Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007548.1

Orthogroup ID

OG0010176

Physical Location & Seq

Genomic Coordinates Forward (+)

34715 .. 38764

Gene Structure 4050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2100 bp

atgttccggttgcctaatgcatcggacagctttcccatgagtagaaatatgccagggaaggacccttctgtgaggacattggatgacaggttcacaaagattttgaaaattttcaagtgggggcctgatgccgaaaaagccttggaagtgctgaagctgagagtggatcataggttggttctcgcggttctcaagattgacgtcgaggccattgttaaggttaagtttttcaagtgggctgggaagagaaggaatttccaacacaattcaaccacatatatggcgttgatccgttgcttggacgaggctggtatggttggtgaaatgtggaaagccattcaggagatggttcgaagtgcacgcgttatcgatccagctgaattgtctgagattataagaatcttgggaagggctaagatggtaaacaaggcactatctgtcttctaccaaatcaaaggccacaactgcacgccaacagctcatagttacaactccatgatcttaatgctgatgcaagaaggtcatcatgaaaaggtccaggagctctataatgagatgtgtaatgagagtaactgtttcccggacacagtcacatacagtgcactaatatctgcatttgggaaattgggtcgtgatgattctgcaattaggttgtttgatgagatgaaggataacggtttacatccaactgcaaagatttatactaccctattggcaatctttttcaagttgggcaaggttgagaaagctttaagtctagttcaggagatgaaagagaatgggtgtccgcctactgtttttacttacactgaattgataaaggggctagggaaagctgggagggttgaagatgcttatgtcatgtacaaaaacatgctgaaggagggttgtaagcctgatgttgtgctcatgaacaatttgataaacattttgggaaaggaaggtcgcatagaaaatgctattaatcttttcaatgagatggacattttgcgttgcacacctaatgtggtgacttataacacgataattaaagctttatttgattccaaagctccagcttcggttgcagcttcatggtttgagaagatgaaagtgaatggtgttattccgagctcttttacctattcgattctgatagatggtttttgcaaaacaaatagagttgagaaagctttgttgcttcttgaagagatggatgaaaaagggttccccccttgtccagctgcgtattgcagcctgatcaacagtcttggaaaagcaaagcggtatgaagctgcaaatgagttatttcaagaattgaaagaaaactgtggacgtgcaagtgctagagtatatgccgtgatgattaaacatttcggaaaatgtgggcgtcttgatgaagctctggatctttttcacgagatgaagaaacttggatgcaatccggatgtatatacttataatgccctcatgtcagggatggtcagggctggtatgatagatgaggcactttccttgcttaaaaccatggaagaaaggggctgtgttgcagacataaactcacaaaacatcattttaaatggcttggctagggcaggtggcccaaagagggctttagaaatgttttcaaagatgaagcattccaagattcaaccagatgcagtttcttataacactattcttggttgtctcagtcgagctggcttgcttgaagaggctgcaaagctgatgaaagagatgacttcaaaaggttttcaatatgatctcatcacctactcatcaatacttgaggcagttggcaaggttgatgaagctcatatgacttccttaaggggatctgagcctcagttccacagtccaactctagaggcactgctgatggatcaagatgttgatagagttcttgaaaaaggtgcccaggagaactatgagtgcaagtgggtgcgtcgccagggggtggtgctttgcaatgtgcaattcttagtcgaaccttcaaagtccaagagtttcagctttcagaagaggaggaagttgaggttcctgtcccaaaagagcatccaaaggaggctactaagatggagagtcttgagacccccagcgatgtggctccccaactgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

699

Amino Acids

79.1

Weight (kDa)

9.07

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	136 - 289	4.3e-10	Pentacotripeptide-repeat region of PRORP
PPR_long	PF17177	140 - 248	3.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	158 - 208	1.2e-11	PPR repeat family
PPR_1	PF12854	191 - 223	4.7e-10	PPR repeat
PPR_2	PF13041	194 - 237	1e-09	PPR repeat family
TPR_24	PF23276	196 - 292	8.1e-06	Fungal tetratrico peptide repeats
PPR	PF01535	197 - 227	6.6e-08	PPR repeat
PPR_long	PF17177	214 - 316	8.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	217 - 278	7.9e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	229 - 278	4.6e-14	PPR repeat family
PPR	PF01535	233 - 262	1.5e-06	PPR repeat
PPR_1	PF12854	260 - 292	1.3e-08	PPR repeat
PPR_2	PF13041	266 - 302	5.8e-09	PPR repeat family
PPR_3	PF13812	290 - 346	2.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	296 - 327	5.8e-07	PPR repeat
PPR_2	PF13041	299 - 347	4.2e-15	PPR repeat family
PPR_3	PF13812	323 - 381	1.3e-06	Pentatricopeptide repeat domain
TPR_24	PF23276	355 - 467	1.2e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	356 - 384	5.6e-08	PPR repeat family
PPR_1	PF12854	366 - 398	6.3e-11	PPR repeat
PPR	PF01535	373 - 403	3.2e-08	PPR repeat
PPR_2	PF13041	378 - 417	8.4e-07	PPR repeat family
PPR	PF01535	444 - 473	2.5e-07	PPR repeat
PPR_2	PF13041	444 - 487	3.1e-15	PPR repeat family
PPR_3	PF13812	464 - 520	6.2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	472 - 504	9.2e-10	PPR repeat
PPR_2	PF13041	477 - 524	1.3e-11	PPR repeat family
PPR	PF01535	478 - 508	1.5e-08	PPR repeat
PPR_3	PF13812	498 - 556	4.1e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	512 - 558	5.4e-10	PPR repeat family
PPR_1	PF12854	543 - 574	1.8e-07	PPR repeat
PPR_2	PF13041	545 - 591	9.2e-12	PPR repeat family
PPR	PF01535	548 - 578	4.7e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16010
fragaria_vesca	FvH4_6g31160
malus_domestica	MD17G1195500.v1.1
prunus_persica	Prupe.3G071400_v2.0.a1
pyrus_communis	pycom17g20110
rosa_chinensis	RchiOBHm_Chr2g0137841
rosa_laevigata	RLG00000019680
rosa_multiflora	Rmu_co8002616.1_g000001 Rmu_sc0002170.1_g000007 Rmu_sc0007548.1_g000006
rosa_roxburghii	Rroxscaffold_2G00106770
rosa_rugosa	Rorug02G0346600 Rorug02G0346700 Rorug02G0346800 Rorug02G0346900 Rorug02G0347000
rosa_samantha	Rh2AG393400 Rh2BG400900 Rh2CG380100 Rh2DG415900
rosa_wichuraiana	Rw2G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	395, 1017, 1440, 1650
AarI	CACCTGC	1 cut(s)	1565
AatII	GACGTC	1 cut(s)	204
Acc36I	ACCTGC	1 cut(s)	1565
AccB1I	GGYRCC	1 cut(s)	1892
AccB7I	CCANNNNNTGG	1 cut(s)	1936
AccII	CGCG	2 cut(s)	185, 363
AccIII	TCCGGA	1 cut(s)	1423
AciI	CCGC	3 cut(s)	185, 788, 1264
AclWI	GGATC	6 cut(s)	174, 283, 365, 1395, 1822, 1869
AcsI	RAATTY	2 cut(s)	108, 253
AcuI	CTGAAG	2 cut(s)	173, 899
AcyI	GRCGYC	2 cut(s)	201, 1369
AfaI	GTAC	1 cut(s)	866
AfiI	CCNNNNNNNGG	3 cut(s)	298, 1588, 1936
AflII	CTTAAG	1 cut(s)	1807
AflIII	ACRYGT	1 cut(s)	361
AjiI	CACGTC	1 cut(s)	1316
AjnI	CCWGG	4 cut(s)	52, 537, 1896, 1929
AloI	GAACNNNNNNTCC	2 cut(s)	74, 106
Alw21I	GWGCWC	5 cut(s)	361, 546, 604, 909, 1115
Alw26I	GTCTC	2 cut(s)	1673, 2062
Alw44I	GTGCAC	2 cut(s)	357, 600
AlwI	GGATC	6 cut(s)	174, 283, 365, 1395, 1822, 1869
Aor13HI	TCCGGA	1 cut(s)	1423
AoxI	GGCC	4 cut(s)	122, 207, 457, 1579
ApaLI	GTGCAC	2 cut(s)	357, 600
ApeKI	GCWGC	5 cut(s)	1067, 1223, 1233, 1274, 1697
ApoI	RAATTY	2 cut(s)	108, 253
AseI	ATTAAT	1 cut(s)	963
Asp700I	GAANNNNTTC	1 cut(s)	110
AspS9I	GGNCC	4 cut(s)	61, 122, 535, 1580
AsuC2I	CCSGG	1 cut(s)	581
AsuHPI	GGTGA	3 cut(s)	332, 1021, 1741
AsuII	TTCGAA	1 cut(s)	352
AvaII	GGWCC	2 cut(s)	61, 535
BaeGI	GKGCMC	3 cut(s)	361, 604, 1897
BanI	GGYRCC	1 cut(s)	1892
BanII	GRGCYC	2 cut(s)	546, 1115
BauI	CACGAG	1 cut(s)	1397
BbsI	GAAGAC	1 cut(s)	433
Bbv12I	GWGCWC	5 cut(s)	361, 546, 604, 909, 1115
BbvI	GCAGC	5 cut(s)	1079, 1210, 1245, 1261, 1684
BccI	CCATC	8 cut(s)	340, 412, 973, 1133, 1186, 1453, 1852, 2049
BceAI	ACGGC	1 cut(s)	1322
BciT130I	CCWGG	4 cut(s)	54, 539, 1898, 1931
BclI	TGATCA	1 cut(s)	1239
BcnI	CCSGG	1 cut(s)	581
BcoDI	GTCTC	2 cut(s)	1673, 2062
BfaI	CTAG	5 cut(s)	758, 827, 1326, 1569, 1844
BfrI	CTTAAG	1 cut(s)	1807
BfuAI	ACCTGC	1 cut(s)	1565
BisI	GCNGC	5 cut(s)	1068, 1224, 1234, 1275, 1698
BlsI	GCNGC	5 cut(s)	1069, 1225, 1235, 1276, 1699
Bme1390I	CCNGG	5 cut(s)	54, 539, 581, 1898, 1931
Bme18I	GGWCC	2 cut(s)	61, 535
BmgBI	CACGTC	1 cut(s)	1316
BmgT120I	GGNCC	4 cut(s)	61, 122, 535, 1580
BmiI	GGNNCC	6 cut(s)	63, 123, 1208, 1894, 2018, 2087
BmrFI	CCNGG	5 cut(s)	54, 539, 581, 1898, 1931
BmsI	GCATC	7 cut(s)	29, 118, 501, 841, 1406, 1627, 2043
BpiI	GAAGAC	1 cut(s)	433
BpmI	CTGGAG	1 cut(s)	1038
Bpu14I	TTCGAA	1 cut(s)	352
BpuEI	CTTGAG	3 cut(s)	176, 1787, 2086
BpuMI	CCSGG	1 cut(s)	581
Bsa29I	ATCGAT	1 cut(s)	369
BsaHI	GRCGYC	2 cut(s)	201, 1369
BsaI	GGTCTC	1 cut(s)	2062
BsaJI	CCNNGG	5 cut(s)	53, 141, 1506, 1896, 1930
BsaWI	WCCGGW	2 cut(s)	6, 1423
Bsc4I	CCNNNNNNNGG	3 cut(s)	298, 1588, 1936
Bse3DI	GCAATG	1 cut(s)	1954
BseAI	TCCGGA	1 cut(s)	1423
BseBI	CCWGG	4 cut(s)	54, 539, 1898, 1931
BseCI	ATCGAT	1 cut(s)	369
BseDI	CCNNGG	5 cut(s)	53, 141, 1506, 1896, 1930
BseGI	GGATG	7 cut(s)	88, 682, 1201, 1421, 1432, 1464, 2034
BseLI	CCNNNNNNNGG	3 cut(s)	298, 1588, 1936
BseMI	GCAATG	1 cut(s)	1954
BseMII	CTCAG	5 cut(s)	149, 378, 1684, 1809, 1838
BseRI	GAGGAG	1 cut(s)	2017
BseSI	GKGCMC	3 cut(s)	361, 604, 1897
BseXI	GCAGC	5 cut(s)	1079, 1210, 1245, 1261, 1684
BseYI	CCCAGC	3 cut(s)	239, 836, 2074
BsgI	GTGCAG	1 cut(s)	451
Bsh1236I	CGCG	2 cut(s)	185, 363
BshFI	GGCC	4 cut(s)	124, 209, 459, 1581
BshNI	GGYRCC	1 cut(s)	1892
BshVI	ATCGAT	1 cut(s)	369
BsiHKAI	GWGCWC	5 cut(s)	361, 546, 604, 909, 1115
BsiSI	CCGG	3 cut(s)	7, 581, 1424
BslFI	GGGAC	1 cut(s)	2008
BslI	CCNNNNNNNGG	3 cut(s)	298, 1588, 1936
BsmAI	GTCTC	2 cut(s)	1673, 2062
BsmFI	GGGAC	1 cut(s)	2008
BsmI	GAATGC	1 cut(s)	1618
BsnI	GGCC	4 cut(s)	124, 209, 459, 1581
Bso31I	GGTCTC	1 cut(s)	2062
Bsp119I	TTCGAA	1 cut(s)	352
Bsp1286I	GDGCHC	6 cut(s)	361, 546, 604, 909, 1115, 1897
Bsp13I	TCCGGA	1 cut(s)	1423
Bsp1407I	TGTACA	1 cut(s)	864
Bsp143I	GATC	9 cut(s)	166, 288, 370, 498, 1239, 1387, 1741, 1814, 1861
Bsp19I	CCATGG	1 cut(s)	1506
BspACI	CCGC	3 cut(s)	185, 788, 1264
BspANI	GGCC	4 cut(s)	124, 209, 459, 1581
BspCNI	CTCAG	5 cut(s)	150, 379, 1683, 1810, 1837
BspDI	ATCGAT	1 cut(s)	369
BspEI	TCCGGA	1 cut(s)	1423
BspFNI	CGCG	2 cut(s)	185, 363
BspHI	TCATGA	2 cut(s)	526, 909
BspLI	GGNNCC	6 cut(s)	63, 123, 1208, 1894, 2018, 2087
BspMI	ACCTGC	1 cut(s)	1565
BspPI	GGATC	6 cut(s)	174, 283, 365, 1395, 1822, 1869
BspT104I	TTCGAA	1 cut(s)	352
BspT107I	GGYRCC	1 cut(s)	1892
BspTI	CTTAAG	1 cut(s)	1807
BspTNI	GGTCTC	1 cut(s)	2062
BsrDI	GCAATG	1 cut(s)	1954
BsrGI	TGTACA	1 cut(s)	864
BssECI	CCNNGG	5 cut(s)	53, 141, 1506, 1896, 1930
BssMI	GATC	9 cut(s)	166, 288, 370, 498, 1239, 1387, 1741, 1814, 1861
BssNI	GRCGYC	2 cut(s)	201, 1369
BssSI	CACGAG	1 cut(s)	1397
BssT1I	CCWWGG	2 cut(s)	141, 1506
Bst2BI	CACGAG	1 cut(s)	1397
Bst2UI	CCWGG	4 cut(s)	54, 539, 1898, 1931
Bst4CI	ACNGT	8 cut(s)	575, 589, 599, 677, 796, 1247, 1310, 1835
Bst6I	CTCTTC	4 cut(s)	239, 1182, 1686, 1994
BstACI	GRCGYC	2 cut(s)	201, 1369
BstAFI	CTTAAG	1 cut(s)	1807
BstAUI	TGTACA	1 cut(s)	864
BstBI	TTCGAA	1 cut(s)	352
BstC8I	GCNNGC	4 cut(s)	361, 470, 1681, 1685
BstDEI	CTNAG	8 cut(s)	158, 387, 414, 1670, 1818, 1824, 1960, 2051
BstDSI	CCRYGG	1 cut(s)	1506
BstF5I	GGATG	7 cut(s)	88, 682, 1201, 1421, 1432, 1464, 2034
BstFNI	CGCG	2 cut(s)	185, 363
BstKTI	GATC	9 cut(s)	169, 291, 373, 501, 1242, 1390, 1744, 1817, 1864
BstMAI	GTCTC	2 cut(s)	1673, 2062
BstMBI	GATC	9 cut(s)	166, 288, 370, 498, 1239, 1387, 1741, 1814, 1861
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 465, 1064
BstNI	CCWGG	4 cut(s)	54, 539, 1898, 1931
BstNSI	RCATGY	1 cut(s)	877
BstSCI	CCNGG	5 cut(s)	52, 537, 579, 1896, 1929
BstSLI	GKGCMC	3 cut(s)	361, 604, 1897
BstUI	CGCG	2 cut(s)	185, 363
BstV1I	GCAGC	5 cut(s)	1079, 1210, 1245, 1261, 1684
BstV2I	GAAGAC	1 cut(s)	433
BstX2I	RGATCY	2 cut(s)	1387, 1814
BstXI	CCANNNNNNTGG	2 cut(s)	280, 2082
BstYI	RGATCY	2 cut(s)	1387, 1814
Bsu15I	ATCGAT	1 cut(s)	369
BsuRI	GGCC	4 cut(s)	124, 209, 459, 1581
BsuTUI	ATCGAT	1 cut(s)	369
BtgI	CCRYGG	1 cut(s)	1506
BtgZI	GCGATG	1 cut(s)	2093
BtrI	CACGTC	1 cut(s)	1316
BtsCI	GGATG	7 cut(s)	88, 682, 1201, 1421, 1432, 1464, 2034
BtsI	GCAGTG	1 cut(s)	1850
BtsIMutI	CAGTG	3 cut(s)	604, 807, 1850
BveI	ACCTGC	1 cut(s)	1565
Cac8I	GCNNGC	4 cut(s)	361, 470, 1681, 1685
CciI	TCATGA	2 cut(s)	526, 909
Cfr13I	GGNCC	4 cut(s)	61, 122, 535, 1580
ClaI	ATCGAT	1 cut(s)	369
CseI	GACGC	2 cut(s)	1358, 1913
Csp6I	GTAC	1 cut(s)	865
CviAII	CATG	9 cut(s)	37, 496, 527, 862, 874, 910, 1074, 1450, 1507
CviQI	GTAC	1 cut(s)	865
DdeI	CTNAG	8 cut(s)	158, 387, 414, 1670, 1818, 1824, 1960, 2051
DpnI	GATC	9 cut(s)	168, 290, 372, 500, 1241, 1389, 1743, 1816, 1863
DpnII	GATC	9 cut(s)	166, 288, 370, 498, 1239, 1387, 1741, 1814, 1861
DraI	TTTAAA	1 cut(s)	1557
Eam1104I	CTCTTC	4 cut(s)	239, 1182, 1686, 1994
EarI	CTCTTC	4 cut(s)	239, 1182, 1686, 1994
EciI	GGCGGA	1 cut(s)	777
Ecl136II	GAGCTC	2 cut(s)	544, 1113
Eco130I	CCWWGG	2 cut(s)	141, 1506
Eco24I	GRGCYC	2 cut(s)	546, 1115
Eco31I	GGTCTC	1 cut(s)	2062
Eco47I	GGWCC	2 cut(s)	61, 535
Eco53kI	GAGCTC	2 cut(s)	544, 1113
Eco57I	CTGAAG	2 cut(s)	173, 899
EcoICRI	GAGCTC	2 cut(s)	544, 1113
EcoO109I	RGGNCCY	2 cut(s)	61, 122
EcoRII	CCWGG	4 cut(s)	52, 537, 1896, 1929
EcoT14I	CCWWGG	2 cut(s)	141, 1506
EcoT22I	ATGCAT	1 cut(s)	22
EcoT38I	GRGCYC	2 cut(s)	546, 1115
ErhI	CCWWGG	2 cut(s)	141, 1506
FaeI	CATG	9 cut(s)	40, 499, 530, 865, 877, 913, 1077, 1453, 1510
FaqI	GGGAC	1 cut(s)	2008
FatI	CATG	9 cut(s)	36, 495, 526, 861, 873, 909, 1073, 1449, 1506
FauNDI	CATATG	1 cut(s)	1797
FbaI	TGATCA	1 cut(s)	1239
Fnu4HI	GCNGC	5 cut(s)	1068, 1224, 1234, 1275, 1698
FokI	GGATG	7 cut(s)	95, 669, 1208, 1428, 1439, 1471, 2021
FriOI	GRGCYC	2 cut(s)	546, 1115
Fsp4HI	GCNGC	5 cut(s)	1068, 1224, 1234, 1275, 1698
FspBI	CTAG	5 cut(s)	758, 827, 1326, 1569, 1844
GluI	GCNGC	5 cut(s)	1068, 1224, 1234, 1275, 1698
GsaI	CCCAGC	3 cut(s)	243, 840, 2078
GsuI	CTGGAG	1 cut(s)	1038
HaeIII	GGCC	4 cut(s)	124, 209, 459, 1581
HapII	CCGG	3 cut(s)	7, 581, 1424
HgaI	GACGC	2 cut(s)	1358, 1913
Hin1I	GRCGYC	2 cut(s)	201, 1369
Hin1II	CATG	9 cut(s)	40, 499, 530, 865, 877, 913, 1077, 1453, 1510
HindIII	AAGCTT	3 cut(s)	747, 1032, 1170
HinfI	GANTC	6 cut(s)	399, 638, 1043, 1129, 1627, 2061
HpaII	CCGG	3 cut(s)	7, 581, 1424
HphI	GGTGA	3 cut(s)	332, 1021, 1741
Hpy166II	GTNNAC	6 cut(s)	93, 359, 424, 602, 680, 1313
Hpy188I	TCNGA	7 cut(s)	25, 388, 1110, 1134, 1358, 1819, 1998
Hpy8I	GTNNAC	6 cut(s)	93, 359, 424, 602, 680, 1313
Hpy99I	CGWCG	2 cut(s)	206, 1929
HpyAV	CCTTC	9 cut(s)	52, 75, 243, 402, 512, 661, 874, 935, 1980
HpyCH4III	ACNGT	8 cut(s)	575, 589, 599, 677, 796, 1247, 1310, 1835
HpyCH4IV	ACGT	2 cut(s)	201, 1315
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 465, 1064
HpyF3I	CTNAG	8 cut(s)	158, 387, 414, 1670, 1818, 1824, 1960, 2051
HpySE526I	ACGT	2 cut(s)	201, 1315
Hsp92I	GRCGYC	2 cut(s)	201, 1369
Hsp92II	CATG	9 cut(s)	40, 499, 530, 865, 877, 913, 1077, 1453, 1510
Kpn2I	TCCGGA	1 cut(s)	1423
Ksp22I	TGATCA	1 cut(s)	1239
Kzo9I	GATC	9 cut(s)	166, 288, 370, 498, 1239, 1387, 1741, 1814, 1861
LmnI	GCTCC	3 cut(s)	541, 1057, 2091
Lsp1109I	GCAGC	5 cut(s)	1079, 1210, 1245, 1261, 1684
LweI	GCATC	7 cut(s)	29, 118, 501, 841, 1406, 1627, 2043
MaeI	CTAG	5 cut(s)	758, 827, 1326, 1569, 1844
MaeII	ACGT	2 cut(s)	201, 1315
MaeIII	GTNAC	4 cut(s)	485, 569, 589, 1009
MalI	GATC	9 cut(s)	168, 290, 372, 500, 1241, 1389, 1743, 1816, 1863
MboI	GATC	9 cut(s)	166, 288, 370, 498, 1239, 1387, 1741, 1814, 1861
MboII	GAAGA	9 cut(s)	256, 433, 860, 1096, 1199, 1417, 1523, 1703, 2011
MflI	RGATCY	2 cut(s)	1387, 1814
MhlI	GDGCHC	6 cut(s)	361, 546, 604, 909, 1115, 1897
MluI	ACGCGT	1 cut(s)	361
MlyI	GAGTC	1 cut(s)	2070
MmeI	TCCRAC	3 cut(s)	283, 710, 1862
Mph1103I	ATGCAT	1 cut(s)	22
MroI	TCCGGA	1 cut(s)	1423
MroXI	GAANNNNTTC	1 cut(s)	110
MslI	CAYNNNNRTG	1 cut(s)	278
MspA1I	CMGCKG	2 cut(s)	377, 1223
MspCI	CTTAAG	1 cut(s)	1807
MspI	CCGG	3 cut(s)	7, 581, 1424
MspR9I	CCNGG	5 cut(s)	54, 539, 581, 1898, 1931
Mva1269I	GAATGC	1 cut(s)	1618
MvaI	CCWGG	4 cut(s)	54, 539, 1898, 1931
MvnI	CGCG	2 cut(s)	185, 363
MwoI	GCNNNNNNNGC	3 cut(s)	137, 465, 1064
NciI	CCSGG	1 cut(s)	581
NcoI	CCATGG	1 cut(s)	1506
NdeI	CATATG	1 cut(s)	1797
NdeII	GATC	9 cut(s)	166, 288, 370, 498, 1239, 1387, 1741, 1814, 1861
NlaIII	CATG	9 cut(s)	40, 499, 530, 865, 877, 913, 1077, 1453, 1510
NlaIV	GGNNCC	6 cut(s)	63, 123, 1208, 1894, 2018, 2087
NmuCI	GTSAC	2 cut(s)	589, 1009
NsiI	ATGCAT	1 cut(s)	22
NspI	RCATGY	1 cut(s)	877
NspV	TTCGAA	1 cut(s)	352
PagI	TCATGA	2 cut(s)	526, 909
PaqCI	CACCTGC	1 cut(s)	1565
PctI	GAATGC	1 cut(s)	1618
PdmI	GAANNNNTTC	1 cut(s)	110
PfeI	GAWTC	5 cut(s)	399, 638, 1043, 1129, 1627
PflFI	GACNNNGTC	1 cut(s)	587
PflMI	CCANNNNNTGG	1 cut(s)	1936
PfoI	TCCNGGA	2 cut(s)	537, 579
PkrI	GCNGC	5 cut(s)	1069, 1225, 1235, 1276, 1699
PleI	GAGTC	1 cut(s)	2069
PpsI	GAGTC	1 cut(s)	2069
PpuMI	RGGWCCY	1 cut(s)	61
PshBI	ATTAAT	1 cut(s)	963
PsiI	TTATAA	4 cut(s)	395, 1017, 1440, 1650
Psp124BI	GAGCTC	2 cut(s)	546, 1115
Psp5II	RGGWCCY	1 cut(s)	61
Psp6I	CCWGG	4 cut(s)	52, 537, 1896, 1929
PspFI	CCCAGC	3 cut(s)	239, 836, 2074
PspGI	CCWGG	4 cut(s)	52, 537, 1896, 1929
PspN4I	GGNNCC	6 cut(s)	63, 123, 1208, 1894, 2018, 2087
PspPI	GGNCC	4 cut(s)	61, 122, 535, 1580
PspPPI	RGGWCCY	1 cut(s)	61
PsuI	RGATCY	2 cut(s)	1387, 1814
PsyI	GACNNNGTC	1 cut(s)	587
PvuII	CAGCTG	2 cut(s)	377, 1223
RsaI	GTAC	1 cut(s)	866
RsaNI	GTAC	1 cut(s)	865
RseI	CAYNNNNRTG	1 cut(s)	278
SacI	GAGCTC	2 cut(s)	546, 1115
SatI	GCNGC	5 cut(s)	1068, 1224, 1234, 1275, 1698
Sau3AI	GATC	9 cut(s)	166, 288, 370, 498, 1239, 1387, 1741, 1814, 1861
Sau96I	GGNCC	4 cut(s)	61, 122, 535, 1580
SchI	GAGTC	1 cut(s)	2070
ScrFI	CCNGG	5 cut(s)	54, 539, 581, 1898, 1931
SduI	GDGCHC	6 cut(s)	361, 546, 604, 909, 1115, 1897
SfaNI	GCATC	7 cut(s)	29, 118, 501, 841, 1406, 1627, 2043
SfuI	TTCGAA	1 cut(s)	352
SinI	GGWCC	2 cut(s)	61, 535
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	4 cut(s)	191, 1766, 1807, 2065
SmoI	CTYRAG	4 cut(s)	191, 1766, 1807, 2065
SsiI	CCGC	3 cut(s)	185, 788, 1264
SspMI	CTAG	5 cut(s)	758, 827, 1326, 1569, 1844
SstI	GAGCTC	2 cut(s)	546, 1115
StyD4I	CCNGG	5 cut(s)	52, 537, 579, 1896, 1929
StyI	CCWWGG	2 cut(s)	141, 1506
TaaI	ACNGT	8 cut(s)	575, 589, 599, 677, 796, 1247, 1310, 1835
TaiI	ACGT	2 cut(s)	204, 1318
TaqI	TCGA	6 cut(s)	204, 352, 369, 1127, 1675, 1965
TatI	WGTACW	1 cut(s)	864
TfiI	GAWTC	5 cut(s)	399, 638, 1043, 1129, 1627
TscAI	CASTG	3 cut(s)	604, 814, 1857
TseFI	GTSAC	2 cut(s)	589, 1009
TseI	GCWGC	5 cut(s)	1067, 1223, 1233, 1274, 1697
Tsp45I	GTSAC	2 cut(s)	589, 1009
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	3 cut(s)	604, 814, 1857
Tth111I	GACNNNGTC	1 cut(s)	587
Van91I	CCANNNNNTGG	1 cut(s)	1936
Vha464I	CTTAAG	1 cut(s)	1807
VneI	GTGCAC	2 cut(s)	357, 600
VpaK11BI	GGWCC	2 cut(s)	61, 535
VspI	ATTAAT	1 cut(s)	963
XapI	RAATTY	2 cut(s)	108, 253
XbaI	TCTAGA	1 cut(s)	1843
XceI	RCATGY	1 cut(s)	877
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	5 cut(s)	758, 827, 1326, 1569, 1844
ZraI	GACGTC	1 cut(s)	202
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.