Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013686.1

Orthogroup ID

OG0016998

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 500

Gene Structure 500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013686.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 274 bp

atgctatggcttctgtgtttaatgcatgcagttgattctatcagcgtggaattggctaccatcatccaattagaggcccctgatgaaatctctgtaaccgagaaggatgcgaaaatagaagagctgatggaaatgaaccaaggtttgctccaatgcatggggttcagccatgcttcaatccaaaccattcttcgaactacactcaaatacaagttggctttcaagttgacaggagctcctggtggaggttctgttatcacactattgccaacct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

91

Amino Acids

9.93

Weight (kDa)

4.92

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016998)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0454481 RchiOBHm_Chr7g0220941
rosa_laevigata	RLG00000002187
rosa_multiflora	Rmu_sc0007209.1_g000007 Rmu_sc0013686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238860
rosa_rugosa	Rorug02G0654700
rosa_samantha	Rh3AG058900 Rh3BG060800 Rh3CG059700 Rh3DG060900 Rh7AG338700 Rh7BG340300 Rh7CG356800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	157
AfiI	CCNNNNNNNGG	3 cut(s)	73, 157, 245
AgsI	TTSAA	2 cut(s)	177, 223
AjnI	CCWGG	1 cut(s)	238
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	2 cut(s)	124, 236
AluI	AGCT	2 cut(s)	124, 236
Alw21I	GWGCWC	1 cut(s)	238
AoxI	GGCC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	76
AsuII	TTCGAA	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	238
BccI	CCATC	2 cut(s)	68, 121
BcgI	CGANNNNNNTGC	2 cut(s)	89, 123
BciT130I	CCWGG	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	240
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	97
Bpu14I	TTCGAA	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	139
BsaXI	ACNNNNNCTCC	4 cut(s)	220, 237, 250, 267
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 157, 245
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	2 cut(s)	63, 112
BseLI	CCNNNNNNNGG	3 cut(s)	73, 157, 245
BshFI	GGCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	238
BslI	CCNNNNNNNGG	3 cut(s)	73, 157, 245
BsnI	GGCC	1 cut(s)	77
Bsp119I	TTCGAA	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	238
BspANI	GGCC	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	78
BspQI	GCTCTTC	1 cut(s)	114
BspT104I	TTCGAA	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	240
Bst6I	CTCTTC	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	27
BstENI	CCTNNNNNAGG	1 cut(s)	243
BstF5I	GGATG	2 cut(s)	63, 112
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	63, 112
Cac8I	GCNNGC	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	76
CviAII	CATG	3 cut(s)	26, 157, 170
CviJI	RGCY	7 cut(s)	10, 56, 77, 124, 168, 218, 236
CviKI_1	RGCY	7 cut(s)	10, 56, 77, 124, 168, 218, 236
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	238
Eco53kI	GAGCTC	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	236
EcoNI	CCTNNNNNAGG	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	139
EcoT22I	ATGCAT	2 cut(s)	27, 158
EcoT38I	GRGCYC	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	3 cut(s)	29, 160, 173
FaiI	YATR	4 cut(s)	7, 27, 158, 171
FatI	CATG	3 cut(s)	25, 156, 169
FokI	GGATG	2 cut(s)	50, 119
FriOI	GRGCYC	1 cut(s)	238
HaeIII	GGCC	1 cut(s)	77
Hin1II	CATG	3 cut(s)	29, 160, 173
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HinfI	GANTC	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	228
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	1 cut(s)	97
HpyCH4V	TGCA	3 cut(s)	25, 29, 156
Hsp92II	CATG	3 cut(s)	29, 160, 173
LguI	GCTCTTC	1 cut(s)	114
LmnI	GCTCC	3 cut(s)	153, 233, 241
LpnPI	CCDG	4 cut(s)	93, 216, 225, 252
LweI	GCATC	1 cut(s)	97
MaeIII	GTNAC	1 cut(s)	94
MboII	GAAGA	2 cut(s)	131, 182
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	2 cut(s)	50, 68
MnlI	CCTC	2 cut(s)	67, 239
Mph1103I	ATGCAT	2 cut(s)	27, 158
MseI	TTAA	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
NlaIII	CATG	3 cut(s)	29, 160, 173
NlaIV	GGNNCC	1 cut(s)	78
NsiI	ATGCAT	2 cut(s)	27, 158
NspI	RCATGY	1 cut(s)	29
NspV	TTCGAA	1 cut(s)	193
PaeI	GCATGC	1 cut(s)	29
PciSI	GCTCTTC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	35
PflMI	CCANNNNNTGG	1 cut(s)	157
Psp124BI	GAGCTC	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	76
SacI	GAGCTC	1 cut(s)	238
SapI	GCTCTTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	20
Sau96I	GGNCC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	4 cut(s)	126, 145, 238, 250
SfaNI	GCATC	1 cut(s)	97
SfuI	TTCGAA	1 cut(s)	193
SphI	GCATGC	1 cut(s)	29
Sse9I	AATT	2 cut(s)	50, 68
SstI	GAGCTC	1 cut(s)	238
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	139
TaqI	TCGA	1 cut(s)	193
TasI	AATT	2 cut(s)	50, 68
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TspDTI	ATGAA	2 cut(s)	99, 149
Van91I	CCANNNNNTGG	1 cut(s)	157
XagI	CCTNNNNNAGG	1 cut(s)	243
XceI	RCATGY	1 cut(s)	29
Zsp2I	ATGCAT	2 cut(s)	27, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.