MD00G1147100.v1.1

Amidase 1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
32181535 .. 32184102
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1147100.v1.1.491

Sequence Viewer

Length: 1071 bp
ATGTGTGCTTGTGGAACCATGATGGTGAACTTCAGGGTATTTGATGTGGCTGGACGTGTGACTGGGTTTGGGAATCCTGATTGGGCGAGGACTCACCCGGCTGCTGAGTCAACAGCTCCGGCTGTTTCAGCAATATTGAGTGGAGGTGCCACAAGTATTGGTATAACTGTCATGGATGAAATGGCATACTGTATAAATGGAGAGAACAAGCATTATGGCACACCCAGAAATCCGTGCGCACCAGATAGGGTGCCTGGAGGCTCTTCTAGCGGTTCTGCTGTTGCCGTAGCTGTAGGCCTCGCAGATTTTTCCTTAGGAACCGACACTGGAGGAAGTATAAGAGTTCCTGCTTCATATTGTGGAGTTTTTGGGTTTCGGCCATCTCATGGTGTCATTTCTACCTCTGGAGTTACTCCCCTGGCACAAAGTTTCGATACAGTGGGATGGTTTGCAAGGGATCCTGCGATTTTGAATAGAGTTGGACGAGTGTTACTCCAATTGCCTGATACAGGTCCTGTCGTACCCACTCAGTTAATCATCGCAGAAGACTGTTTCCAGCTTTCAAGTGTTCCAAGCAGTCGAGTGAAACAAGTACTTGTTGACTCAGTTGAGAAGTTATTTGGGGGTATGAATTTCAAGAGCAACCATGGTGAATGGGTTAGTACAGTCAGACCTGACTTAGGTCCCGGGATAGGAGAACGTATATGGGCAGCTGTTCGGTCAACAGATGAAAATGTCGATGTTTGTCACTCCGTGATGACTGAATTGCGTGCTGCTCTTACTGACCTTCTCGGGGATTTCGGTGTCCTCGCAATGCCTACAGTTCCAGGGGATCCACCAAAAGCTGCAAACAGATCCTACAACACTGCACAATTTTCGTGCCAGGGCTTTCAGCTTCCTATCCATTGCCGTAGTTTCCGGATTCTGCCAGGTGACTATATACCACTAGGGATGTACGATAACCTACCCGTTTCAGTTTCCTTGCTGGCAAAGCATGGCTCGGACGGGTTCCTGCTCAATCTTGTCGAGACTCTTTACGACACTCTCAAAGAACACGTCGGGAAGTTGTGA

Protein Analysis

357

Amino Acids

37.69

Weight (kDa)

5.74

Isoelectric Point (pI)

30.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Amidase PF01425 15 - 153 1.5e-44 Amidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 238
AccB1I GGYRCC 2 cut(s) 146, 250
AccB7I CCANNNNNTGG 1 cut(s) 386
AccIII TCCGGA 1 cut(s) 918
AciI CCGC 1 cut(s) 270
AclWI GGATC 5 cut(s) 452, 465, 827, 840, 849
AcoI YGGCCR 1 cut(s) 377
AcsI RAATTY 1 cut(s) 631
AcuI CTGAAG 1 cut(s) 16
AdeI CACNNNGTG 1 cut(s) 754
AfaI GTAC 4 cut(s) 522, 594, 664, 956
AfiI CCNNNNNNNGG 5 cut(s) 386, 509, 680, 692, 793
AflIII ACRYGT 2 cut(s) 55, 1054
AgsI TTSAA 3 cut(s) 472, 564, 637
AjiI CACGTC 2 cut(s) 56, 1057
AjnI CCWGG 5 cut(s) 253, 417, 826, 882, 928
AluBI AGCT 6 cut(s) 116, 290, 559, 713, 845, 895
AluI AGCT 6 cut(s) 116, 290, 559, 713, 845, 895
Alw26I GTCTC 1 cut(s) 1022
AlwI GGATC 5 cut(s) 452, 465, 827, 840, 849
AlwNI CAGNNNCTG 1 cut(s) 515
Ama87I CYCGRG 2 cut(s) 686, 791
Aor13HI TCCGGA 1 cut(s) 918
AoxI GGCC 2 cut(s) 295, 377
ApeKI GCWGC 4 cut(s) 101, 710, 773, 845
ApoI RAATTY 1 cut(s) 631
ArsI GACNNNNNNTTYG 1 cut(s) 1041
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 2 cut(s) 512, 683
AsuC2I CCSGG 3 cut(s) 98, 687, 688
AsuHPI GGTGA 4 cut(s) 37, 86, 662, 944
AvaI CYCGRG 2 cut(s) 686, 791
AvaII GGWCC 2 cut(s) 512, 683
AxyI CCTNAGG 1 cut(s) 313
BamHI GGATCC 2 cut(s) 457, 832
BanI GGYRCC 2 cut(s) 146, 250
BbsI GAAGAC 1 cut(s) 552
BbvI GCAGC 4 cut(s) 88, 722, 760, 832
BccI CCATC 3 cut(s) 16, 388, 438
BceAI ACGGC 2 cut(s) 269, 894
BcgI CGANNNNNNTGC 2 cut(s) 858, 892
BciT130I CCWGG 5 cut(s) 255, 419, 828, 884, 930
BcnI CCSGG 3 cut(s) 98, 687, 688
BcoDI GTCTC 1 cut(s) 1022
BfaI CTAG 2 cut(s) 267, 947
BfmI CTRYAG 2 cut(s) 291, 819
BisI GCNGC 4 cut(s) 102, 711, 774, 846
BlsI GCNGC 4 cut(s) 103, 712, 775, 847
BmcAI AGTACT 1 cut(s) 594
Bme1390I CCNGG 8 cut(s) 98, 255, 419, 687, 688, 828, 884, 930
Bme18I GGWCC 2 cut(s) 512, 683
BmeT110I CYCGRG 2 cut(s) 686, 791
BmgBI CACGTC 2 cut(s) 56, 1057
BmgT120I GGNCC 2 cut(s) 512, 683
BmiI GGNNCC 8 cut(s) 16, 148, 252, 319, 459, 685, 834, 1010
BmrFI CCNGG 8 cut(s) 98, 255, 419, 687, 688, 828, 884, 930
BmrI ACTGGG 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 72
BoxI GACNNNNGTC 1 cut(s) 681
BpiI GAAGAC 1 cut(s) 552
BplI GAGNNNNNCTC 2 cut(s) 477, 509
BpmI CTGGAG 3 cut(s) 276, 348, 426
BpuMI CCSGG 3 cut(s) 98, 687, 688
BsaJI CCNNGG 5 cut(s) 417, 646, 686, 827, 883
BsaWI WCCGGW 1 cut(s) 918
Bsc4I CCNNNNNNNGG 5 cut(s) 386, 509, 680, 692, 793
Bse1I ACTGG 2 cut(s) 67, 331
Bse21I CCTNAGG 1 cut(s) 313
Bse3DI GCAATG 2 cut(s) 819, 904
BseAI TCCGGA 1 cut(s) 918
BseBI CCWGG 5 cut(s) 255, 419, 828, 884, 930
BseDI CCNNGG 5 cut(s) 417, 646, 686, 827, 883
BseGI GGATG 3 cut(s) 181, 449, 957
BseLI CCNNNNNNNGG 5 cut(s) 386, 509, 680, 692, 793
BseMI GCAATG 2 cut(s) 819, 904
BseMII CTCAG 3 cut(s) 96, 542, 618
BseNI ACTGG 2 cut(s) 67, 331
BseXI GCAGC 4 cut(s) 88, 722, 760, 832
BsgI GTGCAG 1 cut(s) 852
BshFI GGCC 2 cut(s) 297, 379
BshNI GGYRCC 2 cut(s) 146, 250
BsiHKCI CYCGRG 2 cut(s) 686, 791
BsiSI CCGG 4 cut(s) 98, 119, 687, 919
BslFI GGGAC 1 cut(s) 669
BslI CCNNNNNNNGG 5 cut(s) 386, 509, 680, 692, 793
BsmAI GTCTC 1 cut(s) 1022
BsmFI GGGAC 1 cut(s) 669
BsnI GGCC 2 cut(s) 297, 379
BsoBI CYCGRG 2 cut(s) 686, 791
Bsp13I TCCGGA 1 cut(s) 918
Bsp143I GATC 3 cut(s) 457, 832, 854
Bsp19I CCATGG 1 cut(s) 646
BspACI CCGC 1 cut(s) 270
BspANI GGCC 2 cut(s) 297, 379
BspCNI CTCAG 3 cut(s) 97, 541, 617
BspEI TCCGGA 1 cut(s) 918
BspLI GGNNCC 8 cut(s) 16, 148, 252, 319, 459, 685, 834, 1010
BspPI GGATC 5 cut(s) 452, 465, 827, 840, 849
BspQI GCTCTTC 1 cut(s) 268
BspT107I GGYRCC 2 cut(s) 146, 250
BsrDI GCAATG 2 cut(s) 819, 904
BsrI ACTGG 2 cut(s) 67, 331
BssECI CCNNGG 5 cut(s) 417, 646, 686, 827, 883
BssMI GATC 3 cut(s) 457, 832, 854
BssT1I CCWWGG 1 cut(s) 646
Bst2UI CCWGG 5 cut(s) 255, 419, 828, 884, 930
Bst4CI ACNGT 6 cut(s) 169, 191, 439, 551, 667, 823
Bst6I CTCTTC 1 cut(s) 268
BstC8I GCNNGC 2 cut(s) 771, 987
BstDEI CTNAG 5 cut(s) 105, 313, 528, 604, 679
BstDSI CCRYGG 1 cut(s) 646
BstENI CCTNNNNNAGG 2 cut(s) 507, 678
BstF5I GGATG 3 cut(s) 181, 449, 957
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 3 cut(s) 460, 835, 857
BstMAI GTCTC 1 cut(s) 1022
BstMBI GATC 3 cut(s) 457, 832, 854
BstMWI GCNNNNNNNGC 3 cut(s) 128, 267, 991
BstNI CCWGG 5 cut(s) 255, 419, 828, 884, 930
BstPAI GACNNNNGTC 1 cut(s) 681
BstSCI CCNGG 8 cut(s) 96, 253, 417, 685, 686, 826, 882, 928
BstSFI CTRYAG 2 cut(s) 291, 819
BstV1I GCAGC 4 cut(s) 88, 722, 760, 832
BstV2I GAAGAC 1 cut(s) 552
BstX2I RGATCY 3 cut(s) 457, 832, 854
BstYI RGATCY 3 cut(s) 457, 832, 854
Bsu36I CCTNAGG 1 cut(s) 313
BsuRI GGCC 2 cut(s) 297, 379
BtgI CCRYGG 1 cut(s) 646
BtgZI GCGATG 1 cut(s) 523
BtrI CACGTC 2 cut(s) 56, 1057
BtsCI GGATG 3 cut(s) 181, 449, 957
BtsI GCAGTG 1 cut(s) 864
BtsIMutI CAGTG 3 cut(s) 324, 444, 864
Cac8I GCNNGC 2 cut(s) 771, 987
CaiI CAGNNNCTG 1 cut(s) 515
CfoI GCGC 1 cut(s) 239
Cfr13I GGNCC 2 cut(s) 512, 683
Cfr9I CCCGGG 1 cut(s) 686
Csp6I GTAC 4 cut(s) 521, 593, 663, 955
CspCI CAANNNNNGTGG 2 cut(s) 139, 174
CviAII CATG 5 cut(s) 19, 172, 386, 647, 995
CviQI GTAC 4 cut(s) 521, 593, 663, 955
DdeI CTNAG 5 cut(s) 105, 313, 528, 604, 679
DpnI GATC 3 cut(s) 459, 834, 856
DpnII GATC 3 cut(s) 457, 832, 854
DraIII CACNNNGTG 1 cut(s) 754
EaeI YGGCCR 1 cut(s) 377
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 646
Eco147I AGGCCT 1 cut(s) 297
Eco47I GGWCC 2 cut(s) 512, 683
Eco57I CTGAAG 1 cut(s) 16
Eco81I CCTNAGG 1 cut(s) 313
Eco88I CYCGRG 2 cut(s) 686, 791
EcoNI CCTNNNNNAGG 2 cut(s) 507, 678
EcoO109I RGGNCCY 2 cut(s) 512, 683
EcoRII CCWGG 5 cut(s) 253, 417, 826, 882, 928
EcoT14I CCWWGG 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 646
FaeI CATG 5 cut(s) 22, 175, 389, 650, 998
FaqI GGGAC 1 cut(s) 669
FatI CATG 5 cut(s) 18, 171, 385, 646, 994
Fnu4HI GCNGC 4 cut(s) 102, 711, 774, 846
FokI GGATG 3 cut(s) 188, 456, 964
Fsp4HI GCNGC 4 cut(s) 102, 711, 774, 846
FspAI RTGCGCAY 1 cut(s) 238
FspBI CTAG 2 cut(s) 267, 947
FspI TGCGCA 1 cut(s) 238
GlaI GCGC 1 cut(s) 238
GluI GCNGC 4 cut(s) 102, 711, 774, 846
GsuI CTGGAG 3 cut(s) 276, 348, 426
HaeIII GGCC 2 cut(s) 297, 379
HapII CCGG 4 cut(s) 98, 119, 687, 919
HhaI GCGC 1 cut(s) 239
Hin1II CATG 5 cut(s) 22, 175, 389, 650, 998
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HincII GTYRAC 3 cut(s) 111, 601, 723
HindII GTYRAC 3 cut(s) 111, 601, 723
HinfI GANTC 6 cut(s) 73, 91, 107, 602, 922, 1030
HpaII CCGG 4 cut(s) 98, 119, 687, 919
HphI GGTGA 4 cut(s) 37, 86, 662, 944
Hpy166II GTNNAC 4 cut(s) 28, 111, 601, 723
Hpy188I TCNGA 2 cut(s) 671, 1003
Hpy188III TCNNGA 6 cut(s) 77, 405, 637, 919, 1027, 1060
Hpy8I GTNNAC 4 cut(s) 28, 111, 601, 723
Hpy99I CGWCG 1 cut(s) 1061
HpyAV CCTTC 1 cut(s) 797
HpyCH4III ACNGT 6 cut(s) 169, 191, 439, 551, 667, 823
HpyCH4IV ACGT 3 cut(s) 55, 700, 1056
HpyCH4V TGCA 3 cut(s) 452, 848, 869
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 267, 991
HpyF3I CTNAG 5 cut(s) 105, 313, 528, 604, 679
HpySE526I ACGT 3 cut(s) 55, 700, 1056
Hsp92II CATG 5 cut(s) 22, 175, 389, 650, 998
HspAI GCGC 1 cut(s) 237
Kpn2I TCCGGA 1 cut(s) 918
Kzo9I GATC 3 cut(s) 457, 832, 854
LguI GCTCTTC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 121
Lsp1109I GCAGC 4 cut(s) 88, 722, 760, 832
MaeI CTAG 2 cut(s) 267, 947
MaeII ACGT 3 cut(s) 55, 700, 1056
MaeIII GTNAC 5 cut(s) 58, 409, 489, 746, 932
MalI GATC 3 cut(s) 459, 834, 856
MboI GATC 3 cut(s) 457, 832, 854
MboII GAAGA 2 cut(s) 255, 557
MfeI CAATTG 1 cut(s) 497
MflI RGATCY 3 cut(s) 457, 832, 854
MluCI AATT 4 cut(s) 497, 631, 764, 872
MlyI GAGTC 4 cut(s) 85, 116, 596, 1024
MmeI TCCRAC 1 cut(s) 460
MnlI CCTC 7 cut(s) 81, 137, 251, 308, 323, 412, 818
MroI TCCGGA 1 cut(s) 918
MseI TTAA 1 cut(s) 533
MslI CAYNNNNRTG 1 cut(s) 23
MspA1I CMGCKG 1 cut(s) 713
MspI CCGG 4 cut(s) 98, 119, 687, 919
MspR9I CCNGG 8 cut(s) 98, 255, 419, 687, 688, 828, 884, 930
MunI CAATTG 1 cut(s) 497
MvaI CCWGG 5 cut(s) 255, 419, 828, 884, 930
MwoI GCNNNNNNNGC 3 cut(s) 128, 267, 991
NciI CCSGG 3 cut(s) 98, 687, 688
NcoI CCATGG 1 cut(s) 646
NdeII GATC 3 cut(s) 457, 832, 854
NlaIII CATG 5 cut(s) 22, 175, 389, 650, 998
NlaIV GGNNCC 8 cut(s) 16, 148, 252, 319, 459, 685, 834, 1010
NmuCI GTSAC 3 cut(s) 58, 746, 932
NsbI TGCGCA 1 cut(s) 238
PceI AGGCCT 1 cut(s) 297
PciSI GCTCTTC 1 cut(s) 268
PfeI GAWTC 2 cut(s) 73, 922
PflMI CCANNNNNTGG 1 cut(s) 386
PkrI GCNGC 4 cut(s) 103, 712, 775, 847
PleI GAGTC 4 cut(s) 85, 115, 596, 1024
PpsI GAGTC 4 cut(s) 85, 115, 596, 1024
PpuMI RGGWCCY 2 cut(s) 512, 683
PshAI GACNNNNGTC 1 cut(s) 681
Psp5II RGGWCCY 2 cut(s) 512, 683
Psp6I CCWGG 5 cut(s) 253, 417, 826, 882, 928
PspGI CCWGG 5 cut(s) 253, 417, 826, 882, 928
PspN4I GGNNCC 8 cut(s) 16, 148, 252, 319, 459, 685, 834, 1010
PspPI GGNCC 2 cut(s) 512, 683
PspPPI RGGWCCY 2 cut(s) 512, 683
PstNI CAGNNNCTG 1 cut(s) 515
PsuI RGATCY 3 cut(s) 457, 832, 854
PvuII CAGCTG 1 cut(s) 713
RsaI GTAC 4 cut(s) 522, 594, 664, 956
RsaNI GTAC 4 cut(s) 521, 593, 663, 955
RseI CAYNNNNRTG 1 cut(s) 23
SapI GCTCTTC 1 cut(s) 268
SaqAI TTAA 1 cut(s) 533
SatI GCNGC 4 cut(s) 102, 711, 774, 846
Sau3AI GATC 3 cut(s) 457, 832, 854
Sau96I GGNCC 2 cut(s) 512, 683
ScaI AGTACT 1 cut(s) 594
SchI GAGTC 4 cut(s) 85, 116, 596, 1024
ScrFI CCNGG 8 cut(s) 98, 255, 419, 687, 688, 828, 884, 930
SfcI CTRYAG 2 cut(s) 291, 819
SinI GGWCC 2 cut(s) 512, 683
SmaI CCCGGG 1 cut(s) 688
SmiMI CAYNNNNRTG 1 cut(s) 23
Sse9I AATT 4 cut(s) 497, 631, 764, 872
SseBI AGGCCT 1 cut(s) 297
SsiI CCGC 1 cut(s) 270
SspI AATATT 1 cut(s) 135
SspMI CTAG 2 cut(s) 267, 947
StuI AGGCCT 1 cut(s) 297
StyD4I CCNGG 8 cut(s) 96, 253, 417, 685, 686, 826, 882, 928
StyI CCWWGG 1 cut(s) 646
TaaI ACNGT 6 cut(s) 169, 191, 439, 551, 667, 823
TaiI ACGT 3 cut(s) 58, 703, 1059
TaqI TCGA 4 cut(s) 432, 580, 738, 1026
TaqII GACCGA 1 cut(s) 708
TasI AATT 4 cut(s) 497, 631, 764, 872
TatI WGTACW 2 cut(s) 592, 662
TfiI GAWTC 2 cut(s) 73, 922
Tru1I TTAA 1 cut(s) 533
Tru9I TTAA 1 cut(s) 533
TscAI CASTG 3 cut(s) 331, 444, 871
TseFI GTSAC 3 cut(s) 58, 746, 932
TseI GCWGC 4 cut(s) 101, 710, 773, 845
Tsp45I GTSAC 3 cut(s) 58, 746, 932
TspDTI ATGAA 4 cut(s) 192, 342, 644, 744
TspGWI ACGGA 2 cut(s) 222, 742
TspMI CCCGGG 1 cut(s) 686
TspRI CASTG 3 cut(s) 331, 444, 871
Van91I CCANNNNNTGG 1 cut(s) 386
VpaK11BI GGWCC 2 cut(s) 512, 683
XagI CCTNNNNNAGG 2 cut(s) 507, 678
XapI RAATTY 1 cut(s) 631
XmaI CCCGGG 1 cut(s) 686
XspI CTAG 2 cut(s) 267, 947
ZrmI AGTACT 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.