Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001680

Physical Location & Seq

Genomic Coordinates Reverse (-)

45775798 .. 45783592

Gene Structure 7795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025441

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2277 bp

ATGGGTTTTGCTAAAGCCTTACTGGAGCTCAATGATATTGGACTAGAGTTTTTGTGGCCAGTTGGTAGGATTAAGGAAGCACTATCCGGAATAGATGTTCCCAACCCATCAACACCTACCTCTTGTCCAGCGGAAGTGATCAAATCACTTGCTATTGAAGAACTAAATATTCCAGAGGCAAAAATCGGAATTGCTGCTGGAGTCTTGGCTTTTCTTTGGCTATATTCATCTATCCAAGGGCATGGGACTCTGCCTGCATCAGTTATTATCAGTTTTGAACTTCCTTTGGGTTCAGGTGTTGGGTCATCTGCTGCACTTTGTGTTGCATTCTCTGGTGAAAAAATCATCCATGGAAAGCCATCTGGAATTGACAACTCAGTCAGCACATATGGGAATATGATCAAGTTTAGATCAGGCAGTTTGACACGCCTCAAATCGAACATGCCACTCAAAATGCTCATTACTAACACAAAAGTTGGGAGGAACACAAAGGCCTTAGTTGCTGGTGTTACAGAGAGGACATTAAGGCATCCAGATGCTATGGCTTCTGTGTTTAATGCAGTTGATTCAATCAGCGCGGAATTGGCTACCATCATCCAATTAGAGGCCCCTGATGAAATCTCTGTAACCGAGAAGGATGCGAAAATGGAAGAGCTGATGGAAATGAACCAAGGTTTGCTCCAATGCATGGGGGTCAGCCATGCTTCAATCGAAACCATTCTTCGAACTACACTCAAATACAAGTTGGCTTTCAAGTTGACAGGGGCTCGTGGTGGAGGCTCTGTTCTCACACTATTGCCAGCCTTGCTATCAGCAACAGTTGTTGATAAAGTAACTGCAGAACTGGAGTCGTGTGGATTCCATTGCTTAACAGCGGCCATTGGTGGACAAGGTGTTCAAGTTTGCTTTGGTGGTCATCCTGAGAATTATGGAACCACTAACCAGAAGTGGCACTCACTCACTCACTCACATATGGAGAAAGACTCAGATTATGGAGCTTTCACAGAGAAATTCCTTCTGCAACCAAGCTCTTCATCTCATGATCTTCCCTTGAGTGGCCTCACCTTTGCTGTCAAAGACATATTTGATGTGGCTGGATATGTGACTGGATTTGGAAATCCTGATTGGGCAAGGACTCACCCAGCTGCCGAATCGACAGCTCCTTCTGTTTCGACAATCTTAAAAGGAGGTGCCACATGTATTGGTAAAACTGTCATGGATGAAATGGCGTACAGTATAAATGGAGAGAACAAACATTATGGTACGCTGGTAAATCCATGTGCACCAGATAGGGTGCCTGGAGGATCTTCTAGTGGCTCTGCTGTTGTGGTGGGTGCAGACTTTGCAGATTTTTCCTTAGGAACTGACACTGGAGGAAGTGTAAGAGTTCCTGCTTCATATTGTGGAATTTTTGGGTTCCGACCTTCTCATGGTGTCATTTCTACTTCTGGAGTCGTTCCTATGGCACAAAGTCTTGATACTGTGGGATGGTTCGCTAGGGATCCTGTGGTTTTGAGTAAAGTAGGACGGGCATTACTGCAAATTCCTGATGCGCATCCTGTCAGACCAGCTCAGTTGATCATTGCTGAAGACTGTTTCCAGCTTTCAAGCATTCCAAGCGATCGAGTAAAACAACTACTTGTTCACTCAGTGGAGAAGTTATTTGGGGGTCATGTTTTAAAGCAAGCAAACCTTGGGGATGTCGTGAAGGACAAGGTTCCAAGTTTGAACTGTTTCTTCGATAAAGGAAATAGAAGTCAAGAGGATAACATACCATCCTTAACAGCCCTATCAAGTGCCATGCGAACACTCCTAAGGCATGAATTCAAGAACAACCATGGTGAATGGGTCATTACAGTCAGACCTGATTTAGGTCCTGGGATATCAGAACGTGTATGGGAAGCCGTCAGGGCAGCAGATGAAAATATTGGTGTTTGTCACTCCGTGAAGTCCGAACTATGTGCTGCTCTTACTGAACTTCTTGGGGATGCTGGTGTCCTTGCAATTCCTACAGTTCCAGGGCCTCCGCCAAAACTACAAATGGATCCTACTACACTTGAAACATTTCGCGCCAGGGCTTTTAGCTTGTTGTCCATTGCCGGGTTATCTGGATTCTGCCAGGTGAACATACCACTAGGCATGTACGAAGACCTACCTGTGTCGGTTTCCTTGCTGGCAAAGCACGGCTCAGATGGATTCCTGCTCAGTCTTGTGGAGACTCTCTATGCCACTCTCAAAGAACAAGTAGAAAGTTTGAAATCGCATCCTTGTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004040 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016053 GO:0016787 GO:0016810 GO:0016811 GO:0018130 GO:0019438 GO:0019752 GO:0031974 GO:0031981 GO:0032787 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043864 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00360 ko00380 ko00627 ko00643 ko01120 map00330 map00360 map00380 map00627 map00643 map01120

Pfam Domains

Protein Families

Amidase

Protein Analysis

759

Amino Acids

80.44

Weight (kDa)

5.86

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amidase	PF01425	346 - 501	1.2e-52	Amidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08980
fragaria_vesca	FvH4_6g05640 FvH4_6g05640 FvH4_6g05640 FvH4_6g05640
malus_domestica	MD00G1147100.v1.1 MD00G1147200.v1.1 MD00G1192400.v1.1 MD04G1207000.v1.1 MD12G1220800.v1.1 MD12G1220900.v1.1 MD12G1221100.v1.1
prunus_persica	Prupe.6G327700_v2.0.a1 Prupe.6G327700_v2.0.a1
pyrus_communis	pycom04g18300 pycom12g20660 pycom12g20670 pycom12g20680 pycom12g20700 pycom12g20710 pycom12g20760
rosa_chinensis	RchiOBHm_Chr3g0454411 RchiOBHm_Chr3g0454431 RchiOBHm_Chr3g0454461 RchiOBHm_Chr3g0454491
rosa_laevigata	RLG00000025440 RLG00000025441 RLG00000025442
rosa_multiflora	Rmu_sc0007209.1_g000005 Rmu_sc0026738.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425030 Rroxscaffold_6G00425050
rosa_rugosa	Rorug02G0654600 Rorug02G0654700
rosa_samantha	Rh1BG006800 Rh3AG058700 Rh3AG059100 Rh3AG059200 Rh3BG060700 Rh3BG061100 Rh3BG061300 Rh3CG059500 Rh3CG059900 Rh3CG060100 Rh3DG060800 Rh3DG061000
rosa_wichuraiana	Rw3G004570 Rw3G004580 Rw3G004590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2275
AasI	GACNNNNNNGTC	1 cut(s)	377
Acc16I	TGCGCA	1 cut(s)	1554
AccB1I	GGYRCC	2 cut(s)	1190, 1294
AccB7I	CCANNNNNTGG	1 cut(s)	688
AccII	CGCG	2 cut(s)	578, 2070
AccIII	TCCGGA	1 cut(s)	86
AciI	CCGC	4 cut(s)	131, 578, 875, 2027
AclWI	GGATC	5 cut(s)	1312, 1496, 1509, 2039, 2052
AcoI	YGGCCR	2 cut(s)	56, 876
AcsI	RAATTY	4 cut(s)	1010, 1407, 1542, 1823
AcuI	CTGAAG	1 cut(s)	1608
AdeI	CACNNNGTG	3 cut(s)	320, 1651, 1945
AfaI	GTAC	3 cut(s)	1232, 1264, 2144
AfiI	CCNNNNNNNGG	6 cut(s)	604, 688, 1055, 1430, 1871, 2100
AflIII	ACRYGT	2 cut(s)	1196, 1891
AjnI	CCWGG	5 cut(s)	1297, 1876, 2017, 2072, 2118
AjuI	GAANNNNNNNTTGG	2 cut(s)	1108, 1140
AloI	GAACNNNNNNTCC	6 cut(s)	81, 113, 768, 800, 879, 911
AluBI	AGCT	9 cut(s)	28, 655, 998, 1029, 1145, 1160, 1571, 1603, 2085
AluI	AGCT	9 cut(s)	28, 655, 998, 1029, 1145, 1160, 1571, 1603, 2085
Alw21I	GWGCWC	2 cut(s)	30, 1285
Alw26I	GTCTC	1 cut(s)	2210
Alw44I	GTGCAC	1 cut(s)	1281
AlwI	GGATC	5 cut(s)	1312, 1496, 1509, 2039, 2052
Aor13HI	TCCGGA	1 cut(s)	86
AoxI	GGCC	6 cut(s)	56, 492, 606, 876, 1057, 2021
ApaLI	GTGCAC	1 cut(s)	1281
ApeKI	GCWGC	5 cut(s)	194, 311, 1145, 1913, 1964
ApoI	RAATTY	4 cut(s)	1010, 1407, 1542, 1823
Asp700I	GAANNNNTTC	3 cut(s)	717, 1733, 2064
AspLEI	GCGC	3 cut(s)	578, 1555, 2072
AspS9I	GGNCC	3 cut(s)	607, 1874, 2021
AsuC2I	CCSGG	1 cut(s)	2101
AsuHPI	GGTGA	5 cut(s)	347, 1054, 1130, 1853, 2134
AsuII	TTCGAA	1 cut(s)	724
AvaII	GGWCC	1 cut(s)	1874
AxyI	CCTNAGG	2 cut(s)	1357, 1814
BaeGI	GKGCMC	1 cut(s)	1285
BaeI	ACNNNNGTAYC	2 cut(s)	1254, 1287
BalI	TGGCCA	1 cut(s)	58
BamHI	GGATCC	2 cut(s)	1501, 2044
BanI	GGYRCC	2 cut(s)	1190, 1294
BanII	GRGCYC	2 cut(s)	30, 769
BauI	CACGAG	1 cut(s)	768
BbsI	GAAGAC	2 cut(s)	1596, 2154
Bbv12I	GWGCWC	2 cut(s)	30, 1285
BbvI	GCAGC	5 cut(s)	181, 298, 1132, 1925, 1951
BccI	CCATC	7 cut(s)	115, 367, 599, 652, 1482, 1783, 2186
BceAI	ACGGC	2 cut(s)	1889, 2200
BcgI	CGANNNNNNTGC	4 cut(s)	620, 654, 1943, 1977
BciT130I	CCWGG	5 cut(s)	1299, 1878, 2019, 2074, 2120
BclI	TGATCA	3 cut(s)	138, 399, 1578
BcnI	CCSGG	1 cut(s)	2101
BcoDI	GTCTC	1 cut(s)	2210
BfaI	CTAG	4 cut(s)	44, 1311, 1497, 2135
BfmI	CTRYAG	2 cut(s)	837, 2010
BglI	GCCNNNNNGGC	1 cut(s)	1910
BisI	GCNGC	6 cut(s)	195, 312, 876, 1146, 1914, 1965
BlsI	GCNGC	6 cut(s)	196, 313, 877, 1147, 1915, 1966
Bme1390I	CCNGG	6 cut(s)	1299, 1878, 2019, 2074, 2101, 2120
Bme18I	GGWCC	1 cut(s)	1874
BmgT120I	GGNCC	3 cut(s)	607, 1874, 2021
BmiI	GGNNCC	8 cut(s)	609, 934, 1192, 1296, 1418, 1503, 1719, 2046
BmrFI	CCNGG	6 cut(s)	1299, 1878, 2019, 2074, 2101, 2120
BmsI	GCATC	8 cut(s)	266, 526, 538, 628, 1540, 1564, 1978, 2272
BpiI	GAAGAC	2 cut(s)	1596, 2154
BplI	GAGNNNNNCTC	2 cut(s)	968, 1000
BpmI	CTGGAG	6 cut(s)	44, 219, 866, 1320, 1392, 1470
Bpu14I	TTCGAA	1 cut(s)	724
BpuEI	CTTGAG	1 cut(s)	1072
BpuMI	CCSGG	1 cut(s)	2101
BsaBI	GATNNNNATC	1 cut(s)	1554
BsaJI	CCNNGG	8 cut(s)	235, 349, 670, 1693, 1837, 1877, 2018, 2073
BsaWI	WCCGGW	1 cut(s)	86
BsaXI	ACNNNNNCTCC	4 cut(s)	768, 798, 1365, 1395
Bsc4I	CCNNNNNNNGG	6 cut(s)	604, 688, 1055, 1430, 1871, 2100
Bse1I	ACTGG	5 cut(s)	27, 59, 849, 1111, 1375
Bse21I	CCTNAGG	2 cut(s)	1357, 1814
Bse3DI	GCAATG	3 cut(s)	862, 1581, 2094
Bse8I	GATNNNNATC	1 cut(s)	1554
BseAI	TCCGGA	1 cut(s)	86
BseBI	CCWGG	5 cut(s)	1299, 1878, 2019, 2074, 2120
BseDI	CCNNGG	8 cut(s)	235, 349, 670, 1693, 1837, 1877, 2018, 2073
BseJI	GATNNNNATC	1 cut(s)	1554
BseLI	CCNNNNNNNGG	6 cut(s)	604, 688, 1055, 1430, 1871, 2100
BseMI	GCAATG	3 cut(s)	862, 1581, 2094
BseMII	CTCAG	7 cut(s)	390, 912, 999, 1586, 1662, 2202, 2218
BseNI	ACTGG	5 cut(s)	27, 59, 849, 1111, 1375
BseSI	GKGCMC	1 cut(s)	1285
BseXI	GCAGC	5 cut(s)	181, 298, 1132, 1925, 1951
BseYI	CCCAGC	1 cut(s)	1141
BsgI	GTGCAG	2 cut(s)	297, 1356
Bsh1236I	CGCG	2 cut(s)	578, 2070
Bsh1285I	CGRYCG	1 cut(s)	1624
BshFI	GGCC	6 cut(s)	58, 494, 608, 878, 1059, 2023
BshNI	GGYRCC	2 cut(s)	1190, 1294
BsiEI	CGRYCG	1 cut(s)	1624
BsiHKAI	GWGCWC	2 cut(s)	30, 1285
BsiSI	CCGG	2 cut(s)	87, 2100
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	6 cut(s)	604, 688, 1055, 1430, 1871, 2100
BsmAI	GTCTC	1 cut(s)	2210
BsmFI	GGGAC	1 cut(s)	259
BsmI	GAATGC	2 cut(s)	326, 1611
BsnI	GGCC	6 cut(s)	58, 494, 608, 878, 1059, 2023
Bsp119I	TTCGAA	1 cut(s)	724
Bsp1286I	GDGCHC	3 cut(s)	30, 769, 1285
Bsp13I	TCCGGA	1 cut(s)	86
Bsp143I	GATC	9 cut(s)	138, 399, 410, 1042, 1304, 1501, 1578, 1621, 2044
Bsp19I	CCATGG	2 cut(s)	349, 1837
BspACI	CCGC	4 cut(s)	131, 578, 875, 2027
BspANI	GGCC	6 cut(s)	58, 494, 608, 878, 1059, 2023
BspCNI	CTCAG	7 cut(s)	389, 913, 998, 1585, 1661, 2201, 2217
BspEI	TCCGGA	1 cut(s)	86
BspFNI	CGCG	2 cut(s)	578, 2070
BspHI	TCATGA	1 cut(s)	1039
BspLI	GGNNCC	8 cut(s)	609, 934, 1192, 1296, 1418, 1503, 1719, 2046
BspMAI	CTGCAG	1 cut(s)	841
BspPI	GGATC	5 cut(s)	1312, 1496, 1509, 2039, 2052
BspQI	GCTCTTC	2 cut(s)	645, 1036
BspT104I	TTCGAA	1 cut(s)	724
BspT107I	GGYRCC	2 cut(s)	1190, 1294
BsrDI	GCAATG	3 cut(s)	862, 1581, 2094
BsrI	ACTGG	5 cut(s)	27, 59, 849, 1111, 1375
BssECI	CCNNGG	8 cut(s)	235, 349, 670, 1693, 1837, 1877, 2018, 2073
BssMI	GATC	9 cut(s)	138, 399, 410, 1042, 1304, 1501, 1578, 1621, 2044
BssSI	CACGAG	1 cut(s)	768
BssT1I	CCWWGG	5 cut(s)	235, 349, 670, 1693, 1837
Bst2BI	CACGAG	1 cut(s)	768
Bst2UI	CCWGG	5 cut(s)	1299, 1878, 2019, 2074, 2120
Bst4CI	ACNGT	8 cut(s)	820, 1213, 1235, 1483, 1595, 1733, 1858, 2014
Bst6I	CTCTTC	2 cut(s)	645, 1036
BstAPI	GCANNNNNTGC	1 cut(s)	1343
BstBI	TTCGAA	1 cut(s)	724
BstC8I	GCNNGC	4 cut(s)	255, 801, 1686, 2175
BstDSI	CCRYGG	2 cut(s)	349, 1837
BstENI	CCTNNNNNAGG	1 cut(s)	1869
BstFNI	CGCG	2 cut(s)	578, 2070
BstHHI	GCGC	3 cut(s)	578, 1555, 2072
BstKTI	GATC	9 cut(s)	141, 402, 413, 1045, 1307, 1504, 1581, 1624, 2047
BstMAI	GTCTC	1 cut(s)	2210
BstMBI	GATC	9 cut(s)	138, 399, 410, 1042, 1304, 1501, 1578, 1621, 2044
BstMCI	CGRYCG	1 cut(s)	1624
BstMWI	GCNNNNNNNGC	7 cut(s)	500, 584, 805, 1343, 1617, 1910, 2179
BstNI	CCWGG	5 cut(s)	1299, 1878, 2019, 2074, 2120
BstNSI	RCATGY	3 cut(s)	445, 1200, 2143
BstSCI	CCNGG	6 cut(s)	1297, 1876, 2017, 2072, 2099, 2118
BstSFI	CTRYAG	2 cut(s)	837, 2010
BstSLI	GKGCMC	1 cut(s)	1285
BstUI	CGCG	2 cut(s)	578, 2070
BstV1I	GCAGC	5 cut(s)	181, 298, 1132, 1925, 1951
BstV2I	GAAGAC	2 cut(s)	1596, 2154
BstX2I	RGATCY	3 cut(s)	1304, 1501, 2044
BstXI	CCANNNNNNTGG	1 cut(s)	242
BstYI	RGATCY	3 cut(s)	1304, 1501, 2044
Bsu36I	CCTNAGG	2 cut(s)	1357, 1814
BsuRI	GGCC	6 cut(s)	58, 494, 608, 878, 1059, 2023
BtgI	CCRYGG	2 cut(s)	349, 1837
BtsIMutI	CAGTG	2 cut(s)	1368, 1656
Cac8I	GCNNGC	4 cut(s)	255, 801, 1686, 2175
CciI	TCATGA	1 cut(s)	1039
CfoI	GCGC	3 cut(s)	578, 1555, 2072
Cfr13I	GGNCC	3 cut(s)	607, 1874, 2021
Csp6I	GTAC	3 cut(s)	1231, 1263, 2143
CspCI	CAANNNNNGTGG	2 cut(s)	1183, 1218
CviQI	GTAC	3 cut(s)	1231, 1263, 2143
DpnI	GATC	9 cut(s)	140, 401, 412, 1044, 1306, 1503, 1580, 1623, 2046
DpnII	GATC	9 cut(s)	138, 399, 410, 1042, 1304, 1501, 1578, 1621, 2044
DraI	TTTAAA	1 cut(s)	1680
DraIII	CACNNNGTG	3 cut(s)	320, 1651, 1945
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
EaeI	YGGCCR	2 cut(s)	56, 876
Eam1104I	CTCTTC	2 cut(s)	645, 1036
EarI	CTCTTC	2 cut(s)	645, 1036
EciI	GGCGGA	1 cut(s)	2016
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	5 cut(s)	235, 349, 670, 1693, 1837
Eco147I	AGGCCT	1 cut(s)	494
Eco24I	GRGCYC	2 cut(s)	30, 769
Eco32I	GATATC	1 cut(s)	1884
Eco47I	GGWCC	1 cut(s)	1874
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	1608
Eco81I	CCTNAGG	2 cut(s)	1357, 1814
EcoICRI	GAGCTC	1 cut(s)	28
EcoNI	CCTNNNNNAGG	1 cut(s)	1869
EcoO109I	RGGNCCY	3 cut(s)	607, 1874, 2021
EcoRI	GAATTC	1 cut(s)	1823
EcoRII	CCWGG	5 cut(s)	1297, 1876, 2017, 2072, 2118
EcoRV	GATATC	1 cut(s)	1884
EcoT14I	CCWWGG	5 cut(s)	235, 349, 670, 1693, 1837
EcoT22I	ATGCAT	1 cut(s)	689
EcoT38I	GRGCYC	2 cut(s)	30, 769
ErhI	CCWWGG	5 cut(s)	235, 349, 670, 1693, 1837
FalI	AAGNNNNNCTT	2 cut(s)	1677, 1709
FaqI	GGGAC	1 cut(s)	259
FauNDI	CATATG	2 cut(s)	388, 972
FbaI	TGATCA	3 cut(s)	138, 399, 1578
Fnu4HI	GCNGC	6 cut(s)	195, 312, 876, 1146, 1914, 1965
FriOI	GRGCYC	2 cut(s)	30, 769
Fsp4HI	GCNGC	6 cut(s)	195, 312, 876, 1146, 1914, 1965
FspAI	RTGCGCAY	1 cut(s)	1554
FspBI	CTAG	4 cut(s)	44, 1311, 1497, 2135
FspI	TGCGCA	1 cut(s)	1554
GlaI	GCGC	3 cut(s)	577, 1554, 2071
GluI	GCNGC	6 cut(s)	195, 312, 876, 1146, 1914, 1965
GsaI	CCCAGC	1 cut(s)	1145
GsuI	CTGGAG	6 cut(s)	44, 219, 866, 1320, 1392, 1470
HaeIII	GGCC	6 cut(s)	58, 494, 608, 878, 1059, 2023
HapII	CCGG	2 cut(s)	87, 2100
HhaI	GCGC	3 cut(s)	578, 1555, 2072
Hin6I	GCGC	3 cut(s)	576, 1553, 2070
HinP1I	GCGC	3 cut(s)	576, 1553, 2070
HincII	GTYRAC	1 cut(s)	759
HindII	GTYRAC	1 cut(s)	759
HpaII	CCGG	2 cut(s)	87, 2100
HphI	GGTGA	5 cut(s)	347, 1054, 1130, 1853, 2134
Hpy166II	GTNNAC	5 cut(s)	759, 887, 1283, 1645, 2125
Hpy188I	TCNGA	8 cut(s)	188, 988, 1421, 1565, 1862, 1888, 1954, 2191
Hpy8I	GTNNAC	5 cut(s)	759, 887, 1283, 1645, 2125
HpyAV	CCTTC	5 cut(s)	628, 1025, 1173, 1434, 1702
HpyCH4III	ACNGT	8 cut(s)	820, 1213, 1235, 1483, 1595, 1733, 1858, 2014
HpyCH4IV	ACGT	1 cut(s)	1891
HpyF10VI	GCNNNNNNNGC	7 cut(s)	500, 584, 805, 1343, 1617, 1910, 2179
HpySE526I	ACGT	1 cut(s)	1891
HspAI	GCGC	3 cut(s)	576, 1553, 2070
Kpn2I	TCCGGA	1 cut(s)	86
Ksp22I	TGATCA	3 cut(s)	138, 399, 1578
Kzo9I	GATC	9 cut(s)	138, 399, 410, 1042, 1304, 1501, 1578, 1621, 2044
LguI	GCTCTTC	2 cut(s)	645, 1036
LmnI	GCTCC	4 cut(s)	25, 684, 995, 1165
Lsp1109I	GCAGC	5 cut(s)	181, 298, 1132, 1925, 1951
LweI	GCATC	8 cut(s)	266, 526, 538, 628, 1540, 1564, 1978, 2272
MaeI	CTAG	4 cut(s)	44, 1311, 1497, 2135
MaeII	ACGT	1 cut(s)	1891
MaeIII	GTNAC	5 cut(s)	508, 625, 832, 1102, 1937
MalI	GATC	9 cut(s)	140, 401, 412, 1044, 1306, 1503, 1580, 1623, 2046
MboI	GATC	9 cut(s)	138, 399, 410, 1042, 1304, 1501, 1578, 1621, 2044
MboII	GAAGA	9 cut(s)	170, 662, 713, 1023, 1037, 1299, 1601, 1729, 2159
MflI	RGATCY	3 cut(s)	1304, 1501, 2044
MhlI	GDGCHC	3 cut(s)	30, 769, 1285
MlsI	TGGCCA	1 cut(s)	58
MluNI	TGGCCA	1 cut(s)	58
MlyI	GAGTC	7 cut(s)	210, 241, 857, 977, 1129, 1461, 2212
MmeI	TCCRAC	1 cut(s)	1444
Mox20I	TGGCCA	1 cut(s)	58
Mph1103I	ATGCAT	1 cut(s)	689
MroI	TCCGGA	1 cut(s)	86
MroXI	GAANNNNTTC	3 cut(s)	717, 1733, 2064
MscI	TGGCCA	1 cut(s)	58
MseI	TTAA	7 cut(s)	72, 524, 555, 869, 1181, 1679, 1781
MslI	CAYNNNNRTG	1 cut(s)	534
Msp20I	TGGCCA	1 cut(s)	58
MspA1I	CMGCKG	3 cut(s)	131, 875, 1145
MspI	CCGG	2 cut(s)	87, 2100
MspR9I	CCNGG	6 cut(s)	1299, 1878, 2019, 2074, 2101, 2120
Mva1269I	GAATGC	2 cut(s)	326, 1611
MvaI	CCWGG	5 cut(s)	1299, 1878, 2019, 2074, 2120
MvnI	CGCG	2 cut(s)	578, 2070
MwoI	GCNNNNNNNGC	7 cut(s)	500, 584, 805, 1343, 1617, 1910, 2179
NciI	CCSGG	1 cut(s)	2101
NcoI	CCATGG	2 cut(s)	349, 1837
NdeI	CATATG	2 cut(s)	388, 972
NdeII	GATC	9 cut(s)	138, 399, 410, 1042, 1304, 1501, 1578, 1621, 2044
NlaIV	GGNNCC	8 cut(s)	609, 934, 1192, 1296, 1418, 1503, 1719, 2046
NmuCI	GTSAC	2 cut(s)	1102, 1937
NsbI	TGCGCA	1 cut(s)	1554
NsiI	ATGCAT	1 cut(s)	689
NspI	RCATGY	3 cut(s)	445, 1200, 2143
NspV	TTCGAA	1 cut(s)	724
PagI	TCATGA	1 cut(s)	1039
PceI	AGGCCT	1 cut(s)	494
PciI	ACATGT	1 cut(s)	1196
PciSI	GCTCTTC	2 cut(s)	645, 1036
PctI	GAATGC	2 cut(s)	326, 1611
PdmI	GAANNNNTTC	3 cut(s)	717, 1733, 2064
PfeI	GAWTC	5 cut(s)	566, 858, 1151, 2112, 2196
PflMI	CCANNNNNTGG	1 cut(s)	688
PkrI	GCNGC	6 cut(s)	196, 313, 877, 1147, 1915, 1966
Ple19I	CGATCG	1 cut(s)	1624
PleI	GAGTC	7 cut(s)	209, 241, 856, 977, 1129, 1460, 2212
PpsI	GAGTC	7 cut(s)	209, 241, 856, 977, 1129, 1460, 2212
PpuMI	RGGWCCY	1 cut(s)	1874
PscI	ACATGT	1 cut(s)	1196
PsiI	TTATAA	1 cut(s)	2275
Psp124BI	GAGCTC	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	1874
Psp6I	CCWGG	5 cut(s)	1297, 1876, 2017, 2072, 2118
PspFI	CCCAGC	1 cut(s)	1141
PspGI	CCWGG	5 cut(s)	1297, 1876, 2017, 2072, 2118
PspN4I	GGNNCC	8 cut(s)	609, 934, 1192, 1296, 1418, 1503, 1719, 2046
PspPI	GGNCC	3 cut(s)	607, 1874, 2021
PspPPI	RGGWCCY	1 cut(s)	1874
PstI	CTGCAG	1 cut(s)	841
PsuI	RGATCY	3 cut(s)	1304, 1501, 2044
PvuI	CGATCG	1 cut(s)	1624
PvuII	CAGCTG	1 cut(s)	1145
RsaI	GTAC	3 cut(s)	1232, 1264, 2144
RsaNI	GTAC	3 cut(s)	1231, 1263, 2143
RseI	CAYNNNNRTG	1 cut(s)	534
SacI	GAGCTC	1 cut(s)	30
SapI	GCTCTTC	2 cut(s)	645, 1036
SaqAI	TTAA	7 cut(s)	72, 524, 555, 869, 1181, 1679, 1781
SatI	GCNGC	6 cut(s)	195, 312, 876, 1146, 1914, 1965
Sau3AI	GATC	9 cut(s)	138, 399, 410, 1042, 1304, 1501, 1578, 1621, 2044
Sau96I	GGNCC	3 cut(s)	607, 1874, 2021
SchI	GAGTC	7 cut(s)	210, 241, 857, 977, 1129, 1461, 2212
ScrFI	CCNGG	6 cut(s)	1299, 1878, 2019, 2074, 2101, 2120
SduI	GDGCHC	3 cut(s)	30, 769, 1285
SfaNI	GCATC	8 cut(s)	266, 526, 538, 628, 1540, 1564, 1978, 2272
SfcI	CTRYAG	2 cut(s)	837, 2010
SfuI	TTCGAA	1 cut(s)	724
SinI	GGWCC	1 cut(s)	1874
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	1 cut(s)	1051
SmoI	CTYRAG	1 cut(s)	1051
SseBI	AGGCCT	1 cut(s)	494
SsiI	CCGC	4 cut(s)	131, 578, 875, 2027
SspI	AATATT	2 cut(s)	169, 1927
SspMI	CTAG	4 cut(s)	44, 1311, 1497, 2135
SstI	GAGCTC	1 cut(s)	30
StuI	AGGCCT	1 cut(s)	494
StyD4I	CCNGG	6 cut(s)	1297, 1876, 2017, 2072, 2099, 2118
StyI	CCWWGG	5 cut(s)	235, 349, 670, 1693, 1837
TaaI	ACNGT	8 cut(s)	820, 1213, 1235, 1483, 1595, 1733, 1858, 2014
TaiI	ACGT	1 cut(s)	1894
TaqI	TCGA	7 cut(s)	437, 711, 724, 1154, 1172, 1624, 1740
TauI	GCSGC	1 cut(s)	878
TfiI	GAWTC	5 cut(s)	566, 858, 1151, 2112, 2196
Tru1I	TTAA	7 cut(s)	72, 524, 555, 869, 1181, 1679, 1781
Tru9I	TTAA	7 cut(s)	72, 524, 555, 869, 1181, 1679, 1781
TscAI	CASTG	2 cut(s)	1375, 1656
TseFI	GTSAC	2 cut(s)	1102, 1937
TseI	GCWGC	5 cut(s)	194, 311, 1145, 1913, 1964
Tsp45I	GTSAC	2 cut(s)	1102, 1937
TspDTI	ATGAA	8 cut(s)	216, 630, 680, 1023, 1236, 1386, 1836, 1935
TspGWI	ACGGA	1 cut(s)	1933
TspRI	CASTG	2 cut(s)	1375, 1656
Van91I	CCANNNNNTGG	1 cut(s)	688
VneI	GTGCAC	1 cut(s)	1281
VpaK11BI	GGWCC	1 cut(s)	1874
XagI	CCTNNNNNAGG	1 cut(s)	1869
XapI	RAATTY	4 cut(s)	1010, 1407, 1542, 1823
XceI	RCATGY	3 cut(s)	445, 1200, 2143
XmnI	GAANNNNTTC	3 cut(s)	717, 1733, 2064
XspI	CTAG	4 cut(s)	44, 1311, 1497, 2135
Zsp2I	ATGCAT	1 cut(s)	689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.