FvH4_6g05640

Amidase 1-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
3216795 .. 3220615
3821 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05640.t6

Sequence Viewer

Length: 1278 bp
ATGGAGGAAGACGCAGATAATGGAGCTTTCGTAGAGAAATTCCTTCTGCAACCAAGCTCTTCATCTCATGAGCTTCCCTTGAGTGGCCTCACCTTTGCTGTCAAGGACATATTTGATGTGGCTGGATATGTGACTGGATTTGGAAATCCTGATTGGGCAAGGACTCACCCAGGTGCTGAATCGACAGCTCCTTCCATTTCGACAATCTTAAGAGGAGGTGCTACATGTATTGGTAAAACTGTCATGGATGAAATGGCATATAGTATAAATGGAGAGAATAAACATTATGGCACACCGGTAAATCCATGTGCACCGGATAGGGTGCCTGGAGGATCGTCTAGTGGCTCTGCTGTTGTAGTAGGAACTGACACTGGAGGAAGTGTAAGAGTTCCTGCTTCATATTGTGGAATTTTTGGGTTCCGACCGTCTCATGGTGCCATTTCTACTTCTGGAGTTACTCCTATGGCACAAAGTTTTGATACCGTGGGATGGTTTGCTAGGGATCCTGTTCTTTTGAGTAGAGTTGGACGAGCATTACTGCAAATTCCTGATGCGCATCCTGTCAGACCAGTTCAGTTGATCATTGCTGAAGACTGTTTCCAGCTTTCAAGCATTCCAACTGATCGAGTAAAACAAGTACTTGTTCACTCAGTTGAGAAGTTATTCGGGGGTCATGTTTTAAAGCATGCAAACCTTGGGGACATTGTGAAGGACAAAGTTCCAAGTTTGAACTGTTTCTTCAGTAAAGGAAATGCAAGTCAAGAGTTTAACATACCATCCTTGGCTGCCCTGTCAAGTGCCATGCGGATACTTCAAAGGCATGAATTCAAGACCAACCATGGTGAATGGATCAAAACAATCAGACCTGATTTAGGTCCTGGGATATCAGAACGTGTATGGGAAGCTGTTAGGGCAGCAGATGAAAATACCAATGTTTGTCACTCCGTGAAAACTGAACTTCGTGCTACTCTTACTGAACTTCTTGGGGATGCTGGTGTCCTTGCAATTCCTACAGTTCCAGGGCCTCCACCAAAACTACAAATGGATCCTACTACACTTGAAACATTCCGTGCTAGGGCTTTTAGCTTGTTGTCCATTGCCGGAGTATCTGGATTCTGCCAGGTGAGCATACCACTAGGCATGCATGAAGGCCTACCTGTGTCGGTTTCCTTGCTGGCAACGCACGGCTCAGATGGATTCCTGCTTAGTCTTGTGGAGACTCTCTATGGCACTCTCAAAGAACAAGTTGAAAGCTTGAACTTTCATCCTTGTTTATAA

Protein Analysis

426

Amino Acids

45.28

Weight (kDa)

5.86

Isoelectric Point (pI)

30.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Amidase PF01425 22 - 177 2e-52 Amidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1276
Acc16I TGCGCA 1 cut(s) 555
AccB1I GGYRCC 2 cut(s) 322, 434
AciI CCGC 1 cut(s) 805
AclWI GGATC 6 cut(s) 340, 497, 510, 857, 1040, 1053
AcsI RAATTY 4 cut(s) 38, 408, 543, 824
AcuI CTGAAG 2 cut(s) 609, 724
AdeI CACNNNGTG 1 cut(s) 946
AfaI GTAC 1 cut(s) 639
AfiI CCNNNNNNNGG 5 cut(s) 83, 431, 489, 872, 1075
AflII CTTAAG 1 cut(s) 208
AflIII ACRYGT 2 cut(s) 224, 892
AgeI ACCGGT 1 cut(s) 295
AgsI TTSAA 7 cut(s) 609, 730, 815, 829, 1061, 1250, 1258
AjnI CCWGG 5 cut(s) 169, 325, 877, 1018, 1119
AjuI GAANNNNNNNTTGG 2 cut(s) 136, 168
AleI CACNNNNGTG 1 cut(s) 171
AluBI AGCT 8 cut(s) 26, 57, 73, 188, 604, 905, 1086, 1254
AluI AGCT 8 cut(s) 26, 57, 73, 188, 604, 905, 1086, 1254
Alw21I GWGCWC 1 cut(s) 313
Alw26I GTCTC 2 cut(s) 432, 1211
Alw44I GTGCAC 1 cut(s) 309
AlwI GGATC 6 cut(s) 340, 497, 510, 857, 1040, 1053
AlwNI CAGNNNCTG 1 cut(s) 176
AoxI GGCC 3 cut(s) 85, 1022, 1150
ApaLI GTGCAC 1 cut(s) 309
ApeKI GCWGC 2 cut(s) 785, 914
ApoI RAATTY 4 cut(s) 38, 408, 543, 824
AsiGI ACCGGT 1 cut(s) 295
Asp700I GAANNNNTTC 2 cut(s) 662, 734
AspLEI GCGC 1 cut(s) 556
AspS9I GGNCC 2 cut(s) 875, 1022
AsuHPI GGTGA 4 cut(s) 82, 158, 854, 1135
AvaII GGWCC 1 cut(s) 875
BaeGI GKGCMC 1 cut(s) 313
BamHI GGATCC 2 cut(s) 502, 1045
BanI GGYRCC 2 cut(s) 322, 434
BbsI GAAGAC 2 cut(s) 15, 597
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 2 cut(s) 772, 926
BccI CCATC 3 cut(s) 483, 784, 1187
BceAI ACGGC 1 cut(s) 1201
BciT130I CCWGG 5 cut(s) 171, 327, 879, 1020, 1121
BciVI GTATCC 1 cut(s) 801
BclI TGATCA 1 cut(s) 579
BcoDI GTCTC 2 cut(s) 432, 1211
BfaI CTAG 4 cut(s) 339, 498, 1074, 1136
BfmI CTRYAG 1 cut(s) 1011
BfrI CTTAAG 1 cut(s) 208
BfuI GTATCC 1 cut(s) 801
BisI GCNGC 2 cut(s) 786, 915
BlsI GCNGC 2 cut(s) 787, 916
BmcAI AGTACT 1 cut(s) 639
Bme1390I CCNGG 5 cut(s) 171, 327, 879, 1020, 1121
Bme18I GGWCC 1 cut(s) 875
BmgT120I GGNCC 2 cut(s) 875, 1022
BmiI GGNNCC 5 cut(s) 324, 419, 436, 504, 1047
BmrFI CCNGG 5 cut(s) 171, 327, 879, 1020, 1121
BmsI GCATC 3 cut(s) 541, 565, 979
BpiI GAAGAC 2 cut(s) 15, 597
BpmI CTGGAG 3 cut(s) 348, 393, 471
BpuEI CTTGAG 1 cut(s) 100
BsaBI GATNNNNATC 1 cut(s) 555
BsaJI CCNNGG 7 cut(s) 169, 483, 694, 780, 838, 878, 1019
BsaWI WCCGGW 2 cut(s) 295, 313
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 366, 396
Bsc4I CCNNNNNNNGG 5 cut(s) 83, 431, 489, 872, 1075
Bse118I RCCGGY 1 cut(s) 295
Bse1I ACTGG 3 cut(s) 139, 376, 569
Bse3DI GCAATG 2 cut(s) 582, 1095
Bse8I GATNNNNATC 1 cut(s) 555
BseBI CCWGG 5 cut(s) 171, 327, 879, 1020, 1121
BseDI CCNNGG 7 cut(s) 169, 483, 694, 780, 838, 878, 1019
BseGI GGATG 6 cut(s) 253, 494, 556, 776, 994, 1264
BseJI GATNNNNATC 1 cut(s) 555
BseLI CCNNNNNNNGG 5 cut(s) 83, 431, 489, 872, 1075
BseMI GCAATG 2 cut(s) 582, 1095
BseMII CTCAG 2 cut(s) 663, 1203
BseNI ACTGG 3 cut(s) 139, 376, 569
BseRI GAGGAG 1 cut(s) 228
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 2 cut(s) 772, 926
Bsh1285I CGRYCG 1 cut(s) 425
BshFI GGCC 3 cut(s) 87, 1024, 1152
BshNI GGYRCC 2 cut(s) 322, 434
BshTI ACCGGT 1 cut(s) 295
BsiEI CGRYCG 1 cut(s) 425
BsiHKAI GWGCWC 1 cut(s) 313
BsiSI CCGG 3 cut(s) 296, 314, 1101
BslFI GGGAC 1 cut(s) 713
BslI CCNNNNNNNGG 5 cut(s) 83, 431, 489, 872, 1075
BsmAI GTCTC 2 cut(s) 432, 1211
BsmBI CGTCTC 1 cut(s) 432
BsmFI GGGAC 1 cut(s) 713
BsmI GAATGC 1 cut(s) 612
BsnI GGCC 3 cut(s) 87, 1024, 1152
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 6 cut(s) 332, 502, 579, 622, 849, 1045
Bsp19I CCATGG 1 cut(s) 838
BspACI CCGC 1 cut(s) 805
BspANI GGCC 3 cut(s) 87, 1024, 1152
BspCNI CTCAG 2 cut(s) 662, 1202
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 5 cut(s) 324, 419, 436, 504, 1047
BspPI GGATC 6 cut(s) 340, 497, 510, 857, 1040, 1053
BspQI GCTCTTC 1 cut(s) 64
BspT107I GGYRCC 2 cut(s) 322, 434
BspTI CTTAAG 1 cut(s) 208
BsrDI GCAATG 2 cut(s) 582, 1095
BsrFI RCCGGY 1 cut(s) 295
BsrI ACTGG 3 cut(s) 139, 376, 569
BssAI RCCGGY 1 cut(s) 295
BssECI CCNNGG 7 cut(s) 169, 483, 694, 780, 838, 878, 1019
BssMI GATC 6 cut(s) 332, 502, 579, 622, 849, 1045
BssT1I CCWWGG 3 cut(s) 694, 780, 838
Bst2UI CCWGG 5 cut(s) 171, 327, 879, 1020, 1121
Bst4CI ACNGT 6 cut(s) 241, 426, 484, 596, 734, 1015
Bst6I CTCTTC 1 cut(s) 64
BstAFI CTTAAG 1 cut(s) 208
BstC8I GCNNGC 3 cut(s) 687, 1142, 1176
BstDEI CTNAG 3 cut(s) 649, 1189, 1205
BstDSI CCRYGG 2 cut(s) 483, 838
BstENI CCTNNNNNAGG 1 cut(s) 870
BstF5I GGATG 6 cut(s) 253, 494, 556, 776, 994, 1264
BstHHI GCGC 1 cut(s) 556
BstKTI GATC 6 cut(s) 335, 505, 582, 625, 852, 1048
BstMAI GTCTC 2 cut(s) 432, 1211
BstMBI GATC 6 cut(s) 332, 502, 579, 622, 849, 1045
BstMCI CGRYCG 1 cut(s) 425
BstMWI GCNNNNNNNGC 3 cut(s) 911, 1125, 1180
BstNI CCWGG 5 cut(s) 171, 327, 879, 1020, 1121
BstNSI RCATGY 3 cut(s) 228, 689, 1144
BstSCI CCNGG 5 cut(s) 169, 325, 877, 1018, 1119
BstSFI CTRYAG 1 cut(s) 1011
BstSLI GKGCMC 1 cut(s) 313
BstV1I GCAGC 2 cut(s) 772, 926
BstV2I GAAGAC 2 cut(s) 15, 597
BstX2I RGATCY 2 cut(s) 502, 1045
BstYI RGATCY 2 cut(s) 502, 1045
BsuI GTATCC 1 cut(s) 801
BsuRI GGCC 3 cut(s) 87, 1024, 1152
BtgI CCRYGG 2 cut(s) 483, 838
BtsCI GGATG 6 cut(s) 253, 494, 556, 776, 994, 1264
BtsIMutI CAGTG 1 cut(s) 369
Cac8I GCNNGC 3 cut(s) 687, 1142, 1176
CaiI CAGNNNCTG 1 cut(s) 176
CciI TCATGA 1 cut(s) 67
CfoI GCGC 1 cut(s) 556
Cfr10I RCCGGY 1 cut(s) 295
Cfr13I GGNCC 2 cut(s) 875, 1022
CseI GACGC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 638
CspAI ACCGGT 1 cut(s) 295
CviQI GTAC 1 cut(s) 638
DdeI CTNAG 3 cut(s) 649, 1189, 1205
DpnI GATC 6 cut(s) 334, 504, 581, 624, 851, 1047
DpnII GATC 6 cut(s) 332, 502, 579, 622, 849, 1045
DraI TTTAAA 1 cut(s) 681
DraIII CACNNNGTG 1 cut(s) 946
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
Eco130I CCWWGG 3 cut(s) 694, 780, 838
Eco147I AGGCCT 1 cut(s) 1152
Eco32I GATATC 1 cut(s) 885
Eco47I GGWCC 1 cut(s) 875
Eco57I CTGAAG 2 cut(s) 609, 724
EcoNI CCTNNNNNAGG 1 cut(s) 870
EcoO109I RGGNCCY 2 cut(s) 875, 1022
EcoRI GAATTC 1 cut(s) 824
EcoRII CCWGG 5 cut(s) 169, 325, 877, 1018, 1119
EcoRV GATATC 1 cut(s) 885
EcoT14I CCWWGG 3 cut(s) 694, 780, 838
EcoT22I ATGCAT 1 cut(s) 1146
ErhI CCWWGG 3 cut(s) 694, 780, 838
Esp3I CGTCTC 1 cut(s) 432
FaqI GGGAC 1 cut(s) 713
FbaI TGATCA 1 cut(s) 579
Fnu4HI GCNGC 2 cut(s) 786, 915
FokI GGATG 6 cut(s) 260, 501, 543, 763, 1001, 1251
Fsp4HI GCNGC 2 cut(s) 786, 915
FspAI RTGCGCAY 1 cut(s) 555
FspBI CTAG 4 cut(s) 339, 498, 1074, 1136
FspI TGCGCA 1 cut(s) 555
GlaI GCGC 1 cut(s) 555
GluI GCNGC 2 cut(s) 786, 915
GsuI CTGGAG 3 cut(s) 348, 393, 471
HaeIII GGCC 3 cut(s) 87, 1024, 1152
HapII CCGG 3 cut(s) 296, 314, 1101
HgaI GACGC 1 cut(s) 20
HhaI GCGC 1 cut(s) 556
Hin6I GCGC 1 cut(s) 554
HinP1I GCGC 1 cut(s) 554
HindIII AAGCTT 1 cut(s) 1252
HinfI GANTC 5 cut(s) 163, 179, 1113, 1197, 1219
HpaII CCGG 3 cut(s) 296, 314, 1101
HphI GGTGA 4 cut(s) 82, 158, 854, 1135
Hpy166II GTNNAC 2 cut(s) 311, 646
Hpy188I TCNGA 5 cut(s) 422, 566, 863, 889, 1192
Hpy188III TCNNGA 7 cut(s) 68, 149, 450, 548, 761, 829, 1110
Hpy8I GTNNAC 2 cut(s) 311, 646
HpyAV CCTTC 4 cut(s) 53, 201, 703, 1142
HpyCH4III ACNGT 6 cut(s) 241, 426, 484, 596, 734, 1015
HpyCH4IV ACGT 1 cut(s) 892
HpyCH4V TGCA 7 cut(s) 49, 311, 541, 689, 755, 1004, 1144
HpyF10VI GCNNNNNNNGC 3 cut(s) 911, 1125, 1180
HpyF3I CTNAG 3 cut(s) 649, 1189, 1205
HpySE526I ACGT 1 cut(s) 892
HspAI GCGC 1 cut(s) 554
Ksp22I TGATCA 1 cut(s) 579
Kzo9I GATC 6 cut(s) 332, 502, 579, 622, 849, 1045
LguI GCTCTTC 1 cut(s) 64
LmnI GCTCC 2 cut(s) 23, 193
Lsp1109I GCAGC 2 cut(s) 772, 926
LweI GCATC 3 cut(s) 541, 565, 979
MaeI CTAG 4 cut(s) 339, 498, 1074, 1136
MaeII ACGT 1 cut(s) 892
MaeIII GTNAC 3 cut(s) 130, 454, 938
MalI GATC 6 cut(s) 334, 504, 581, 624, 851, 1047
MboI GATC 6 cut(s) 332, 502, 579, 622, 849, 1045
MboII GAAGA 4 cut(s) 20, 51, 602, 730
MflI RGATCY 2 cut(s) 502, 1045
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 5 cut(s) 38, 408, 543, 824, 1005
MlyI GAGTC 2 cut(s) 157, 1213
MmeI TCCRAC 3 cut(s) 445, 505, 641
MnlI CCTC 6 cut(s) 98, 206, 209, 323, 368, 1035
Mph1103I ATGCAT 1 cut(s) 1146
MroXI GAANNNNTTC 2 cut(s) 662, 734
MseI TTAA 3 cut(s) 209, 680, 768
MslI CAYNNNNRTG 1 cut(s) 171
MspCI CTTAAG 1 cut(s) 208
MspI CCGG 3 cut(s) 296, 314, 1101
MspR9I CCNGG 5 cut(s) 171, 327, 879, 1020, 1121
Mva1269I GAATGC 1 cut(s) 612
MvaI CCWGG 5 cut(s) 171, 327, 879, 1020, 1121
MwoI GCNNNNNNNGC 3 cut(s) 911, 1125, 1180
NcoI CCATGG 1 cut(s) 838
NdeII GATC 6 cut(s) 332, 502, 579, 622, 849, 1045
NlaIV GGNNCC 5 cut(s) 324, 419, 436, 504, 1047
NmuCI GTSAC 2 cut(s) 130, 938
NsbI TGCGCA 1 cut(s) 555
NsiI ATGCAT 1 cut(s) 1146
NspI RCATGY 3 cut(s) 228, 689, 1144
OliI CACNNNNGTG 1 cut(s) 171
PaeI GCATGC 2 cut(s) 689, 1144
PagI TCATGA 1 cut(s) 67
PceI AGGCCT 1 cut(s) 1152
PciI ACATGT 1 cut(s) 224
PciSI GCTCTTC 1 cut(s) 64
PctI GAATGC 1 cut(s) 612
PdmI GAANNNNTTC 2 cut(s) 662, 734
PfeI GAWTC 3 cut(s) 179, 1113, 1197
PinAI ACCGGT 1 cut(s) 295
PkrI GCNGC 2 cut(s) 787, 916
PleI GAGTC 2 cut(s) 157, 1213
PpsI GAGTC 2 cut(s) 157, 1213
PpuMI RGGWCCY 1 cut(s) 875
PscI ACATGT 1 cut(s) 224
PsiI TTATAA 1 cut(s) 1276
Psp5II RGGWCCY 1 cut(s) 875
Psp6I CCWGG 5 cut(s) 169, 325, 877, 1018, 1119
PspGI CCWGG 5 cut(s) 169, 325, 877, 1018, 1119
PspN4I GGNNCC 5 cut(s) 324, 419, 436, 504, 1047
PspPI GGNCC 2 cut(s) 875, 1022
PspPPI RGGWCCY 1 cut(s) 875
PstNI CAGNNNCTG 1 cut(s) 176
PsuI RGATCY 2 cut(s) 502, 1045
RsaI GTAC 1 cut(s) 639
RsaNI GTAC 1 cut(s) 638
RseI CAYNNNNRTG 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 64
SaqAI TTAA 3 cut(s) 209, 680, 768
SatI GCNGC 2 cut(s) 786, 915
Sau3AI GATC 6 cut(s) 332, 502, 579, 622, 849, 1045
Sau96I GGNCC 2 cut(s) 875, 1022
ScaI AGTACT 1 cut(s) 639
SchI GAGTC 2 cut(s) 157, 1213
ScrFI CCNGG 5 cut(s) 171, 327, 879, 1020, 1121
SduI GDGCHC 1 cut(s) 313
SfaNI GCATC 3 cut(s) 541, 565, 979
SfcI CTRYAG 1 cut(s) 1011
SinI GGWCC 1 cut(s) 875
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 2 cut(s) 79, 208
SmoI CTYRAG 2 cut(s) 79, 208
SphI GCATGC 2 cut(s) 689, 1144
Sse9I AATT 5 cut(s) 38, 408, 543, 824, 1005
SseBI AGGCCT 1 cut(s) 1152
SsiI CCGC 1 cut(s) 805
SspMI CTAG 4 cut(s) 339, 498, 1074, 1136
StuI AGGCCT 1 cut(s) 1152
StyD4I CCNGG 5 cut(s) 169, 325, 877, 1018, 1119
StyI CCWWGG 3 cut(s) 694, 780, 838
TaaI ACNGT 6 cut(s) 241, 426, 484, 596, 734, 1015
TaiI ACGT 1 cut(s) 895
TaqI TCGA 3 cut(s) 182, 200, 625
TasI AATT 5 cut(s) 38, 408, 543, 824, 1005
TatI WGTACW 1 cut(s) 637
TfiI GAWTC 3 cut(s) 179, 1113, 1197
Tru1I TTAA 3 cut(s) 209, 680, 768
Tru9I TTAA 3 cut(s) 209, 680, 768
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 2 cut(s) 130, 938
TseI GCWGC 2 cut(s) 785, 914
Tsp45I GTSAC 2 cut(s) 130, 938
TspDTI ATGAA 7 cut(s) 51, 264, 387, 837, 936, 1161, 1253
TspGWI ACGGA 2 cut(s) 934, 1058
TspRI CASTG 1 cut(s) 376
Vha464I CTTAAG 1 cut(s) 208
VneI GTGCAC 1 cut(s) 309
VpaK11BI GGWCC 1 cut(s) 875
XagI CCTNNNNNAGG 1 cut(s) 870
XapI RAATTY 4 cut(s) 38, 408, 543, 824
XceI RCATGY 3 cut(s) 228, 689, 1144
XmnI GAANNNNTTC 2 cut(s) 662, 734
XspI CTAG 4 cut(s) 339, 498, 1074, 1136
ZrmI AGTACT 1 cut(s) 639
Zsp2I ATGCAT 1 cut(s) 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.