

32.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Amidase PF01425 23 - 194 4.7e-52 Amidase
Amidase PF01425 298 - 415 6.5e-06 Amidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 285
Acc65I GGTACC 1 cut(s) 1054
AccB1I GGYRCC 2 cut(s) 221, 1054
AccB7I CCANNNNNTGG 1 cut(s) 911
AccII CGCG 2 cut(s) 132, 617
AciI CCGC 4 cut(s) 617, 647, 1070, 1108
AclWI GGATC 4 cut(s) 343, 672, 685, 896
AcoI YGGCCR 1 cut(s) 452
AcsI RAATTY 1 cut(s) 863
AcuI CTGAAG 1 cut(s) 1105
AfaI GTAC 4 cut(s) 414, 645, 737, 1056
AfiI CCNNNNNNNGG 3 cut(s) 461, 674, 911
AflIII ACRYGT 2 cut(s) 130, 550
AgeI ACCGGT 1 cut(s) 137
AgsI TTSAA 7 cut(s) 547, 586, 631, 840, 868, 1014, 1100
AjnI CCWGG 3 cut(s) 328, 916, 1057
AjuI GAANNNNNNNTTGG 6 cut(s) 46, 78, 678, 710, 1022, 1054
AloI GAACNNNNNNTCC 2 cut(s) 735, 767
Alw26I GTCTC 1 cut(s) 822
AlwI GGATC 4 cut(s) 343, 672, 685, 896
AlwNI CAGNNNCTG 1 cut(s) 670
Ama87I CYCGRG 2 cut(s) 528, 1022
AoxI GGCC 2 cut(s) 452, 825
ApeKI GCWGC 8 cut(s) 176, 365, 571, 574, 664, 1091, 1110, 1265
ApoI RAATTY 1 cut(s) 863
AsiGI ACCGGT 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 1191
Asp718I GGTACC 1 cut(s) 1054
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 4 cut(s) 826, 914, 981, 1061
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 4 cut(s) 733, 910, 1054, 1174
AvaI CYCGRG 2 cut(s) 528, 1022
AvaII GGWCC 3 cut(s) 914, 981, 1061
BamHI GGATCC 1 cut(s) 677
BanI GGYRCC 2 cut(s) 221, 1054
BbvI GCAGC 8 cut(s) 188, 352, 583, 586, 676, 1078, 1122, 1252
BccI CCATC 4 cut(s) 463, 513, 599, 607
BceAI ACGGC 2 cut(s) 338, 1020
BcgI CGANNNNNNTGC 2 cut(s) 873, 907
BciT130I CCWGG 3 cut(s) 330, 918, 1059
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 822
BfmI CTRYAG 5 cut(s) 83, 186, 360, 569, 708
BisI GCNGC 8 cut(s) 177, 366, 572, 575, 665, 1092, 1111, 1266
BlpI GCTNAGC 1 cut(s) 349
BlsI GCNGC 8 cut(s) 178, 367, 573, 576, 666, 1093, 1112, 1267
Bme1390I CCNGG 4 cut(s) 152, 330, 918, 1059
Bme18I GGWCC 3 cut(s) 914, 981, 1061
BmeT110I CYCGRG 2 cut(s) 528, 1022
BmgT120I GGNCC 4 cut(s) 826, 914, 981, 1061
BmiI GGNNCC 3 cut(s) 223, 679, 1056
BmrFI CCNGG 4 cut(s) 152, 330, 918, 1059
BmsI GCATC 3 cut(s) 434, 586, 1081
BpmI CTGGAG 1 cut(s) 177
Bpu1102I GCTNAGC 1 cut(s) 349
BpuMI CCSGG 1 cut(s) 152
BsaJI CCNNGG 4 cut(s) 329, 460, 681, 877
BsaWI WCCGGW 3 cut(s) 137, 401, 1195
BsaXI ACNNNNNCTCC 6 cut(s) 34, 64, 396, 426, 1059, 1089
Bsc4I CCNNNNNNNGG 3 cut(s) 461, 674, 911
Bse118I RCCGGY 2 cut(s) 137, 978
Bse1I ACTGG 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 973
BseBI CCWGG 3 cut(s) 330, 918, 1059
BseDI CCNNGG 4 cut(s) 329, 460, 681, 877
BseGI GGATG 5 cut(s) 256, 455, 524, 625, 953
BseLI CCNNNNNNNGG 3 cut(s) 461, 674, 911
BseMI GCAATG 1 cut(s) 973
BseMII CTCAG 4 cut(s) 363, 512, 1235, 1242
BseNI ACTGG 1 cut(s) 194
BseXI GCAGC 8 cut(s) 188, 352, 583, 586, 676, 1078, 1122, 1252
BsgI GTGCAG 3 cut(s) 486, 683, 1077
Bsh1236I CGCG 2 cut(s) 132, 617
Bsh1285I CGRYCG 1 cut(s) 1137
BshFI GGCC 2 cut(s) 454, 827
BshNI GGYRCC 2 cut(s) 221, 1054
BshTI ACCGGT 1 cut(s) 137
BsiEI CGRYCG 1 cut(s) 1137
BsiHKCI CYCGRG 2 cut(s) 528, 1022
BsiSI CCGG 6 cut(s) 138, 152, 402, 451, 979, 1196
BslFI GGGAC 2 cut(s) 307, 545
BslI CCNNNNNNNGG 3 cut(s) 461, 674, 911
BsmAI GTCTC 1 cut(s) 822
BsmBI CGTCTC 1 cut(s) 822
BsmFI GGGAC 2 cut(s) 307, 545
BsmI GAATGC 1 cut(s) 810
BsnI GGCC 2 cut(s) 454, 827
BsoBI CYCGRG 2 cut(s) 528, 1022
Bsp143I GATC 6 cut(s) 335, 652, 677, 888, 966, 1134
Bsp1720I GCTNAGC 1 cut(s) 349
BspACI CCGC 4 cut(s) 617, 647, 1070, 1108
BspANI GGCC 2 cut(s) 454, 827
BspCNI CTCAG 4 cut(s) 362, 511, 1236, 1241
BspFNI CGCG 2 cut(s) 132, 617
BspHI TCATGA 1 cut(s) 771
BspLI GGNNCC 3 cut(s) 223, 679, 1056
BspMAI CTGCAG 1 cut(s) 573
BspPI GGATC 4 cut(s) 343, 672, 685, 896
BspT107I GGYRCC 2 cut(s) 221, 1054
BsrDI GCAATG 1 cut(s) 973
BsrFI RCCGGY 2 cut(s) 137, 978
BsrI ACTGG 1 cut(s) 194
BssAI RCCGGY 2 cut(s) 137, 978
BssECI CCNNGG 4 cut(s) 329, 460, 681, 877
BssMI GATC 6 cut(s) 335, 652, 677, 888, 966, 1134
Bst2UI CCWGG 3 cut(s) 330, 918, 1059
Bst4CI ACNGT 9 cut(s) 266, 434, 464, 478, 514, 709, 881, 1054, 1235
BstC8I GCNNGC 1 cut(s) 1141
BstDEI CTNAG 6 cut(s) 211, 349, 498, 1218, 1228, 1244
BstDSI CCRYGG 3 cut(s) 460, 681, 877
BstEII GGTNACC 1 cut(s) 146
BstF5I GGATG 5 cut(s) 256, 455, 524, 625, 953
BstFNI CGCG 2 cut(s) 132, 617
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 6 cut(s) 338, 655, 680, 891, 969, 1137
BstMAI GTCTC 1 cut(s) 822
BstMBI GATC 6 cut(s) 335, 652, 677, 888, 966, 1134
BstMCI CGRYCG 1 cut(s) 1137
BstMWI GCNNNNNNNGC 2 cut(s) 365, 1088
BstNI CCWGG 3 cut(s) 330, 918, 1059
BstPI GGTNACC 1 cut(s) 146
BstSCI CCNGG 4 cut(s) 150, 328, 916, 1057
BstSFI CTRYAG 5 cut(s) 83, 186, 360, 569, 708
BstUI CGCG 2 cut(s) 132, 617
BstV1I GCAGC 8 cut(s) 188, 352, 583, 586, 676, 1078, 1122, 1252
BstX2I RGATCY 2 cut(s) 677, 888
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 2 cut(s) 677, 888
BsuRI GGCC 2 cut(s) 454, 827
BtgI CCRYGG 3 cut(s) 460, 681, 877
BtsCI GGATG 5 cut(s) 256, 455, 524, 625, 953
BtsIMutI CAGTG 2 cut(s) 474, 705
Cac8I GCNNGC 1 cut(s) 1141
CaiI CAGNNNCTG 1 cut(s) 670
CciI TCATGA 1 cut(s) 771
CfoI GCGC 1 cut(s) 286
Cfr10I RCCGGY 2 cut(s) 137, 978
Cfr13I GGNCC 4 cut(s) 826, 914, 981, 1061
CpoI CGGWCCG 1 cut(s) 981
CseI GACGC 1 cut(s) 138
CsiI ACCWGGT 1 cut(s) 1057
Csp6I GTAC 4 cut(s) 413, 644, 736, 1055
CspAI ACCGGT 1 cut(s) 137
CspI CGGWCCG 1 cut(s) 981
CviAII CATG 5 cut(s) 650, 772, 823, 860, 885
CviQI GTAC 4 cut(s) 413, 644, 736, 1055
DdeI CTNAG 6 cut(s) 211, 349, 498, 1218, 1228, 1244
DpnI GATC 6 cut(s) 337, 654, 679, 890, 968, 1136
DpnII GATC 6 cut(s) 335, 652, 677, 888, 966, 1134
EaeI YGGCCR 1 cut(s) 452
Eco47I GGWCC 3 cut(s) 914, 981, 1061
Eco57I CTGAAG 1 cut(s) 1105
Eco88I CYCGRG 2 cut(s) 528, 1022
Eco91I GGTNACC 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 1061
EcoO65I GGTNACC 1 cut(s) 146
EcoRI GAATTC 1 cut(s) 863
EcoRII CCWGG 3 cut(s) 328, 916, 1057
Esp3I CGTCTC 1 cut(s) 822
FaeI CATG 5 cut(s) 653, 775, 826, 863, 888
FaqI GGGAC 2 cut(s) 307, 545
FatI CATG 5 cut(s) 649, 771, 822, 859, 884
Fnu4HI GCNGC 8 cut(s) 177, 366, 572, 575, 665, 1092, 1111, 1266
FokI GGATG 5 cut(s) 263, 442, 531, 632, 940
Fsp4HI GCNGC 8 cut(s) 177, 366, 572, 575, 665, 1092, 1111, 1266
FspAI RTGCGCAY 1 cut(s) 285
FspI TGCGCA 1 cut(s) 285
GlaI GCGC 1 cut(s) 285
GluI GCNGC 8 cut(s) 177, 366, 572, 575, 665, 1092, 1111, 1266
GsuI CTGGAG 1 cut(s) 177
HaeIII GGCC 2 cut(s) 454, 827
HapII CCGG 6 cut(s) 138, 152, 402, 451, 979, 1196
HgaI GACGC 1 cut(s) 138
HhaI GCGC 1 cut(s) 286
Hin1II CATG 5 cut(s) 653, 775, 826, 863, 888
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HinfI GANTC 7 cut(s) 295, 724, 1045, 1100, 1152, 1246, 1256
HpaII CCGG 6 cut(s) 138, 152, 402, 451, 979, 1196
HphI GGTGA 4 cut(s) 733, 910, 1054, 1174
Hpy166II GTNNAC 2 cut(s) 413, 644
Hpy188I TCNGA 9 cut(s) 300, 482, 501, 928, 950, 958, 994, 1231, 1245
Hpy188III TCNNGA 4 cut(s) 530, 772, 868, 1149
Hpy8I GTNNAC 2 cut(s) 413, 644
Hpy99I CGWCG 3 cut(s) 73, 898, 962
HpyAV CCTTC 5 cut(s) 87, 119, 712, 1024, 1129
HpyCH4III ACNGT 9 cut(s) 266, 434, 464, 478, 514, 709, 881, 1054, 1235
HpyCH4IV ACGT 1 cut(s) 550
HpyCH4V TGCA 7 cut(s) 467, 571, 664, 810, 884, 1094, 1268
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 1088
HpyF3I CTNAG 6 cut(s) 211, 349, 498, 1218, 1228, 1244
HpySE526I ACGT 1 cut(s) 550
Hsp92II CATG 5 cut(s) 653, 775, 826, 863, 888
HspAI GCGC 1 cut(s) 284
KpnI GGTACC 1 cut(s) 1058
Kzo9I GATC 6 cut(s) 335, 652, 677, 888, 966, 1134
LmnI GCTCC 2 cut(s) 23, 196
Lsp1109I GCAGC 8 cut(s) 188, 352, 583, 586, 676, 1078, 1122, 1252
LweI GCATC 3 cut(s) 434, 586, 1081
MabI ACCWGGT 1 cut(s) 1057
MaeII ACGT 1 cut(s) 550
MaeIII GTNAC 6 cut(s) 40, 133, 146, 779, 787, 849
MalI GATC 6 cut(s) 337, 654, 679, 890, 968, 1136
MboI GATC 6 cut(s) 335, 652, 677, 888, 966, 1134
MboII GAAGA 3 cut(s) 976, 1184, 1232
MflI RGATCY 2 cut(s) 677, 888
MluCI AATT 2 cut(s) 863, 933
MluI ACGCGT 1 cut(s) 130
MlyI GAGTC 2 cut(s) 289, 1255
MmeI TCCRAC 6 cut(s) 77, 460, 496, 655, 981, 1073
MnlI CCTC 7 cut(s) 76, 84, 398, 678, 692, 931, 1074
MroXI GAANNNNTTC 1 cut(s) 1191
MseI TTAA 3 cut(s) 105, 161, 762
MspI CCGG 6 cut(s) 138, 152, 402, 451, 979, 1196
MspR9I CCNGG 4 cut(s) 152, 330, 918, 1059
Mva1269I GAATGC 1 cut(s) 810
MvaI CCWGG 3 cut(s) 330, 918, 1059
MvnI CGCG 2 cut(s) 132, 617
MwoI GCNNNNNNNGC 2 cut(s) 365, 1088
NciI CCSGG 1 cut(s) 152
NdeII GATC 6 cut(s) 335, 652, 677, 888, 966, 1134
NlaIII CATG 5 cut(s) 653, 775, 826, 863, 888
NlaIV GGNNCC 3 cut(s) 223, 679, 1056
NmeAIII GCCGAG 1 cut(s) 152
NmuCI GTSAC 2 cut(s) 779, 787
NsbI TGCGCA 1 cut(s) 285
PagI TCATGA 1 cut(s) 771
PcsI WCGNNNNNNNCGW 1 cut(s) 966
PctI GAATGC 1 cut(s) 810
PdmI GAANNNNTTC 1 cut(s) 1191
PfeI GAWTC 5 cut(s) 724, 1045, 1100, 1152, 1256
PflFI GACNNNGTC 1 cut(s) 785
PflMI CCANNNNNTGG 1 cut(s) 911
PfoI TCCNGGA 1 cut(s) 916
PinAI ACCGGT 1 cut(s) 137
PkrI GCNGC 8 cut(s) 178, 367, 573, 576, 666, 1093, 1112, 1267
Ple19I CGATCG 1 cut(s) 1137
PleI GAGTC 2 cut(s) 289, 1254
PpsI GAGTC 2 cut(s) 289, 1254
PpuMI RGGWCCY 1 cut(s) 1061
Psp5II RGGWCCY 1 cut(s) 1061
Psp6I CCWGG 3 cut(s) 328, 916, 1057
PspEI GGTNACC 1 cut(s) 146
PspGI CCWGG 3 cut(s) 328, 916, 1057
PspN4I GGNNCC 3 cut(s) 223, 679, 1056
PspPI GGNCC 4 cut(s) 826, 914, 981, 1061
PspPPI RGGWCCY 1 cut(s) 1061
PsrI GAACNNNNNNTAC 2 cut(s) 546, 578
PstI CTGCAG 1 cut(s) 573
PstNI CAGNNNCTG 1 cut(s) 670
PsuI RGATCY 2 cut(s) 677, 888
PsyI GACNNNGTC 1 cut(s) 785
PvuI CGATCG 1 cut(s) 1137
RsaI GTAC 4 cut(s) 414, 645, 737, 1056
RsaNI GTAC 4 cut(s) 413, 644, 736, 1055
Rsr2I CGGWCCG 1 cut(s) 981
RsrII CGGWCCG 1 cut(s) 981
SaqAI TTAA 3 cut(s) 105, 161, 762
SatI GCNGC 8 cut(s) 177, 366, 572, 575, 665, 1092, 1111, 1266
Sau3AI GATC 6 cut(s) 335, 652, 677, 888, 966, 1134
Sau96I GGNCC 4 cut(s) 826, 914, 981, 1061
SchI GAGTC 2 cut(s) 289, 1255
ScrFI CCNGG 4 cut(s) 152, 330, 918, 1059
SexAI ACCWGGT 1 cut(s) 1057
SfaNI GCATC 3 cut(s) 434, 586, 1081
SfcI CTRYAG 5 cut(s) 83, 186, 360, 569, 708
SinI GGWCC 3 cut(s) 914, 981, 1061
Sse9I AATT 2 cut(s) 863, 933
SsiI CCGC 4 cut(s) 617, 647, 1070, 1108
StyD4I CCNGG 4 cut(s) 150, 328, 916, 1057
TaaI ACNGT 9 cut(s) 266, 434, 464, 478, 514, 709, 881, 1054, 1235
TaiI ACGT 1 cut(s) 553
TaqI TCGA 7 cut(s) 318, 341, 507, 594, 833, 969, 1133
TasI AATT 2 cut(s) 863, 933
TatI WGTACW 1 cut(s) 735
TfiI GAWTC 5 cut(s) 724, 1045, 1100, 1152, 1256
Tru1I TTAA 3 cut(s) 105, 161, 762
Tru9I TTAA 3 cut(s) 105, 161, 762
TscAI CASTG 2 cut(s) 481, 712
TseFI GTSAC 2 cut(s) 779, 787
TseI GCWGC 8 cut(s) 176, 365, 571, 574, 664, 1091, 1110, 1265
Tsp45I GTSAC 2 cut(s) 779, 787
TspDTI ATGAA 5 cut(s) 19, 192, 267, 760, 876
TspGWI ACGGA 4 cut(s) 288, 670, 804, 973
TspRI CASTG 2 cut(s) 481, 712
Tth111I GACNNNGTC 1 cut(s) 785
Van91I CCANNNNNTGG 1 cut(s) 911
VpaK11BI GGWCC 3 cut(s) 914, 981, 1061
XapI RAATTY 1 cut(s) 863
XmnI GAANNNNTTC 1 cut(s) 1191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.