Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007356.1

Orthogroup ID

OG0009922

Physical Location & Seq

Genomic Coordinates Reverse (-)

28108 .. 31540

Gene Structure 3433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ctggaatccggtcaccggtcgtcggaatccggtcaccgttcgccggagtccggtcaccggtcgccggaatccggtcaccgttcaccggagtccggtcaccggtcacaggagtctggtcgccggagaccgcgccggccactggtcaccgtagcacagcaaggtggaagaatttactcgggctcttgtgaaagatctcagcgacggacggtcaccggagattctcatccatcgcttccgaaattactgctccaatccctccgcaaattggcttaccctgttccagttcatgttgaagaggtcaaagatattgttagtgttgcccagtacatacttgttgtggagaaagaatcagtttttcaacgattgggaaatgaccagttttgtaacacaaaccactgcattgtcatcactggacgtggatatcctgatatttccacaagaaggtttttggggctccttgttgatactttacatatccctgtctattgcttggtagattgtgatccctacggttttgacatcttgtccacatatcggtttggttctctggttaggccttctgatcaatctatgaacttgttctctaagttaacaaagttaaggtgcatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000724 GO:0000725 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

203

Amino Acids

22.85

Weight (kDa)

9.41

Isoelectric Point (pI)

77.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	109 - 184	1.1e-32	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13170 AT3G13170 AT3G13170
fragaria_vesca	FvH4_3g29420
malus_domestica	MD03G1184400.v1.1 MD03G1184700.v1.1
prunus_persica	Prupe.4G241800_v2.0.a1 Prupe.4G241800_v2.0.a1
pyrus_communis	pycom03g13780
rosa_chinensis	RchiOBHm_Chr5g0053841
rosa_laevigata	RLG00000034906
rosa_multiflora	Rmu_sc0007356.1_g000010
rosa_roxburghii	Rroxscaffold_1G00026760
rosa_rugosa	Rorug05G0283600 Rorug05G0283700
rosa_samantha	Rh5AG353400 Rh5BG365000 Rh5CG390100 Rh5DG380000
rosa_wichuraiana	Rw0G002140 Rw0G009550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	130
AciI	CCGC	2 cut(s)	128, 259
AclWI	GGATC	1 cut(s)	497
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	168
AfaI	GTAC	1 cut(s)	326
AgeI	ACCGGT	3 cut(s)	15, 57, 99
AgsI	TTSAA	2 cut(s)	293, 359
AhdI	GACNNNNNGTC	2 cut(s)	206, 523
AjiI	CACGTC	1 cut(s)	416
Alw26I	GTCTC	1 cut(s)	118
AlwI	GGATC	1 cut(s)	497
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	2 cut(s)	134, 554
ApoI	RAATTY	1 cut(s)	168
AsiGI	ACCGGT	3 cut(s)	15, 57, 99
Asp700I	GAANNNNTTC	1 cut(s)	578
AspLEI	GCGC	1 cut(s)	132
AsuHPI	GGTGA	8 cut(s)	5, 26, 47, 68, 75, 89, 136, 202
AvaI	CYCGRG	1 cut(s)	175
BanII	GRGCYC	2 cut(s)	182, 456
BccI	CCATC	1 cut(s)	235
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BclI	TGATCA	1 cut(s)	562
BcoDI	GTCTC	1 cut(s)	118
BglII	AGATCT	1 cut(s)	191
BmeRI	GACNNNNNGTC	2 cut(s)	206, 523
BmeT110I	CYCGRG	1 cut(s)	175
BmgBI	CACGTC	1 cut(s)	416
BmiI	GGNNCC	1 cut(s)	455
BmrI	ACTGGG	1 cut(s)	316
BmuI	ACTGGG	1 cut(s)	316
BsaBI	GATNNNNATC	2 cut(s)	222, 501
BsaI	GGTCTC	1 cut(s)	118
Bse118I	RCCGGY	4 cut(s)	15, 57, 99, 132
Bse1I	ACTGG	5 cut(s)	144, 281, 322, 376, 415
Bse8I	GATNNNNATC	2 cut(s)	222, 501
BseGI	GGATG	1 cut(s)	223
BseJI	GATNNNNATC	2 cut(s)	222, 501
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	5 cut(s)	144, 281, 322, 376, 415
Bsh1236I	CGCG	1 cut(s)	130
Bsh1285I	CGRYCG	2 cut(s)	20, 62
BshFI	GGCC	2 cut(s)	136, 556
BshTI	ACCGGT	3 cut(s)	15, 57, 99
BsiEI	CGRYCG	2 cut(s)	20, 62
BsiHKCI	CYCGRG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	118
BsnI	GGCC	2 cut(s)	136, 556
Bso31I	GGTCTC	1 cut(s)	118
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	182, 456
Bsp143I	GATC	3 cut(s)	191, 502, 562
BspACI	CCGC	2 cut(s)	128, 259
BspANI	GGCC	2 cut(s)	136, 556
BspCNI	CTCAG	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	455
BspPI	GGATC	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	118
BsrFI	RCCGGY	4 cut(s)	15, 57, 99, 132
BsrI	ACTGG	5 cut(s)	144, 281, 322, 376, 415
BssAI	RCCGGY	4 cut(s)	15, 57, 99, 132
BssMI	GATC	3 cut(s)	191, 502, 562
Bst4CI	ACNGT	5 cut(s)	38, 80, 148, 208, 512
Bst6I	CTCTTC	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	2 cut(s)	195, 585
BstEII	GGTNACC	7 cut(s)	11, 32, 53, 74, 95, 142, 208
BstF5I	GGATG	1 cut(s)	223
BstFNI	CGCG	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	3 cut(s)	194, 505, 565
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	3 cut(s)	191, 502, 562
BstMCI	CGRYCG	2 cut(s)	20, 62
BstNSI	RCATGY	1 cut(s)	610
BstPI	GGTNACC	7 cut(s)	11, 32, 53, 74, 95, 142, 208
BstUI	CGCG	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	136, 556
BtgZI	GCGATG	1 cut(s)	213
BtrI	CACGTC	1 cut(s)	416
BtsCI	GGATG	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	3 cut(s)	137, 394, 408
Cac8I	GCNNGC	1 cut(s)	134
CfoI	GCGC	1 cut(s)	132
Cfr10I	RCCGGY	4 cut(s)	15, 57, 99, 132
Csp6I	GTAC	1 cut(s)	325
CspAI	ACCGGT	3 cut(s)	15, 57, 99
CviAII	CATG	2 cut(s)	287, 607
CviJI	RGCY	5 cut(s)	136, 180, 269, 454, 556
CviKI_1	RGCY	5 cut(s)	136, 180, 269, 454, 556
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	2 cut(s)	195, 585
DpnI	GATC	3 cut(s)	193, 504, 564
DpnII	GATC	3 cut(s)	191, 502, 562
DriI	GACNNNNNGTC	2 cut(s)	206, 523
EaeI	YGGCCR	1 cut(s)	134
Eam1104I	CTCTTC	1 cut(s)	288
Eam1105I	GACNNNNNGTC	2 cut(s)	206, 523
EarI	CTCTTC	1 cut(s)	288
Eco147I	AGGCCT	1 cut(s)	556
Eco24I	GRGCYC	2 cut(s)	182, 456
Eco31I	GGTCTC	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	422
Eco88I	CYCGRG	1 cut(s)	175
Eco91I	GGTNACC	7 cut(s)	11, 32, 53, 74, 95, 142, 208
EcoO65I	GGTNACC	7 cut(s)	11, 32, 53, 74, 95, 142, 208
EcoRV	GATATC	1 cut(s)	422
EcoT38I	GRGCYC	2 cut(s)	182, 456
FaeI	CATG	2 cut(s)	290, 610
FaiI	YATR	6 cut(s)	288, 329, 474, 532, 572, 608
FatI	CATG	2 cut(s)	286, 606
FbaI	TGATCA	1 cut(s)	562
FokI	GGATG	1 cut(s)	210
FriOI	GRGCYC	2 cut(s)	182, 456
GlaI	GCGC	1 cut(s)	131
HaeIII	GGCC	2 cut(s)	136, 556
HhaI	GCGC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	290, 610
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	591
HindII	GTYRAC	1 cut(s)	591
HinfI	GANTC	8 cut(s)	5, 26, 47, 68, 89, 110, 218, 347
HpaI	GTTAAC	1 cut(s)	591
HphI	GGTGA	8 cut(s)	5, 26, 47, 68, 75, 89, 136, 202
Hpy166II	GTNNAC	3 cut(s)	83, 528, 591
Hpy188I	TCNGA	3 cut(s)	25, 237, 562
Hpy188III	TCNNGA	1 cut(s)	425
Hpy8I	GTNNAC	3 cut(s)	83, 528, 591
Hpy99I	CGWCG	2 cut(s)	25, 204
HpyAV	CCTTC	2 cut(s)	435, 567
HpyCH4III	ACNGT	5 cut(s)	38, 80, 148, 208, 512
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	2 cut(s)	399, 606
HpyF3I	CTNAG	2 cut(s)	195, 585
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	2 cut(s)	290, 610
HspAI	GCGC	1 cut(s)	130
KroI	GCCGGC	1 cut(s)	132
KroNI	GCCGGC	1 cut(s)	134
Ksp22I	TGATCA	1 cut(s)	562
KspAI	GTTAAC	1 cut(s)	591
Kzo9I	GATC	3 cut(s)	191, 502, 562
LmnI	GCTCC	2 cut(s)	252, 459
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	9 cut(s)	11, 32, 53, 74, 95, 102, 142, 208, 383
MalI	GATC	3 cut(s)	193, 504, 564
MboI	GATC	3 cut(s)	191, 502, 562
MboII	GAAGA	2 cut(s)	177, 305
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	2 cut(s)	182, 456
MluCI	AATT	3 cut(s)	168, 239, 263
MlyI	GAGTC	3 cut(s)	56, 98, 119
MnlI	CCTC	2 cut(s)	266, 289
MroNI	GCCGGC	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	578
MseI	TTAA	2 cut(s)	590, 599
MvnI	CGCG	1 cut(s)	130
NaeI	GCCGGC	1 cut(s)	134
NdeII	GATC	3 cut(s)	191, 502, 562
NgoMIV	GCCGGC	1 cut(s)	132
NlaIII	CATG	2 cut(s)	290, 610
NlaIV	GGNNCC	1 cut(s)	455
NmuCI	GTSAC	8 cut(s)	11, 32, 53, 74, 95, 102, 142, 208
NspI	RCATGY	1 cut(s)	610
PceI	AGGCCT	1 cut(s)	556
PdiI	GCCGGC	1 cut(s)	134
PdmI	GAANNNNTTC	1 cut(s)	578
PfeI	GAWTC	5 cut(s)	5, 26, 68, 218, 347
PinAI	ACCGGT	3 cut(s)	15, 57, 99
PleI	GAGTC	3 cut(s)	55, 97, 118
PpsI	GAGTC	3 cut(s)	55, 97, 118
PspEI	GGTNACC	7 cut(s)	11, 32, 53, 74, 95, 142, 208
PspN4I	GGNNCC	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	191
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SaqAI	TTAA	2 cut(s)	590, 599
Sau3AI	GATC	3 cut(s)	191, 502, 562
SchI	GAGTC	3 cut(s)	56, 98, 119
SduI	GDGCHC	2 cut(s)	182, 456
SetI	ASST	5 cut(s)	163, 300, 418, 446, 605
Sse9I	AATT	3 cut(s)	168, 239, 263
SseBI	AGGCCT	1 cut(s)	556
SsiI	CCGC	2 cut(s)	128, 259
StuI	AGGCCT	1 cut(s)	556
TaaI	ACNGT	5 cut(s)	38, 80, 148, 208, 512
TaiI	ACGT	1 cut(s)	418
TasI	AATT	3 cut(s)	168, 239, 263
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	5 cut(s)	5, 26, 68, 218, 347
Tru1I	TTAA	2 cut(s)	590, 599
Tru9I	TTAA	2 cut(s)	590, 599
TscAI	CASTG	3 cut(s)	144, 401, 415
TseFI	GTSAC	8 cut(s)	11, 32, 53, 74, 95, 102, 142, 208
Tsp45I	GTSAC	8 cut(s)	11, 32, 53, 74, 95, 102, 142, 208
TspDTI	ATGAA	2 cut(s)	275, 587
TspGWI	ACGGA	1 cut(s)	217
TspRI	CASTG	3 cut(s)	144, 401, 415
XapI	RAATTY	1 cut(s)	168
XceI	RCATGY	1 cut(s)	610
XmnI	GAANNNNTTC	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.