Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0016998

Physical Location & Seq

Genomic Coordinates Forward (+)

4124934 .. 4125713

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG059700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTTATCATCTGTTGAGATATCTTTTGAGATATTTAGCTTCCTTATCTGTCTGGACTTTGTTCCTGAAACAGGGAATATGATCAAGTTTAGATCAGTCAGTTTGACACGCCTCAAATCGAACATGCCACTCAAAATGCTCATGACTAACACAAAAGTTGGGAGGAACACGAAGGCTTTAGTTGCTGGTGTTACAGAGAGGACATTAAGGCATCCAGATGCTACGGCTTCTGTGTTTAATGCAGTTGATTCTATCAGCGTGGAATTGGCTACCATCATCCAATTAGAGACCCCTGATGAAATCTCTGCAACCGAGAAGGATGCGAAAATAGAAGAGCTGATGGAAATGAACCAAGGTTTGCTCCAATGCATGGGGTTCAGCCATGCTTCAATCGAAATTCGAACTACACTCAAATACAAGTTGGCTTTCAAGTTGACAGGAGCTCGTGGTGGAGGTTCTGTTCTCACACTATTGCCAACCTTGCTATCAGCAACAGTTGTTGATAAAGTAACTGCAGAACTGGAGTCGTGTGGATTCCATTGCTTAACAGCGGCCATTGGTGGACAAGGTGTTCAAGTTTTCTTCGGTGGTTCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

199

Amino Acids

21.46

Weight (kDa)

5.94

Isoelectric Point (pI)

32.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016998)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0454481 RchiOBHm_Chr7g0220941
rosa_laevigata	RLG00000002187
rosa_multiflora	Rmu_sc0007209.1_g000007 Rmu_sc0013686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238860
rosa_rugosa	Rorug02G0654700
rosa_samantha	Rh3AG058900 Rh3BG060800 Rh3CG059700 Rh3DG060900 Rh7AG338700 Rh7BG340300 Rh7CG356800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	370
AciI	CCGC	1 cut(s)	551
AcoI	YGGCCR	1 cut(s)	552
AcsI	RAATTY	1 cut(s)	396
AfiI	CCNNNNNNNGG	2 cut(s)	71, 370
AgsI	TTSAA	3 cut(s)	390, 430, 575
AloI	GAACNNNNNNTCC	4 cut(s)	444, 476, 555, 587
AluBI	AGCT	3 cut(s)	39, 337, 443
AluI	AGCT	3 cut(s)	39, 337, 443
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	1 cut(s)	281
AoxI	GGCC	1 cut(s)	552
ApoI	RAATTY	1 cut(s)	396
AsuII	TTCGAA	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	445
BauI	CACGAG	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	445
BccI	CCATC	2 cut(s)	281, 334
BceAI	ACGGC	1 cut(s)	240
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BclI	TGATCA	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	281
BfmI	CTRYAG	1 cut(s)	513
BisI	GCNGC	1 cut(s)	552
BlsI	GCNGC	1 cut(s)	553
BmsI	GCATC	3 cut(s)	208, 220, 310
BpmI	CTGGAG	1 cut(s)	542
Bpu14I	TTCGAA	1 cut(s)	400
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	352
BsaXI	ACNNNNNCTCC	2 cut(s)	444, 474
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 370
Bse1I	ACTGG	1 cut(s)	525
Bse3DI	GCAATG	1 cut(s)	538
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	4 cut(s)	211, 276, 325, 593
BseLI	CCNNNNNNNGG	2 cut(s)	71, 370
BseMI	GCAATG	1 cut(s)	538
BseNI	ACTGG	1 cut(s)	525
BshFI	GGCC	1 cut(s)	554
BsiHKAI	GWGCWC	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	71, 370
BsmAI	GTCTC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	554
Bso31I	GGTCTC	1 cut(s)	281
Bsp119I	TTCGAA	1 cut(s)	400
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	2 cut(s)	81, 92
BspACI	CCGC	1 cut(s)	551
BspANI	GGCC	1 cut(s)	554
BspHI	TCATGA	1 cut(s)	141
BspMAI	CTGCAG	1 cut(s)	517
BspQI	GCTCTTC	1 cut(s)	327
BspT104I	TTCGAA	1 cut(s)	400
BspTNI	GGTCTC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	538
BsrI	ACTGG	1 cut(s)	525
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	2 cut(s)	81, 92
BssSI	CACGAG	1 cut(s)	444
BssT1I	CCWWGG	1 cut(s)	352
Bst2BI	CACGAG	1 cut(s)	444
Bst4CI	ACNGT	1 cut(s)	496
Bst6I	CTCTTC	1 cut(s)	327
BstBI	TTCGAA	1 cut(s)	400
BstENI	CCTNNNNNAGG	1 cut(s)	69
BstF5I	GGATG	4 cut(s)	211, 276, 325, 593
BstKTI	GATC	2 cut(s)	84, 95
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	2 cut(s)	81, 92
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 481
BstNSI	RCATGY	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	513
BsuRI	GGCC	1 cut(s)	554
BtsCI	GGATG	4 cut(s)	211, 276, 325, 593
CciI	TCATGA	1 cut(s)	141
CviAII	CATG	4 cut(s)	124, 142, 370, 383
CviJI	RGCY	9 cut(s)	39, 176, 227, 269, 337, 381, 425, 443, 554
CviKI_1	RGCY	9 cut(s)	39, 176, 227, 269, 337, 381, 425, 443, 554
DpnI	GATC	2 cut(s)	83, 94
DpnII	GATC	2 cut(s)	81, 92
EaeI	YGGCCR	1 cut(s)	552
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Ecl136II	GAGCTC	1 cut(s)	443
Eco130I	CCWWGG	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	445
Eco31I	GGTCTC	1 cut(s)	281
Eco32I	GATATC	1 cut(s)	21
Eco53kI	GAGCTC	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	443
EcoNI	CCTNNNNNAGG	1 cut(s)	69
EcoRV	GATATC	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	352
EcoT22I	ATGCAT	1 cut(s)	371
EcoT38I	GRGCYC	1 cut(s)	445
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	4 cut(s)	127, 145, 373, 386
FaiI	YATR	5 cut(s)	80, 125, 143, 371, 384
FatI	CATG	4 cut(s)	123, 141, 369, 382
FbaI	TGATCA	1 cut(s)	81
Fnu4HI	GCNGC	1 cut(s)	552
FokI	GGATG	4 cut(s)	198, 263, 332, 580
FriOI	GRGCYC	1 cut(s)	445
Fsp4HI	GCNGC	1 cut(s)	552
GluI	GCNGC	1 cut(s)	552
GsuI	CTGGAG	1 cut(s)	542
HaeIII	GGCC	1 cut(s)	554
Hin1II	CATG	4 cut(s)	127, 145, 373, 386
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HinfI	GANTC	3 cut(s)	248, 524, 534
Hpy166II	GTNNAC	2 cut(s)	435, 563
Hpy188III	TCNNGA	5 cut(s)	53, 65, 142, 215, 597
Hpy8I	GTNNAC	2 cut(s)	435, 563
HpyAV	CCTTC	2 cut(s)	166, 310
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4V	TGCA	4 cut(s)	242, 308, 369, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 481
Hsp92II	CATG	4 cut(s)	127, 145, 373, 386
Ksp22I	TGATCA	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	81, 92
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	2 cut(s)	366, 440
LpnPI	CCDG	8 cut(s)	38, 57, 78, 171, 228, 306, 423, 506
LweI	GCATC	3 cut(s)	208, 220, 310
MaeIII	GTNAC	2 cut(s)	190, 508
MalI	GATC	2 cut(s)	83, 94
MboI	GATC	2 cut(s)	81, 92
MboII	GAAGA	2 cut(s)	344, 574
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	3 cut(s)	263, 281, 396
MlyI	GAGTC	1 cut(s)	533
MnlI	CCTC	4 cut(s)	122, 156, 192, 446
Mph1103I	ATGCAT	1 cut(s)	371
MseI	TTAA	3 cut(s)	206, 237, 545
MslI	CAYNNNNRTG	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	551
MwoI	GCNNNNNNNGC	2 cut(s)	182, 481
NdeII	GATC	2 cut(s)	81, 92
NlaIII	CATG	4 cut(s)	127, 145, 373, 386
NsiI	ATGCAT	1 cut(s)	371
NspI	RCATGY	1 cut(s)	127
NspV	TTCGAA	1 cut(s)	400
PagI	TCATGA	1 cut(s)	141
PciSI	GCTCTTC	1 cut(s)	327
PfeI	GAWTC	2 cut(s)	248, 534
PflMI	CCANNNNNTGG	1 cut(s)	370
PkrI	GCNGC	1 cut(s)	553
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
Psp124BI	GAGCTC	1 cut(s)	445
PstI	CTGCAG	1 cut(s)	517
RseI	CAYNNNNRTG	1 cut(s)	216
SacI	GAGCTC	1 cut(s)	445
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	3 cut(s)	206, 237, 545
SatI	GCNGC	1 cut(s)	552
Sau3AI	GATC	2 cut(s)	81, 92
SchI	GAGTC	1 cut(s)	533
SduI	GDGCHC	1 cut(s)	445
SetI	ASST	7 cut(s)	41, 339, 358, 445, 457, 482, 571
SfaNI	GCATC	3 cut(s)	208, 220, 310
SfcI	CTRYAG	1 cut(s)	513
SfuI	TTCGAA	1 cut(s)	400
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	3 cut(s)	263, 281, 396
SsiI	CCGC	1 cut(s)	551
SstI	GAGCTC	1 cut(s)	445
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	1 cut(s)	496
TaqI	TCGA	3 cut(s)	119, 393, 400
TasI	AATT	3 cut(s)	263, 281, 396
TauI	GCSGC	1 cut(s)	554
TfiI	GAWTC	2 cut(s)	248, 534
Tru1I	TTAA	3 cut(s)	206, 237, 545
Tru9I	TTAA	3 cut(s)	206, 237, 545
TspDTI	ATGAA	3 cut(s)	312, 362, 582
Van91I	CCANNNNNTGG	1 cut(s)	370
XagI	CCTNNNNNAGG	1 cut(s)	69
XapI	RAATTY	1 cut(s)	396
XceI	RCATGY	1 cut(s)	127
Zsp2I	ATGCAT	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.