Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001680

Physical Location & Seq

Genomic Coordinates Forward (+)

852111 .. 853119

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG006800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAGGAAGAAGCTCGATACGCGTTTCCCTGCTGTAAATAATGATGGTTTACTTAGACTGGAGCTCAAGGATATTGGATTAGAGTTTTCGTGGCCAGTTGTTAGGATTAAGGAAGCACTATCCGGAATAGATGTTCCCAACCCATCAACACCTACCTCTTGTCCGGCGGAGGCGATCAAATCACTTGCTATTTTAGTTGAAGAACTAAACATTCCGGAGGCAAAAATCGGAATTGCTGCTGGAGTCTTGGCTTTTCTTTGGCTATATTCATGTATCCAAGGATTTAAGCCTGCGACAGTTATTATCAGTTCGGAACTTCCTTTGGGTTCAGGTCTTGGTTCATCAACCCATCAGCATCTTTGTTCCCAAACTGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

126

Amino Acids

13.57

Weight (kDa)

5.36

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08980
fragaria_vesca	FvH4_6g05640 FvH4_6g05640 FvH4_6g05640 FvH4_6g05640
malus_domestica	MD00G1147100.v1.1 MD00G1147200.v1.1 MD00G1192400.v1.1 MD04G1207000.v1.1 MD12G1220800.v1.1 MD12G1220900.v1.1 MD12G1221100.v1.1
prunus_persica	Prupe.6G327700_v2.0.a1 Prupe.6G327700_v2.0.a1
pyrus_communis	pycom04g18300 pycom12g20660 pycom12g20670 pycom12g20680 pycom12g20700 pycom12g20710 pycom12g20760
rosa_chinensis	RchiOBHm_Chr3g0454411 RchiOBHm_Chr3g0454431 RchiOBHm_Chr3g0454461 RchiOBHm_Chr3g0454491
rosa_laevigata	RLG00000025440 RLG00000025441 RLG00000025442
rosa_multiflora	Rmu_sc0007209.1_g000005 Rmu_sc0026738.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425030 Rroxscaffold_6G00425050
rosa_rugosa	Rorug02G0654600 Rorug02G0654700
rosa_samantha	Rh1BG006800 Rh3AG058700 Rh3AG059100 Rh3AG059200 Rh3BG060700 Rh3BG061100 Rh3BG061300 Rh3CG059500 Rh3CG059900 Rh3CG060100 Rh3DG060800 Rh3DG061000
rosa_wichuraiana	Rw3G004570 Rw3G004580 Rw3G004590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	22
AccIII	TCCGGA	2 cut(s)	122, 214
AciI	CCGC	1 cut(s)	167
AcoI	YGGCCR	1 cut(s)	92
AflIII	ACRYGT	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	200
AloI	GAACNNNNNNTCC	2 cut(s)	117, 149
AluBI	AGCT	2 cut(s)	13, 64
AluI	AGCT	2 cut(s)	13, 64
Alw21I	GWGCWC	1 cut(s)	66
Aor13HI	TCCGGA	2 cut(s)	122, 214
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	236
BalI	TGGCCA	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	3 cut(s)	38, 151, 357
BciVI	GTATCC	1 cut(s)	284
BfuI	GTATCC	1 cut(s)	284
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
BmsI	GCATC	1 cut(s)	364
BpmI	CTGGAG	2 cut(s)	80, 261
BpuEI	CTTGAG	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	277
BsaWI	WCCGGW	2 cut(s)	122, 214
Bse1I	ACTGG	2 cut(s)	63, 95
BseAI	TCCGGA	2 cut(s)	122, 214
BseDI	CCNNGG	1 cut(s)	277
BseNI	ACTGG	2 cut(s)	63, 95
BseXI	GCAGC	1 cut(s)	223
Bsh1236I	CGCG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	3 cut(s)	123, 164, 215
BsnI	GGCC	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp13I	TCCGGA	2 cut(s)	122, 214
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	1 cut(s)	94
BspEI	TCCGGA	2 cut(s)	122, 214
BspFNI	CGCG	1 cut(s)	22
BsrI	ACTGG	2 cut(s)	63, 95
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	277
Bst4CI	ACNGT	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	53
BstFNI	CGCG	1 cut(s)	22
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	223
BsuI	GTATCC	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	291
CviAII	CATG	1 cut(s)	270
CviJI	RGCY	6 cut(s)	13, 64, 94, 251, 262, 289
CviKI_1	RGCY	6 cut(s)	13, 64, 94, 251, 262, 289
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
EaeI	YGGCCR	1 cut(s)	92
EciI	GGCGGA	1 cut(s)	182
Ecl136II	GAGCTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	64
EcoICRI	GAGCTC	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	1 cut(s)	273
FaiI	YATR	2 cut(s)	265, 271
FatI	CATG	1 cut(s)	269
Fnu4HI	GCNGC	1 cut(s)	237
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	237
GluI	GCNGC	1 cut(s)	237
GsuI	CTGGAG	2 cut(s)	80, 261
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	3 cut(s)	123, 164, 215
Hin1II	CATG	1 cut(s)	273
HinfI	GANTC	1 cut(s)	243
HpaII	CCGG	3 cut(s)	123, 164, 215
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	2 cut(s)	230, 313
Hpy188III	TCNNGA	2 cut(s)	123, 215
Hpy8I	GTNNAC	1 cut(s)	50
HpyCH4III	ACNGT	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	273
Kpn2I	TCCGGA	2 cut(s)	122, 214
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	9 cut(s)	42, 44, 108, 136, 177, 225, 228, 303, 315
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	364
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	2 cut(s)	19, 212
MhlI	GDGCHC	1 cut(s)	66
MlsI	TGGCCA	1 cut(s)	94
MluCI	AATT	1 cut(s)	231
MluI	ACGCGT	1 cut(s)	20
MluNI	TGGCCA	1 cut(s)	94
MlyI	GAGTC	1 cut(s)	252
MnlI	CCTC	3 cut(s)	163, 166, 211
Mox20I	TGGCCA	1 cut(s)	94
MroI	TCCGGA	2 cut(s)	122, 214
MscI	TGGCCA	1 cut(s)	94
MseI	TTAA	2 cut(s)	108, 285
Msp20I	TGGCCA	1 cut(s)	94
MspI	CCGG	3 cut(s)	123, 164, 215
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	19
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	1 cut(s)	273
PkrI	GCNGC	1 cut(s)	238
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	66
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	2 cut(s)	108, 285
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	174
SchI	GAGTC	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	5 cut(s)	15, 66, 154, 158, 334
SfaNI	GCATC	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	1 cut(s)	231
SsiI	CCGC	1 cut(s)	167
SstI	GAGCTC	1 cut(s)	66
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	298
TaqI	TCGA	1 cut(s)	15
TasI	AATT	1 cut(s)	231
Tru1I	TTAA	2 cut(s)	108, 285
Tru9I	TTAA	2 cut(s)	108, 285
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	258, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.