Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001680

Physical Location & Seq

Genomic Coordinates Forward (+)

76170820 .. 76172076

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0654600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCGGAGGACATGGCCTCAAGGTTGGCGGCTGCTTTAGCCCTGACGGAGGACGCGGTGGTTAATTTGGAGGTAATAGGCTCGACGGTAGTAGCGGATGAATACTTCTACTTAGTAGGTCGTCTGGTTCATAGAAAGGAGAGTGATGACAAGGGTCTCCCAGGCACCCTTTCTGCCATTTGGGGACTTGGGGACCGTCTGGCTATATTGGAGGCAGGAGGAGGACCTTTTCTTTCCCGATTTCGGTGCAAGGAAGAATGCAATAAGCTTTTGCATAGGGGTCCTTGGTTTTTCAATGGTCATATGCTCCTCCTTGGGGAGTACTATGGTCTATCGGAGATTGATGGGATTCCACTGCAGTCCTTAAAGAATTGGGTGACAGTACGACATCTACCGCCGCGTTTAAAGACAGAGGAATCACTCATTCTAATTGGATTGTCAATGGGGCGCTTTCTCCAATCTAATCAGGCTGACAAGTTACACAGGCTAGAGGAGCTTAGGGTTTCGGAGCCAAACCCTGCTAGACGTGAAGGACCGGCTTTCTCGTCGAAGGTTGTTGTTATTCTGAGAGGCCCTAAGGTTTCTAGGAACCCTAAAATTTCTTTTGCAAGGACCAGAGATGCCCTTGTGAATCCAGCGACGCTGCATGGCAACACGGGAAAGGGTTTGGGGTCTCTGGACTCGAAGGCTTTGTTGGTGAGTGGGATGTCGAAAAGAAAGAAAGCTCAGAGCGAGGACATTTTTCCTCGAACTGCACCAGGTTGCTCCTATGCTATAACCCCTATTGCTAGAGCGGCTGTCCCTTCTGTGCAGCTAAGCAACTCTTCAAGTATTATAGTTGAAGCTTCACCGGCCCTTACTTTGTTAATCAAAATGGTGGGATTTTCTTTATTTGATTTGCAGGCCATTCCCAGTTGGGAACCACCAGCTGAGGGCTCTATAATGATGTGCAAGTTTGTGGAGGTGACTCGAAGCATCTTGGGGGTGAGACAGACTCCTCATTCTGAATTGATTCAAGCAGGGAAAAAGGCAAAGTTGGATACCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004040 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016053 GO:0016787 GO:0016810 GO:0016811 GO:0018130 GO:0019438 GO:0019752 GO:0031974 GO:0031981 GO:0032787 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043864 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00360 ko00380 ko00627 ko00643 ko01120 map00330 map00360 map00380 map00627 map00643 map01120

Pfam Domains

Protein Families

Amidase

Protein Analysis

349

Amino Acids

38.05

Weight (kDa)

9.31

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	37 - 105	4.2e-09	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08980
fragaria_vesca	FvH4_6g05640 FvH4_6g05640 FvH4_6g05640 FvH4_6g05640
malus_domestica	MD00G1147100.v1.1 MD00G1147200.v1.1 MD00G1192400.v1.1 MD04G1207000.v1.1 MD12G1220800.v1.1 MD12G1220900.v1.1 MD12G1221100.v1.1
prunus_persica	Prupe.6G327700_v2.0.a1 Prupe.6G327700_v2.0.a1
pyrus_communis	pycom04g18300 pycom12g20660 pycom12g20670 pycom12g20680 pycom12g20700 pycom12g20710 pycom12g20760
rosa_chinensis	RchiOBHm_Chr3g0454411 RchiOBHm_Chr3g0454431 RchiOBHm_Chr3g0454461 RchiOBHm_Chr3g0454491
rosa_laevigata	RLG00000025440 RLG00000025441 RLG00000025442
rosa_multiflora	Rmu_sc0007209.1_g000005 Rmu_sc0026738.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425030 Rroxscaffold_6G00425050
rosa_rugosa	Rorug02G0654600 Rorug02G0654700
rosa_samantha	Rh1BG006800 Rh3AG058700 Rh3AG059100 Rh3AG059200 Rh3BG060700 Rh3BG061100 Rh3BG061300 Rh3CG059500 Rh3CG059900 Rh3CG060100 Rh3DG060800 Rh3DG061000
rosa_wichuraiana	Rw3G004570 Rw3G004580 Rw3G004590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AccBSI	CCGCTC	1 cut(s)	794
AccII	CGCG	2 cut(s)	56, 400
AciI	CCGC	7 cut(s)	5, 29, 56, 95, 395, 398, 794
AcsI	RAATTY	1 cut(s)	597
AfaI	GTAC	2 cut(s)	323, 384
AfiI	CCNNNNNNNGG	4 cut(s)	49, 243, 316, 932
AgsI	TTSAA	4 cut(s)	295, 828, 842, 1016
AjiI	CACGTC	1 cut(s)	527
AjnI	CCWGG	2 cut(s)	160, 757
AjuI	GAANNNNNNNTTGG	2 cut(s)	677, 709
AluBI	AGCT	6 cut(s)	268, 496, 725, 814, 845, 929
AluI	AGCT	6 cut(s)	268, 496, 725, 814, 845, 929
Alw26I	GTCTC	3 cut(s)	161, 678, 982
AoxI	GGCC	4 cut(s)	15, 571, 852, 903
ApeKI	GCWGC	3 cut(s)	32, 643, 811
ApoI	RAATTY	1 cut(s)	597
Asp700I	GAANNNNTTC	1 cut(s)	1011
AspLEI	GCGC	1 cut(s)	450
AspS9I	GGNCC	7 cut(s)	193, 224, 281, 533, 572, 612, 853
AsuHPI	GGTGA	5 cut(s)	388, 709, 840, 976, 997
AvaII	GGWCC	5 cut(s)	193, 224, 281, 533, 612
AxyI	CCTNAGG	1 cut(s)	576
BanI	GGYRCC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	938
BbvCI	CCTCAGC	1 cut(s)	930
BbvI	GCAGC	3 cut(s)	19, 630, 823
BccI	CCATC	1 cut(s)	338
BcgI	CGANNNNNNTGC	2 cut(s)	228, 262
BciT130I	CCWGG	2 cut(s)	162, 759
BciVI	GTATCC	1 cut(s)	1033
BcoDI	GTCTC	3 cut(s)	161, 678, 982
BfaI	CTAG	4 cut(s)	488, 522, 585, 789
BfmI	CTRYAG	1 cut(s)	356
BfoI	RGCGCY	1 cut(s)	451
BfuI	GTATCC	1 cut(s)	1033
BisI	GCNGC	6 cut(s)	30, 33, 398, 644, 795, 812
BlpI	GCTNAGC	1 cut(s)	815
BlsI	GCNGC	6 cut(s)	31, 34, 399, 645, 796, 813
BmcAI	AGTACT	1 cut(s)	323
Bme1390I	CCNGG	2 cut(s)	162, 759
Bme18I	GGWCC	5 cut(s)	193, 224, 281, 533, 612
BmgBI	CACGTC	1 cut(s)	527
BmgT120I	GGNCC	7 cut(s)	193, 224, 281, 533, 572, 612, 853
BmiI	GGNNCC	6 cut(s)	166, 194, 282, 510, 590, 921
BmrFI	CCNGG	2 cut(s)	162, 759
BmrI	ACTGGG	1 cut(s)	906
BmsI	GCATC	2 cut(s)	610, 984
BmuI	ACTGGG	1 cut(s)	906
BoxI	GACNNNNGTC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	979, 1011
Bpu10I	CCTNAGC	2 cut(s)	497, 930
Bpu1102I	GCTNAGC	1 cut(s)	815
BpuEI	CTTGAG	1 cut(s)	4
BsaI	GGTCTC	2 cut(s)	161, 678
BsaJI	CCNNGG	3 cut(s)	160, 284, 313
Bsc4I	CCNNNNNNNGG	4 cut(s)	49, 243, 316, 932
Bse118I	RCCGGY	2 cut(s)	535, 850
Bse1I	ACTGG	1 cut(s)	912
Bse21I	CCTNAGG	1 cut(s)	576
BseBI	CCWGG	2 cut(s)	162, 759
BseDI	CCNNGG	3 cut(s)	160, 284, 313
BseGI	GGATG	2 cut(s)	103, 711
BseLI	CCNNNNNNNGG	4 cut(s)	49, 243, 316, 932
BseMII	CTCAG	3 cut(s)	557, 740, 921
BseNI	ACTGG	1 cut(s)	912
BseRI	GAGGAG	4 cut(s)	234, 299, 506, 987
BseXI	GCAGC	3 cut(s)	19, 630, 823
BsgI	GTGCAG	2 cut(s)	738, 830
Bsh1236I	CGCG	2 cut(s)	56, 400
BshFI	GGCC	4 cut(s)	17, 573, 854, 905
BshNI	GGYRCC	1 cut(s)	164
BsiSI	CCGG	2 cut(s)	536, 851
BslFI	GGGAC	3 cut(s)	198, 206, 785
BslI	CCNNNNNNNGG	4 cut(s)	49, 243, 316, 932
BsmAI	GTCTC	3 cut(s)	161, 678, 982
BsmFI	GGGAC	3 cut(s)	198, 206, 785
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	4 cut(s)	17, 573, 854, 905
Bso31I	GGTCTC	2 cut(s)	161, 678
Bsp1286I	GDGCHC	1 cut(s)	938
Bsp1720I	GCTNAGC	1 cut(s)	815
BspACI	CCGC	7 cut(s)	5, 29, 56, 95, 395, 398, 794
BspANI	GGCC	4 cut(s)	17, 573, 854, 905
BspCNI	CTCAG	3 cut(s)	558, 739, 922
BspFNI	CGCG	2 cut(s)	56, 400
BspLI	GGNNCC	6 cut(s)	166, 194, 282, 510, 590, 921
BspMAI	CTGCAG	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	164
BspTNI	GGTCTC	2 cut(s)	161, 678
BsrBI	CCGCTC	1 cut(s)	794
BsrFI	RCCGGY	2 cut(s)	535, 850
BsrI	ACTGG	1 cut(s)	912
BssAI	RCCGGY	2 cut(s)	535, 850
BssECI	CCNNGG	3 cut(s)	160, 284, 313
BssT1I	CCWWGG	2 cut(s)	284, 313
Bst2UI	CCWGG	2 cut(s)	162, 759
Bst4CI	ACNGT	3 cut(s)	88, 197, 382
Bst6I	CTCTTC	1 cut(s)	829
BstC8I	GCNNGC	1 cut(s)	903
BstDEI	CTNAG	7 cut(s)	112, 497, 566, 576, 726, 815, 930
BstENI	CCTNNNNNAGG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	103, 711
BstFNI	CGCG	2 cut(s)	56, 400
BstH2I	RGCGCY	1 cut(s)	451
BstHHI	GCGC	1 cut(s)	450
BstMAI	GTCTC	3 cut(s)	161, 678, 982
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 493, 794, 851
BstNI	CCWGG	2 cut(s)	162, 759
BstPAI	GACNNNNGTC	1 cut(s)	153
BstSCI	CCNGG	2 cut(s)	160, 757
BstSFI	CTRYAG	1 cut(s)	356
BstUI	CGCG	2 cut(s)	56, 400
BstV1I	GCAGC	3 cut(s)	19, 630, 823
Bsu36I	CCTNAGG	1 cut(s)	576
BsuI	GTATCC	1 cut(s)	1033
BsuRI	GGCC	4 cut(s)	17, 573, 854, 905
BtrI	CACGTC	1 cut(s)	527
BtsCI	GGATG	2 cut(s)	103, 711
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	903
CfoI	GCGC	1 cut(s)	450
Cfr10I	RCCGGY	2 cut(s)	535, 850
Cfr13I	GGNCC	7 cut(s)	193, 224, 281, 533, 572, 612, 853
CseI	GACGC	2 cut(s)	62, 649
CsiI	ACCWGGT	1 cut(s)	757
Csp6I	GTAC	2 cut(s)	322, 383
CviAII	CATG	3 cut(s)	13, 647, 1045
CviQI	GTAC	2 cut(s)	322, 383
DdeI	CTNAG	7 cut(s)	112, 497, 566, 576, 726, 815, 930
DraI	TTTAAA	1 cut(s)	405
Eam1104I	CTCTTC	1 cut(s)	829
EarI	CTCTTC	1 cut(s)	829
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	284, 313
Eco24I	GRGCYC	1 cut(s)	938
Eco31I	GGTCTC	2 cut(s)	161, 678
Eco47I	GGWCC	5 cut(s)	193, 224, 281, 533, 612
Eco81I	CCTNAGG	1 cut(s)	576
EcoNI	CCTNNNNNAGG	1 cut(s)	47
EcoO109I	RGGNCCY	3 cut(s)	224, 281, 572
EcoRII	CCWGG	2 cut(s)	160, 757
EcoT14I	CCWWGG	2 cut(s)	284, 313
EcoT38I	GRGCYC	1 cut(s)	938
ErhI	CCWWGG	2 cut(s)	284, 313
FaeI	CATG	3 cut(s)	16, 650, 1048
FalI	AAGNNNNNCTT	2 cut(s)	808, 840
FaqI	GGGAC	3 cut(s)	198, 206, 785
FatI	CATG	3 cut(s)	12, 646, 1044
FauNDI	CATATG	1 cut(s)	303
Fnu4HI	GCNGC	6 cut(s)	30, 33, 398, 644, 795, 812
FokI	GGATG	2 cut(s)	110, 718
FriOI	GRGCYC	1 cut(s)	938
Fsp4HI	GCNGC	6 cut(s)	30, 33, 398, 644, 795, 812
FspBI	CTAG	4 cut(s)	488, 522, 585, 789
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	6 cut(s)	30, 33, 398, 644, 795, 812
HaeII	RGCGCY	1 cut(s)	451
HaeIII	GGCC	4 cut(s)	17, 573, 854, 905
HapII	CCGG	2 cut(s)	536, 851
HgaI	GACGC	2 cut(s)	62, 649
HhaI	GCGC	1 cut(s)	450
Hin1II	CATG	3 cut(s)	16, 650, 1048
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HindIII	AAGCTT	2 cut(s)	266, 843
HinfI	GANTC	7 cut(s)	349, 416, 631, 680, 967, 994, 1012
HpaII	CCGG	2 cut(s)	536, 851
HphI	GGTGA	5 cut(s)	388, 709, 840, 976, 997
Hpy188I	TCNGA	5 cut(s)	337, 508, 567, 729, 1006
Hpy188III	TCNNGA	2 cut(s)	237, 677
Hpy99I	CGWCG	3 cut(s)	88, 550, 643
HpyAV	CCTTC	4 cut(s)	524, 544, 679, 813
HpyCH4III	ACNGT	3 cut(s)	88, 197, 382
HpyCH4IV	ACGT	1 cut(s)	526
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 493, 794, 851
HpyF3I	CTNAG	7 cut(s)	112, 497, 566, 576, 726, 815, 930
HpySE526I	ACGT	1 cut(s)	526
Hsp92II	CATG	3 cut(s)	16, 650, 1048
HspAI	GCGC	1 cut(s)	448
LmnI	GCTCC	4 cut(s)	312, 493, 508, 770
Lsp1109I	GCAGC	3 cut(s)	19, 630, 823
LweI	GCATC	2 cut(s)	610, 984
MabI	ACCWGGT	1 cut(s)	757
MaeI	CTAG	4 cut(s)	488, 522, 585, 789
MaeII	ACGT	1 cut(s)	526
MaeIII	GTNAC	3 cut(s)	376, 477, 964
MbiI	CCGCTC	1 cut(s)	794
MboII	GAAGA	2 cut(s)	266, 816
MhlI	GDGCHC	1 cut(s)	938
MluCI	AATT	5 cut(s)	64, 370, 429, 597, 1007
MlyI	GAGTC	3 cut(s)	674, 961, 988
MmeI	TCCRAC	1 cut(s)	1017
MroXI	GAANNNNTTC	1 cut(s)	1011
MseI	TTAA	4 cut(s)	63, 365, 404, 866
MspA1I	CMGCKG	1 cut(s)	929
MspI	CCGG	2 cut(s)	536, 851
MspR9I	CCNGG	2 cut(s)	162, 759
Mva1269I	GAATGC	1 cut(s)	263
MvaI	CCWGG	2 cut(s)	162, 759
MvnI	CGCG	2 cut(s)	56, 400
MwoI	GCNNNNNNNGC	4 cut(s)	38, 493, 794, 851
NdeI	CATATG	1 cut(s)	303
NlaIII	CATG	3 cut(s)	16, 650, 1048
NlaIV	GGNNCC	6 cut(s)	166, 194, 282, 510, 590, 921
NmuCI	GTSAC	2 cut(s)	376, 964
PctI	GAATGC	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	1011
PfeI	GAWTC	4 cut(s)	349, 416, 631, 1012
PkrI	GCNGC	6 cut(s)	31, 34, 399, 645, 796, 813
PleI	GAGTC	3 cut(s)	674, 961, 988
PpsI	GAGTC	3 cut(s)	674, 961, 988
PpuMI	RGGWCCY	2 cut(s)	224, 281
PshAI	GACNNNNGTC	1 cut(s)	153
Psp5II	RGGWCCY	2 cut(s)	224, 281
Psp6I	CCWGG	2 cut(s)	160, 757
PspGI	CCWGG	2 cut(s)	160, 757
PspN4I	GGNNCC	6 cut(s)	166, 194, 282, 510, 590, 921
PspPI	GGNCC	7 cut(s)	193, 224, 281, 533, 572, 612, 853
PspPPI	RGGWCCY	2 cut(s)	224, 281
PstI	CTGCAG	1 cut(s)	360
PvuII	CAGCTG	1 cut(s)	929
RsaI	GTAC	2 cut(s)	323, 384
RsaNI	GTAC	2 cut(s)	322, 383
SaqAI	TTAA	4 cut(s)	63, 365, 404, 866
SatI	GCNGC	6 cut(s)	30, 33, 398, 644, 795, 812
Sau96I	GGNCC	7 cut(s)	193, 224, 281, 533, 572, 612, 853
ScaI	AGTACT	1 cut(s)	323
SchI	GAGTC	3 cut(s)	674, 961, 988
ScrFI	CCNGG	2 cut(s)	162, 759
SduI	GDGCHC	1 cut(s)	938
SexAI	ACCWGGT	1 cut(s)	757
SfaNI	GCATC	2 cut(s)	610, 984
SfcI	CTRYAG	1 cut(s)	356
SinI	GGWCC	5 cut(s)	193, 224, 281, 533, 612
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
Sse9I	AATT	5 cut(s)	64, 370, 429, 597, 1007
SsiI	CCGC	7 cut(s)	5, 29, 56, 95, 395, 398, 794
SspMI	CTAG	4 cut(s)	488, 522, 585, 789
StyD4I	CCNGG	2 cut(s)	160, 757
StyI	CCWWGG	2 cut(s)	284, 313
TaaI	ACNGT	3 cut(s)	88, 197, 382
TaiI	ACGT	1 cut(s)	529
TaqI	TCGA	6 cut(s)	83, 548, 683, 710, 748, 970
TasI	AATT	5 cut(s)	64, 370, 429, 597, 1007
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	3 cut(s)	32, 400, 797
TfiI	GAWTC	4 cut(s)	349, 416, 631, 1012
Tru1I	TTAA	4 cut(s)	63, 365, 404, 866
Tru9I	TTAA	4 cut(s)	63, 365, 404, 866
TscAI	CASTG	1 cut(s)	360
TseFI	GTSAC	2 cut(s)	376, 964
TseI	GCWGC	3 cut(s)	32, 643, 811
Tsp45I	GTSAC	2 cut(s)	376, 964
TspDTI	ATGAA	2 cut(s)	114, 119
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	1 cut(s)	360
VpaK11BI	GGWCC	5 cut(s)	193, 224, 281, 533, 612
XagI	CCTNNNNNAGG	1 cut(s)	47
XapI	RAATTY	1 cut(s)	597
XmnI	GAANNNNTTC	1 cut(s)	1011
XspI	CTAG	4 cut(s)	488, 522, 585, 789
ZrmI	AGTACT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.