Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007472.1

Orthogroup ID

OG0018047

Physical Location & Seq

Genomic Coordinates Reverse (-)

12676 .. 15119

Gene Structure 2444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgtatagaaagttagataaaagattggatcatcatctggagggttggcagagcaaatttctctctaaagctgggaagctgatattagtgaaagcagtggctcaggcaatcccaacttatacgatgagtgtttttaaattgccaaaaggggtacagcgaaggtttcaatctaagataactaggttctggtggggtaagggtggtgataagaaagggatgcattggtgcaagtgggagaaattgtgtggcagtaaatgggatggtggtttgggatttagagatttggagattttcaataaagctctgctagccaaaacgttttggcagctaatgctttctctgcattctctcgacagcaggttaactagagttaagtactttccagatgcagattggttggatgcctggtactgttttcagagaactgattctttgcaagaacattccttgcctcattggacgaagccagtatgcattggaaaacatgctttcggtgatctatatcgagcaactgatacagttataaaaggacctgggaaattgaaattgttgtttgttccagaaggaaaggacgagatgaccgaactggaattacacaactttacaattgccatgtacaacaccgatgggtcaatctgtgcttttgtagaagctcctatgaacacagcttatgagaaaaaggtggccacttataatagcacaaaaaacactattcttaatgagtatgatggaaggttcaaggacatatttcaagaagtttatgaagcccattggaaatcgaagtatgaagctgctggcatatggtatgaacatcacctcattgatgatatggtggcttacgcattcaaaagtgaaggtggttatgtttgggcatccaagaattatgatggcgatgtgcaaagtgatttcttagctcaagaagctggaagaagcttgtattctgggaaaatgaccaaggatcttgcactagttcttaacggacctaaccttgctaggaaccactacttgaacacggaagagttcattgatgccgtggcagcagaactgaacgcaaagctttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004450 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006102 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009117 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019752 GO:0030054 GO:0034641 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072350 GO:0072524 GO:0098542 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

354

Amino Acids

40.79

Weight (kDa)

8.69

Isoelectric Point (pI)

26.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	151 - 309	2.4e-21	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018047)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25921
rosa_chinensis	RchiOBHm_Chr1g0316931 RchiOBHm_Chr3g0476451
rosa_multiflora	Rmu_sc0004138.1_g000004 Rmu_sc0007472.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330770
rosa_samantha	Rh1CG023000 Rh3CG227600
rosa_wichuraiana	Rw1G001690 Rw1G001700 Rw3G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	524, 693
Acc36I	ACCTGC	1 cut(s)	348
AclI	AACGTT	1 cut(s)	317
AclWI	GGATC	2 cut(s)	36, 966
AcoI	YGGCCR	1 cut(s)	684
AcsI	RAATTY	1 cut(s)	56
AfaI	GTAC	4 cut(s)	153, 377, 410, 617
AgsI	TTSAA	7 cut(s)	167, 295, 544, 739, 752, 847, 1009
AhlI	ACTAGT	1 cut(s)	967
AjnI	CCWGG	2 cut(s)	404, 532
AlwI	GGATC	2 cut(s)	36, 966
AoxI	GGCC	1 cut(s)	684
ApeKI	GCWGC	3 cut(s)	325, 791, 1037
ApoI	RAATTY	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	427
AspS9I	GGNCC	2 cut(s)	530, 980
AsuHPI	GGTGA	3 cut(s)	215, 506, 806
AsuNHI	GCTAGC	1 cut(s)	307
AvaII	GGWCC	2 cut(s)	530, 980
BalI	TGGCCA	1 cut(s)	686
BbvI	GCAGC	3 cut(s)	337, 778, 1049
BccI	CCATC	4 cut(s)	254, 620, 722, 881
BceAI	ACGGC	1 cut(s)	1016
BciT130I	CCWGG	2 cut(s)	406, 534
BcuI	ACTAGT	1 cut(s)	967
BfaI	CTAG	5 cut(s)	180, 308, 366, 968, 993
BfuAI	ACCTGC	1 cut(s)	348
BisI	GCNGC	3 cut(s)	326, 792, 1038
BlsI	GCNGC	3 cut(s)	327, 793, 1039
BmcAI	AGTACT	1 cut(s)	377
Bme1390I	CCNGG	2 cut(s)	406, 534
Bme18I	GGWCC	2 cut(s)	530, 980
BmgT120I	GGNCC	2 cut(s)	530, 980
BmiI	GGNNCC	1 cut(s)	998
BmrFI	CCNGG	2 cut(s)	406, 534
BmsI	GCATC	5 cut(s)	207, 376, 391, 881, 1018
BmtI	GCTAGC	1 cut(s)	311
BpmI	CTGGAG	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	900
BsaBI	GATNNNNATC	2 cut(s)	33, 501
BsaJI	CCNNGG	3 cut(s)	533, 954, 1032
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bse1I	ACTGG	2 cut(s)	467, 591
Bse8I	GATNNNNATC	2 cut(s)	33, 501
BseBI	CCWGG	2 cut(s)	406, 534
BseDI	CCNNGG	3 cut(s)	533, 954, 1032
BseGI	GGATG	4 cut(s)	222, 265, 406, 872
BseJI	GATNNNNATC	2 cut(s)	33, 501
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	2 cut(s)	467, 591
BseXI	GCAGC	3 cut(s)	337, 778, 1049
BseYI	CCCAGC	1 cut(s)	71
BshFI	GGCC	1 cut(s)	686
BsmI	GAATGC	2 cut(s)	343, 842
BsnI	GGCC	1 cut(s)	686
Bsp1407I	TGTACA	1 cut(s)	615
Bsp143I	GATC	3 cut(s)	28, 496, 958
BspANI	GGCC	1 cut(s)	686
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	998
BspMI	ACCTGC	1 cut(s)	348
BspOI	GCTAGC	1 cut(s)	311
BspPI	GGATC	2 cut(s)	36, 966
BsrGI	TGTACA	1 cut(s)	615
BsrI	ACTGG	2 cut(s)	467, 591
BssECI	CCNNGG	3 cut(s)	533, 954, 1032
BssMI	GATC	3 cut(s)	28, 496, 958
BssT1I	CCWWGG	1 cut(s)	954
Bst2UI	CCWGG	2 cut(s)	406, 534
Bst4CI	ACNGT	2 cut(s)	413, 520
Bst6I	CTCTTC	1 cut(s)	1011
BstAPI	GCANNNNNTGC	1 cut(s)	331
BstAUI	TGTACA	1 cut(s)	615
BstC8I	GCNNGC	2 cut(s)	309, 796
BstDEI	CTNAG	3 cut(s)	102, 171, 910
BstDSI	CCRYGG	1 cut(s)	1032
BstF5I	GGATG	4 cut(s)	222, 265, 406, 872
BstKTI	GATC	3 cut(s)	31, 499, 961
BstMBI	GATC	3 cut(s)	28, 496, 958
BstMWI	GCNNNNNNNGC	5 cut(s)	308, 331, 340, 920, 1037
BstNI	CCWGG	2 cut(s)	406, 534
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	2 cut(s)	404, 532
BstV1I	GCAGC	3 cut(s)	337, 778, 1049
BstX2I	RGATCY	1 cut(s)	958
BstYI	RGATCY	1 cut(s)	958
BsuRI	GGCC	1 cut(s)	686
BtgI	CCRYGG	1 cut(s)	1032
BtgZI	GCGATG	1 cut(s)	906
BtsCI	GGATG	4 cut(s)	222, 265, 406, 872
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
BveI	ACCTGC	1 cut(s)	348
Cac8I	GCNNGC	2 cut(s)	309, 796
Cfr13I	GGNCC	2 cut(s)	530, 980
Csp6I	GTAC	4 cut(s)	152, 376, 409, 616
CviAII	CATG	2 cut(s)	485, 613
CviQI	GTAC	4 cut(s)	152, 376, 409, 616
DdeI	CTNAG	3 cut(s)	102, 171, 910
DpnI	GATC	3 cut(s)	30, 498, 960
DpnII	GATC	3 cut(s)	28, 496, 958
DraI	TTTAAA	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	684
Eam1104I	CTCTTC	1 cut(s)	1011
EarI	CTCTTC	1 cut(s)	1011
Eco130I	CCWWGG	1 cut(s)	954
Eco47I	GGWCC	2 cut(s)	530, 980
EcoO109I	RGGNCCY	1 cut(s)	530
EcoRII	CCWGG	2 cut(s)	404, 532
EcoT14I	CCWWGG	1 cut(s)	954
EcoT22I	ATGCAT	2 cut(s)	222, 476
ErhI	CCWWGG	1 cut(s)	954
FaeI	CATG	2 cut(s)	488, 616
FatI	CATG	2 cut(s)	484, 612
FauNDI	CATATG	1 cut(s)	800
Fnu4HI	GCNGC	3 cut(s)	326, 792, 1038
FokI	GGATG	4 cut(s)	229, 272, 413, 859
Fsp4HI	GCNGC	3 cut(s)	326, 792, 1038
FspBI	CTAG	5 cut(s)	180, 308, 366, 968, 993
GluI	GCNGC	3 cut(s)	326, 792, 1038
GsaI	CCCAGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	686
Hin1II	CATG	2 cut(s)	488, 616
HincII	GTYRAC	1 cut(s)	363
HindII	GTYRAC	1 cut(s)	363
HindIII	AAGCTT	2 cut(s)	931, 1055
HinfI	GANTC	1 cut(s)	428
HpaI	GTTAAC	1 cut(s)	363
HphI	GGTGA	3 cut(s)	215, 506, 806
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	1 cut(s)	420
Hpy188III	TCNNGA	7 cut(s)	38, 350, 383, 560, 752, 917, 1062
Hpy8I	GTNNAC	1 cut(s)	363
HpyAV	CCTTC	4 cut(s)	153, 557, 726, 848
HpyCH4III	ACNGT	2 cut(s)	413, 520
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	8 cut(s)	220, 228, 343, 389, 436, 474, 898, 965
HpyF10VI	GCNNNNNNNGC	5 cut(s)	308, 331, 340, 920, 1037
HpyF3I	CTNAG	3 cut(s)	102, 171, 910
HpySE526I	ACGT	1 cut(s)	317
Hsp92II	CATG	2 cut(s)	488, 616
KspAI	GTTAAC	1 cut(s)	363
Kzo9I	GATC	3 cut(s)	28, 496, 958
LmnI	GCTCC	1 cut(s)	658
Lsp1109I	GCAGC	3 cut(s)	337, 778, 1049
LweI	GCATC	5 cut(s)	207, 376, 391, 881, 1018
MaeI	CTAG	5 cut(s)	180, 308, 366, 968, 993
MaeII	ACGT	1 cut(s)	317
MalI	GATC	3 cut(s)	30, 498, 960
MboI	GATC	3 cut(s)	28, 496, 958
MboII	GAAGA	2 cut(s)	939, 1028
MfeI	CAATTG	1 cut(s)	606
MflI	RGATCY	1 cut(s)	958
MlsI	TGGCCA	1 cut(s)	686
MluCI	AATT	8 cut(s)	56, 137, 239, 539, 545, 590, 606, 880
MluNI	TGGCCA	1 cut(s)	686
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	3 cut(s)	34, 462, 827
Mox20I	TGGCCA	1 cut(s)	686
Mph1103I	ATGCAT	2 cut(s)	222, 476
MroXI	GAANNNNTTC	1 cut(s)	427
MscI	TGGCCA	1 cut(s)	686
MseI	TTAA	5 cut(s)	135, 362, 372, 717, 975
Msp20I	TGGCCA	1 cut(s)	686
MspR9I	CCNGG	2 cut(s)	406, 534
MunI	CAATTG	1 cut(s)	606
Mva1269I	GAATGC	2 cut(s)	343, 842
MvaI	CCWGG	2 cut(s)	406, 534
MwoI	GCNNNNNNNGC	5 cut(s)	308, 331, 340, 920, 1037
NdeI	CATATG	1 cut(s)	800
NdeII	GATC	3 cut(s)	28, 496, 958
NheI	GCTAGC	1 cut(s)	307
NlaIII	CATG	2 cut(s)	488, 616
NlaIV	GGNNCC	1 cut(s)	998
NsiI	ATGCAT	2 cut(s)	222, 476
NspI	RCATGY	1 cut(s)	488
PcsI	WCGNNNNNNNCGW	1 cut(s)	579
PctI	GAATGC	2 cut(s)	343, 842
PdmI	GAANNNNTTC	1 cut(s)	427
PfeI	GAWTC	1 cut(s)	428
PkrI	GCNGC	3 cut(s)	327, 793, 1039
PpuMI	RGGWCCY	1 cut(s)	530
PsiI	TTATAA	2 cut(s)	524, 693
Psp1406I	AACGTT	1 cut(s)	317
Psp5II	RGGWCCY	1 cut(s)	530
Psp6I	CCWGG	2 cut(s)	404, 532
PspFI	CCCAGC	1 cut(s)	71
PspGI	CCWGG	2 cut(s)	404, 532
PspN4I	GGNNCC	1 cut(s)	998
PspPI	GGNCC	2 cut(s)	530, 980
PspPPI	RGGWCCY	1 cut(s)	530
PsrI	GAACNNNNNNTAC	2 cut(s)	576, 608
PsuI	RGATCY	1 cut(s)	958
RsaI	GTAC	4 cut(s)	153, 377, 410, 617
RsaNI	GTAC	4 cut(s)	152, 376, 409, 616
SaqAI	TTAA	5 cut(s)	135, 362, 372, 717, 975
SatI	GCNGC	3 cut(s)	326, 792, 1038
Sau3AI	GATC	3 cut(s)	28, 496, 958
Sau96I	GGNCC	2 cut(s)	530, 980
ScaI	AGTACT	1 cut(s)	377
ScrFI	CCNGG	2 cut(s)	406, 534
SfaNI	GCATC	5 cut(s)	207, 376, 391, 881, 1018
SinI	GGWCC	2 cut(s)	530, 980
SmlI	CTYRAG	1 cut(s)	915
SmoI	CTYRAG	1 cut(s)	915
SpeI	ACTAGT	1 cut(s)	967
Sse9I	AATT	8 cut(s)	56, 137, 239, 539, 545, 590, 606, 880
SspMI	CTAG	5 cut(s)	180, 308, 366, 968, 993
StyD4I	CCNGG	2 cut(s)	404, 532
StyI	CCWWGG	1 cut(s)	954
TaaI	ACNGT	2 cut(s)	413, 520
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	3 cut(s)	351, 505, 779
TaqII	GACCGA	1 cut(s)	596
TasI	AATT	8 cut(s)	56, 137, 239, 539, 545, 590, 606, 880
TatI	WGTACW	2 cut(s)	375, 615
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	5 cut(s)	135, 362, 372, 717, 975
Tru9I	TTAA	5 cut(s)	135, 362, 372, 717, 975
TscAI	CASTG	1 cut(s)	102
TseI	GCWGC	3 cut(s)	325, 791, 1037
TspDTI	ATGAA	5 cut(s)	674, 777, 801, 822, 1012
TspGWI	ACGGA	2 cut(s)	993, 1028
TspRI	CASTG	1 cut(s)	102
VpaK11BI	GGWCC	2 cut(s)	530, 980
XapI	RAATTY	1 cut(s)	56
XceI	RCATGY	1 cut(s)	488
XcmI	CCANNNNNNNNNTGG	1 cut(s)	390
XmnI	GAANNNNTTC	1 cut(s)	427
XspI	CTAG	5 cut(s)	180, 308, 366, 968, 993
ZrmI	AGTACT	1 cut(s)	377
Zsp2I	ATGCAT	2 cut(s)	222, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.